Rroxscaffold_1G00006150

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000308
Physical Location & Seq
Forward (+)
8167602 .. 8171801
4200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006150.1

Sequence Viewer

Length: 375 bp
ATGGCAACGATTGACGCAATGGTAACTCGCCTGGCCTCCTCCCTAGCCCTCAGCCACCGTGGATCTACGCCCGTCCAAGGGTTTGAGACAACCCGAGGCTTTCATGATTGGCAAATTATCGACAACGAGGGAATACTCGTGCAAATCTTTCCCGGGAATGTTCCGGCTGCATGGAGGATTAATGGTAATCTCGGGGTGGAGGAAGTAGGAGAAGATGACAAAGTTTTGTTCTCCTTCACGGACCCAAACGATGTTGACCGTGTTTGGAAAGGAGGACCATGGGGCTATAACCGAGCTCCGATATCCCTTGCACGATATGACGGTGTCGACCCCCGGCGGTGGAGGTACCCCTCAAGAAGTCATCCTACCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

124

Amino Acids

13.85

Weight (kDa)

5.85

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 54 - 107 4.8e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 345
AccI GTMKAC 1 cut(s) 327
AciI CCGC 1 cut(s) 337
AclWI GGATC 1 cut(s) 70
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 77, 78, 339
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 3 cut(s) 93, 152, 191
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 167
AseI ATTAAT 1 cut(s) 180
Asp718I GGTACC 1 cut(s) 345
AspS9I GGNCC 2 cut(s) 241, 275
AsuC2I CCSGG 3 cut(s) 153, 154, 334
AvaI CYCGRG 3 cut(s) 93, 152, 191
AvaII GGWCC 2 cut(s) 241, 275
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 298
BarI GAAGNNNNNNTAC 1 cut(s) 349
BauI CACGAG 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 32
BcnI CCSGG 3 cut(s) 153, 154, 334
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 4 cut(s) 32, 153, 154, 334
Bme18I GGWCC 2 cut(s) 241, 275
BmeT110I CYCGRG 3 cut(s) 93, 152, 191
BmgT120I GGNCC 2 cut(s) 241, 275
BmiI GGNNCC 2 cut(s) 243, 347
BmrFI CCNGG 4 cut(s) 32, 153, 154, 334
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 3 cut(s) 153, 154, 334
BsaJI CCNNGG 6 cut(s) 58, 76, 94, 152, 278, 332
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 78, 339
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 6 cut(s) 58, 76, 94, 152, 278, 332
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 77, 78, 339
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 3 cut(s) 93, 152, 191
BsiSI CCGG 4 cut(s) 153, 164, 334, 369
BslI CCNNNNNNNGG 3 cut(s) 77, 78, 339
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 3 cut(s) 93, 152, 191
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 1 cut(s) 62
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 63
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 243, 347
BspPI GGATC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 24
BssECI CCNNGG 6 cut(s) 58, 76, 94, 152, 278, 332
BssMI GATC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 137
BssT1I CCWWGG 2 cut(s) 76, 278
Bst2BI CACGAG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 59, 260, 323
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 2 cut(s) 58, 278
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 4 cut(s) 30, 151, 152, 332
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 2 cut(s) 58, 278
BtsCI GGATG 1 cut(s) 361
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 241, 275
Cfr9I CCCGGG 1 cut(s) 152
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 346
CviAII CATG 3 cut(s) 104, 171, 279
CviJI RGCY 7 cut(s) 35, 47, 54, 99, 167, 285, 296
CviKI_1 RGCY 7 cut(s) 35, 47, 54, 99, 167, 285, 296
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 76, 278
Eco24I GRGCYC 1 cut(s) 298
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 241, 275
Eco53kI GAGCTC 1 cut(s) 296
Eco88I CYCGRG 3 cut(s) 93, 152, 191
EcoICRI GAGCTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 303
EcoT14I CCWWGG 2 cut(s) 76, 278
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 2 cut(s) 76, 278
FaeI CATG 3 cut(s) 107, 174, 282
FaiI YATR 5 cut(s) 105, 172, 280, 288, 318
FatI CATG 3 cut(s) 103, 170, 278
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 348
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 35
HapII CCGG 4 cut(s) 153, 164, 334, 369
HgaI GACGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 107, 174, 282
HincII GTYRAC 2 cut(s) 256, 328
HindII GTYRAC 2 cut(s) 256, 328
HpaII CCGG 4 cut(s) 153, 164, 334, 369
Hpy166II GTNNAC 2 cut(s) 256, 328
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 2 cut(s) 104, 354
Hpy8I GTNNAC 2 cut(s) 256, 328
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 3 cut(s) 59, 260, 323
HpyCH4V TGCA 3 cut(s) 142, 170, 311
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 3 cut(s) 107, 174, 282
KpnI GGTACC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 5 cut(s) 17, 44, 166, 177, 347
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 1 cut(s) 114
MseI TTAA 1 cut(s) 180
MspI CCGG 4 cut(s) 153, 164, 334, 369
MspR9I CCNGG 4 cut(s) 32, 153, 154, 334
MvaI CCWGG 1 cut(s) 32
NciI CCSGG 3 cut(s) 153, 154, 334
NcoI CCATGG 1 cut(s) 278
NdeII GATC 1 cut(s) 62
NlaIII CATG 3 cut(s) 107, 174, 282
NlaIV GGNNCC 2 cut(s) 243, 347
PagI TCATGA 1 cut(s) 103
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 243, 347
PspPI GGNCC 2 cut(s) 241, 275
PsuI RGATCY 1 cut(s) 62
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SacI GAGCTC 1 cut(s) 298
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 241, 275
ScrFI CCNGG 4 cut(s) 32, 153, 154, 334
SduI GDGCHC 1 cut(s) 298
SetI ASST 2 cut(s) 298, 347
SinI GGWCC 2 cut(s) 241, 275
SmaI CCCGGG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 337
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 4 cut(s) 30, 151, 152, 332
StyI CCWWGG 2 cut(s) 76, 278
TaaI ACNGT 3 cut(s) 59, 260, 323
TaqI TCGA 2 cut(s) 120, 327
TasI AATT 1 cut(s) 114
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 254
TspMI CCCGGG 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 2 cut(s) 241, 275
VspI ATTAAT 1 cut(s) 180
XmaI CCCGGG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.