Rmu_sc0007847.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007847.1
OG0000308
Physical Location & Seq
Forward (+)
10695 .. 11942
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007847.1_g000003.1.cds

Sequence Viewer

Length: 906 bp
atggcaattgatacaatggcagcccgcttggcctcctccctagcgttggctgatggcaagaaaccggtggacctgcgtccatccaaacaattgagacaacctgaagctttcatggtgggaaagctgctcacggcgcaggaatactctcatccttctgatgtggatagggtttggaaaggtggaccgtggggctacaacagggctactgtagcactagcgtcgtacgacggtatcagtctgatgagcgagataccactgcagaaatcatcctactggatgacgctgcaaggggtaccgccggcgttcaggtctgagagtattatgcgcctgatcggtagtacactgggagatttcaaggagtttgatcggccggatctggaagaagatagtgctacaccagttggagcggtggtgcagcccacagccttggcaatactacggggacaggaaaaccctaataacaatagggtggtggtaaacaatcaaaccttgatcttcaaggcacagataccaaataacataccggaagctttacttccccaatccgtggtagccatgcgtcgtcaaagacaggtgcaaattagagaaccgagagagccaagactcaatggagatccaattacaggacaaagtcttgctattgggaagaaaaatttggatgcagtgactatgggtttattggagggacattccaacaatagtgatcaaccaaagagaaaaagaggacgccctgttggaagtgtgaataagccgccttatggagcaagaaatggaaaaaagaaagacggtgaacctgaaaagacaaagagcaaaaagaccaacctgatgccgaggttgttagctgttgaggagcctgaaactagtactagctctaaacctaaggggaaagatatggtacttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

301

Amino Acids

33.02

Weight (kDa)

9.8

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 407
AciI CCGC 4 cut(s) 25, 296, 407, 752
AclWI GGATC 2 cut(s) 381, 608
AcoI YGGCCR 1 cut(s) 368
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 5 cut(s) 224, 294, 340, 865, 897
AfiI CCNNNNNNNGG 4 cut(s) 46, 547, 623, 758
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 2 cut(s) 355, 499
AhlI ACTAGT 1 cut(s) 860
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AluBI AGCT 5 cut(s) 107, 124, 530, 842, 870
AluI AGCT 5 cut(s) 107, 124, 530, 842, 870
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 2 cut(s) 381, 608
AoxI GGCC 2 cut(s) 30, 368
ApeKI GCWGC 4 cut(s) 20, 124, 283, 415
ApoI RAATTY 1 cut(s) 652
AsiGI ACCGGT 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 292
AspLEI GCGC 2 cut(s) 136, 327
AspS9I GGNCC 2 cut(s) 70, 182
AsuHPI GGTGA 1 cut(s) 800
AvaII GGWCC 2 cut(s) 70, 182
AxyI CCTNAGG 1 cut(s) 879
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BanI GGYRCC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 32, 111, 270, 427
BccI CCATC 2 cut(s) 47, 88
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 860
BfaI CTAG 4 cut(s) 41, 215, 861, 867
BfmI CTRYAG 2 cut(s) 207, 257
BfuAI ACCTGC 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 5 cut(s) 21, 125, 284, 416, 752
BlsI GCNGC 5 cut(s) 22, 126, 285, 417, 753
BmcAI AGTACT 1 cut(s) 865
Bme18I GGWCC 2 cut(s) 70, 182
BmgT120I GGNCC 2 cut(s) 70, 182
BmiI GGNNCC 2 cut(s) 294, 852
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 649, 816
BmuI ACTGGG 1 cut(s) 353
BoxI GACNNNNGTC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 4 cut(s) 185, 426, 546, 830
BsaWI WCCGGW 2 cut(s) 64, 523
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 547, 623, 758
Bse118I RCCGGY 2 cut(s) 64, 298
Bse1I ACTGG 3 cut(s) 278, 348, 398
Bse21I CCTNAGG 1 cut(s) 879
BseDI CCNNGG 4 cut(s) 185, 426, 546, 830
BseGI GGATG 5 cut(s) 80, 148, 266, 282, 664
BseLI CCNNNNNNNGG 4 cut(s) 46, 547, 623, 758
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 3 cut(s) 278, 348, 398
BseRI GAGGAG 2 cut(s) 25, 863
BseX3I CGGCCG 1 cut(s) 368
BseXI GCAGC 4 cut(s) 32, 111, 270, 427
BsgI GTGCAG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 2 cut(s) 32, 370
BshNI GGYRCC 1 cut(s) 292
BshTI ACCGGT 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 371
BsiSI CCGG 4 cut(s) 65, 299, 371, 524
BsiWI CGTACG 1 cut(s) 222
BslFI GGGAC 2 cut(s) 456, 699
BslI CCNNNNNNNGG 4 cut(s) 46, 547, 623, 758
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 456, 699
BsnI GGCC 2 cut(s) 32, 370
Bsp143I GATC 6 cut(s) 330, 364, 373, 492, 613, 703
BspACI CCGC 4 cut(s) 25, 296, 407, 752
BspANI GGCC 2 cut(s) 32, 370
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 294, 852
BspMAI CTGCAG 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 2 cut(s) 381, 608
BspT107I GGYRCC 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 407
BsrFI RCCGGY 2 cut(s) 64, 298
BsrI ACTGG 3 cut(s) 278, 348, 398
BssAI RCCGGY 2 cut(s) 64, 298
BssECI CCNNGG 4 cut(s) 185, 426, 546, 830
BssMI GATC 6 cut(s) 330, 364, 373, 492, 613, 703
BssNI GRCGYC 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 4 cut(s) 186, 208, 230, 788
BstACI GRCGYC 1 cut(s) 727
BstC8I GCNNGC 2 cut(s) 25, 300
BstDEI CTNAG 2 cut(s) 312, 879
BstDSI CCRYGG 2 cut(s) 185, 546
BstF5I GGATG 5 cut(s) 80, 148, 266, 282, 664
BstHHI GCGC 2 cut(s) 136, 327
BstKTI GATC 6 cut(s) 333, 367, 376, 495, 616, 706
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 6 cut(s) 330, 364, 373, 492, 613, 703
BstMCI CGRYCG 1 cut(s) 371
BstMWI GCNNNNNNNGC 3 cut(s) 29, 133, 209
BstPAI GACNNNNGTC 1 cut(s) 75
BstSFI CTRYAG 2 cut(s) 207, 257
BstV1I GCAGC 4 cut(s) 32, 111, 270, 427
BstX2I RGATCY 2 cut(s) 373, 613
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 2 cut(s) 373, 613
BstZI CGGCCG 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 879
BsuRI GGCC 2 cut(s) 32, 370
BtgI CCRYGG 2 cut(s) 185, 546
BtsCI GGATG 5 cut(s) 80, 148, 266, 282, 664
BtsI GCAGTG 2 cut(s) 254, 669
BtsIMutI CAGTG 3 cut(s) 254, 341, 669
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 25, 300
CfoI GCGC 2 cut(s) 136, 327
Cfr10I RCCGGY 2 cut(s) 64, 298
Cfr13I GGNCC 2 cut(s) 70, 182
CseI GACGC 5 cut(s) 65, 207, 289, 548, 735
Csp6I GTAC 5 cut(s) 223, 293, 339, 864, 896
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 2 cut(s) 112, 556
CviQI GTAC 5 cut(s) 223, 293, 339, 864, 896
DdeI CTNAG 2 cut(s) 312, 879
DpnI GATC 6 cut(s) 332, 366, 375, 494, 615, 705
DpnII GATC 6 cut(s) 330, 364, 373, 492, 613, 703
EaeI YGGCCR 1 cut(s) 368
EagI CGGCCG 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 70, 182
Eco52I CGGCCG 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 879
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 115, 559
FaiI YATR 7 cut(s) 113, 323, 521, 557, 671, 759, 893
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 2 cut(s) 456, 699
FatI CATG 2 cut(s) 111, 555
FauI CCCGC 1 cut(s) 32
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 5 cut(s) 21, 125, 284, 416, 752
FokI GGATG 5 cut(s) 67, 135, 253, 289, 671
Fsp4HI GCNGC 5 cut(s) 21, 125, 284, 416, 752
FspBI CTAG 4 cut(s) 41, 215, 861, 867
GlaI GCGC 2 cut(s) 135, 326
GluI GCNGC 5 cut(s) 21, 125, 284, 416, 752
HaeIII GGCC 2 cut(s) 32, 370
HapII CCGG 4 cut(s) 65, 299, 371, 524
HgaI GACGC 5 cut(s) 65, 207, 289, 548, 735
HhaI GCGC 2 cut(s) 136, 327
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 2 cut(s) 115, 559
Hin6I GCGC 2 cut(s) 134, 325
HinP1I GCGC 2 cut(s) 134, 325
HindIII AAGCTT 2 cut(s) 105, 528
HinfI GANTC 1 cut(s) 603
HpaII CCGG 4 cut(s) 65, 299, 371, 524
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 5 cut(s) 70, 182, 341, 478, 791
Hpy188I TCNGA 3 cut(s) 157, 240, 313
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 5 cut(s) 70, 182, 341, 478, 791
Hpy99I CGWCG 3 cut(s) 223, 230, 564
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 4 cut(s) 186, 208, 230, 788
HpyCH4V TGCA 5 cut(s) 259, 286, 415, 577, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 133, 209
HpyF3I CTNAG 2 cut(s) 312, 879
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 2 cut(s) 115, 559
HspAI GCGC 2 cut(s) 134, 325
KpnI GGTACC 1 cut(s) 296
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 6 cut(s) 330, 364, 373, 492, 613, 703
LmnI GCTCC 3 cut(s) 404, 761, 850
Lsp1109I GCAGC 4 cut(s) 32, 111, 270, 427
LweI GCATC 2 cut(s) 649, 816
MaeI CTAG 4 cut(s) 41, 215, 861, 867
MaeIII GTNAC 1 cut(s) 664
MalI GATC 6 cut(s) 332, 366, 375, 494, 615, 705
MbiI CCGCTC 1 cut(s) 407
MboI GATC 6 cut(s) 330, 364, 373, 492, 613, 703
MboII GAAGA 4 cut(s) 392, 395, 487, 658
MfeI CAATTG 2 cut(s) 6, 89
MflI RGATCY 2 cut(s) 373, 613
MluCI AATT 5 cut(s) 6, 89, 579, 618, 652
MlyI GAGTC 1 cut(s) 597
MmeI TCCRAC 3 cut(s) 382, 715, 717
MnlI CCTC 6 cut(s) 43, 46, 676, 716, 825, 841
MreI CGCCGGCG 1 cut(s) 298
MroNI GCCGGC 1 cut(s) 298
MseI TTAA 1 cut(s) 904
MspI CCGG 4 cut(s) 65, 299, 371, 524
MunI CAATTG 2 cut(s) 6, 89
MwoI GCNNNNNNNGC 3 cut(s) 29, 133, 209
NaeI GCCGGC 1 cut(s) 300
NdeII GATC 6 cut(s) 330, 364, 373, 492, 613, 703
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 2 cut(s) 115, 559
NlaIV GGNNCC 2 cut(s) 294, 852
NmeAIII GCCGAG 1 cut(s) 855
NmuCI GTSAC 1 cut(s) 664
PdiI GCCGGC 1 cut(s) 300
Pfl23II CGTACG 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 630
PflMI CCANNNNNTGG 1 cut(s) 547
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 5 cut(s) 22, 126, 285, 417, 753
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
PshAI GACNNNNGTC 1 cut(s) 75
PspLI CGTACG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 294, 852
PspPI GGNCC 2 cut(s) 70, 182
PstI CTGCAG 1 cut(s) 261
PsuI RGATCY 2 cut(s) 373, 613
PsyI GACNNNGTC 1 cut(s) 630
RsaI GTAC 5 cut(s) 224, 294, 340, 865, 897
RsaNI GTAC 5 cut(s) 223, 293, 339, 864, 896
SaqAI TTAA 1 cut(s) 904
SatI GCNGC 5 cut(s) 21, 125, 284, 416, 752
Sau3AI GATC 6 cut(s) 330, 364, 373, 492, 613, 703
Sau96I GGNCC 2 cut(s) 70, 182
ScaI AGTACT 1 cut(s) 865
SchI GAGTC 1 cut(s) 597
SfaNI GCATC 2 cut(s) 649, 816
SfcI CTRYAG 2 cut(s) 207, 257
SgrAI CRCCGGYG 1 cut(s) 298
SinI GGWCC 2 cut(s) 70, 182
SpeI ACTAGT 1 cut(s) 860
Sse9I AATT 5 cut(s) 6, 89, 579, 618, 652
SsiI CCGC 4 cut(s) 25, 296, 407, 752
SspMI CTAG 4 cut(s) 41, 215, 861, 867
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 4 cut(s) 186, 208, 230, 788
TasI AATT 5 cut(s) 6, 89, 579, 618, 652
TatI WGTACW 2 cut(s) 338, 863
TauI GCSGC 1 cut(s) 754
Tru1I TTAA 1 cut(s) 904
Tru9I TTAA 1 cut(s) 904
TscAI CASTG 3 cut(s) 261, 348, 669
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 4 cut(s) 20, 124, 283, 415
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 3 cut(s) 261, 348, 669
Tth111I GACNNNGTC 1 cut(s) 630
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 2 cut(s) 70, 182
XapI RAATTY 1 cut(s) 652
XspI CTAG 4 cut(s) 41, 215, 861, 867
ZrmI AGTACT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.