Rmu_sc0000560.1_g000013

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000560.1
OG0000308
Physical Location & Seq
Forward (+)
58507 .. 59358
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000560.1_g000013.1.cds

Sequence Viewer

Length: 852 bp
atgggagcgtattatgcgcctcattggaagtaccatggcgacttcaaggaaatcgatcgtccggcgttcagaaatcgggtcatgcgcatccgggttgagatagactacgtgaagcctctgttattccggaatcgattctgggtcgaagatgtagtccagttcatagtgcagttcaggtatgacaagatctttggttgttgcagcacttgtggactggttactcatgttggccttccctgctccgggccgaagctagttgaagatgatacaccggcagggacagtagcaccacccacagctttggctgccctacgggaacaacccgtaccaaaccctaacttcaacagggtggtgataaataaccaaaccctaattttcaaagctcaggtgccaaggagtataccagaagctcttctccctcagtcggtcatgaacatgcgacacaataagaaacaagtgcaaattcgggaactgcctgaaccaagacacaatgaaaatccaattaccggactgcgtaggattagagaagatgatgaggtaacaatctctcctaaaaaacttcgtttgagccttgctattgggaaaaaaaaattggatgcagtgagcatgggtttgatagagggaccttccaataacaatgaacaactcaaaaggaagaggggacgtcatattggcagtgtaaacaaactaccatatgggacagcaggcaaagggaagaatgcaaagacagatggagaatatgacaagacgaaaagcaagaagaccaacctgattctgaggttgttgattgctgatgagactgaggcaagtactcgctctaaccctacggggaaagagaatgtgcttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.99

Weight (kDa)

9.82

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 667
Acc16I TGCGCA 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 400
AccIII TCCGGA 1 cut(s) 126
AcsI RAATTY 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 664
AfaI GTAC 3 cut(s) 32, 327, 811
AfiI CCNNNNNNNGG 4 cut(s) 242, 243, 424, 506
AgsI TTSAA 4 cut(s) 46, 260, 343, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 4 cut(s) 253, 299, 383, 410
AluI AGCT 4 cut(s) 253, 299, 383, 410
Alw26I GTCTC 1 cut(s) 791
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 2 cut(s) 229, 245
ApeKI GCWGC 2 cut(s) 201, 305
ApoI RAATTY 1 cut(s) 462
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 173, 205
Asp700I GAANNNNTTC 2 cut(s) 134, 411
AspLEI GCGC 2 cut(s) 19, 87
AspS9I GGNCC 2 cut(s) 245, 623
AsuC2I CCSGG 2 cut(s) 92, 244
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 623
BanI GGYRCC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 767
BbvI GCAGC 2 cut(s) 213, 292
BccI CCATC 1 cut(s) 725
BcnI CCSGG 2 cut(s) 92, 244
BcoDI GTCTC 1 cut(s) 791
BfaI CTAG 1 cut(s) 254
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 202, 306
BlsI GCNGC 2 cut(s) 203, 307
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 2 cut(s) 92, 244
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 2 cut(s) 245, 623
BmiI GGNNCC 2 cut(s) 390, 624
BmrFI CCNGG 2 cut(s) 92, 244
BmsI GCATC 2 cut(s) 96, 586
BpiI GAAGAC 1 cut(s) 767
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 92, 244
Bsa29I ATCGAT 2 cut(s) 54, 133
BsaAI YACGTR 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 34, 392
BsaWI WCCGGW 2 cut(s) 126, 506
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 243, 424, 506
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 157, 219
BseAI TCCGGA 1 cut(s) 126
BseCI ATCGAT 2 cut(s) 54, 133
BseDI CCNNGG 2 cut(s) 34, 392
BseGI GGATG 2 cut(s) 87, 601
BseLI CCNNNNNNNGG 4 cut(s) 242, 243, 424, 506
BseMII CTCAG 4 cut(s) 398, 434, 767, 792
BseNI ACTGG 2 cut(s) 157, 219
BseXI GCAGC 2 cut(s) 213, 292
BsgI GTGCAG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 231, 247
BshNI GGYRCC 1 cut(s) 388
BshVI ATCGAT 2 cut(s) 54, 133
BsiEI CGRYCG 1 cut(s) 58
BsiSI CCGG 6 cut(s) 62, 91, 127, 243, 272, 507
BslFI GGGAC 4 cut(s) 292, 636, 675, 712
BslI CCNNNNNNNGG 4 cut(s) 242, 243, 424, 506
BsmAI GTCTC 1 cut(s) 791
BsmFI GGGAC 4 cut(s) 292, 636, 675, 712
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 2 cut(s) 231, 247
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 2 cut(s) 55, 186
Bsp19I CCATGG 1 cut(s) 34
BspANI GGCC 2 cut(s) 231, 247
BspCNI CTCAG 4 cut(s) 397, 433, 768, 793
BspDI ATCGAT 2 cut(s) 54, 133
BspEI TCCGGA 1 cut(s) 126
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 390, 624
BspQI GCTCTTC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 2 cut(s) 157, 219
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 34, 392
BssMI GATC 2 cut(s) 55, 186
BssNAI GTATAC 1 cut(s) 401
BssNI GRCGYC 1 cut(s) 664
BssT1I CCWWGG 2 cut(s) 34, 392
Bst1107I GTATAC 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 417, 650
BstACI GRCGYC 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 706, 846
BstDEI CTNAG 4 cut(s) 384, 420, 776, 801
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 87, 601
BstHHI GCGC 2 cut(s) 19, 87
BstKTI GATC 2 cut(s) 58, 189
BstMAI GTCTC 1 cut(s) 791
BstMBI GATC 2 cut(s) 55, 186
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 14, 237, 305
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 90, 242
BstV1I GCAGC 2 cut(s) 213, 292
BstV2I GAAGAC 1 cut(s) 767
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 401
Bsu15I ATCGAT 2 cut(s) 54, 133
BsuRI GGCC 2 cut(s) 231, 247
BsuTUI ATCGAT 2 cut(s) 54, 133
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 2 cut(s) 87, 601
BtsI GCAGTG 2 cut(s) 606, 682
BtsIMutI CAGTG 2 cut(s) 606, 682
Cac8I GCNNGC 2 cut(s) 706, 846
CciI TCATGA 1 cut(s) 429
CfoI GCGC 2 cut(s) 19, 87
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 245, 623
ClaI ATCGAT 2 cut(s) 54, 133
Csp6I GTAC 3 cut(s) 31, 326, 810
CviAII CATG 6 cut(s) 35, 82, 224, 430, 436, 607
CviJI RGCY 9 cut(s) 115, 231, 247, 253, 299, 305, 383, 410, 570
CviKI_1 RGCY 9 cut(s) 115, 231, 247, 253, 299, 305, 383, 410, 570
CviQI GTAC 3 cut(s) 31, 326, 810
DdeI CTNAG 4 cut(s) 384, 420, 776, 801
DpnI GATC 2 cut(s) 57, 188
DpnII GATC 2 cut(s) 55, 186
Eam1104I CTCTTC 2 cut(s) 417, 650
EarI CTCTTC 2 cut(s) 417, 650
Eco130I CCWWGG 2 cut(s) 34, 392
Eco47I GGWCC 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 623
EcoT14I CCWWGG 2 cut(s) 34, 392
ErhI CCWWGG 2 cut(s) 34, 392
FaeI CATG 6 cut(s) 38, 85, 227, 433, 439, 610
FaqI GGGAC 4 cut(s) 292, 636, 675, 712
FatI CATG 6 cut(s) 34, 81, 223, 429, 435, 606
FauNDI CATATG 1 cut(s) 694
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 202, 306
FokI GGATG 2 cut(s) 74, 608
Fsp4HI GCNGC 2 cut(s) 202, 306
FspAI RTGCGCAY 1 cut(s) 86
FspBI CTAG 1 cut(s) 254
FspI TGCGCA 1 cut(s) 86
GlaI GCGC 2 cut(s) 18, 86
GluI GCNGC 2 cut(s) 202, 306
HaeIII GGCC 2 cut(s) 231, 247
HapII CCGG 6 cut(s) 62, 91, 127, 243, 272, 507
HhaI GCGC 2 cut(s) 19, 87
Hin1I GRCGYC 1 cut(s) 664
Hin1II CATG 6 cut(s) 38, 85, 227, 433, 439, 610
Hin6I GCGC 2 cut(s) 17, 85
HinP1I GCGC 2 cut(s) 17, 85
HinfI GANTC 3 cut(s) 130, 135, 772
HpaII CCGG 6 cut(s) 62, 91, 127, 243, 272, 507
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 212, 401, 682
Hpy188I TCNGA 2 cut(s) 71, 777
Hpy188III TCNNGA 3 cut(s) 127, 430, 467
Hpy8I GTNNAC 3 cut(s) 212, 401, 682
HpyAV CCTTC 2 cut(s) 242, 636
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 2 cut(s) 108, 664
HpyCH4V TGCA 5 cut(s) 169, 201, 460, 599, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 237, 305
HpyF3I CTNAG 4 cut(s) 384, 420, 776, 801
HpySE526I ACGT 2 cut(s) 108, 664
Hsp92I GRCGYC 1 cut(s) 664
Hsp92II CATG 6 cut(s) 38, 85, 227, 433, 439, 610
HspAI GCGC 2 cut(s) 17, 85
Kpn2I TCCGGA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 55, 186
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 2 cut(s) 5, 245
Lsp1109I GCAGC 2 cut(s) 213, 292
LweI GCATC 2 cut(s) 96, 586
MaeI CTAG 1 cut(s) 254
MaeII ACGT 2 cut(s) 108, 664
MaeIII GTNAC 2 cut(s) 217, 538
MalI GATC 2 cut(s) 57, 188
MboI GATC 2 cut(s) 55, 186
MboII GAAGA 7 cut(s) 158, 272, 404, 539, 667, 727, 772
MflI RGATCY 1 cut(s) 186
MluCI AATT 4 cut(s) 372, 462, 501, 590
MnlI CCTC 8 cut(s) 30, 126, 429, 529, 613, 651, 771, 796
MroI TCCGGA 1 cut(s) 126
MroXI GAANNNNTTC 2 cut(s) 134, 411
MseI TTAA 1 cut(s) 850
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 6 cut(s) 62, 91, 127, 243, 272, 507
MspR9I CCNGG 2 cut(s) 92, 244
Mva1269I GAATGC 1 cut(s) 724
MwoI GCNNNNNNNGC 3 cut(s) 14, 237, 305
NciI CCSGG 2 cut(s) 92, 244
NcoI CCATGG 1 cut(s) 34
NdeI CATATG 1 cut(s) 694
NdeII GATC 2 cut(s) 55, 186
NlaIII CATG 6 cut(s) 38, 85, 227, 433, 439, 610
NlaIV GGNNCC 2 cut(s) 390, 624
NsbI TGCGCA 1 cut(s) 86
NspI RCATGY 1 cut(s) 439
PagI TCATGA 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 417
PctI GAATGC 1 cut(s) 724
PdmI GAANNNNTTC 2 cut(s) 134, 411
PfeI GAWTC 3 cut(s) 130, 135, 772
PkrI GCNGC 2 cut(s) 203, 307
Ple19I CGATCG 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 623
Psp5II RGGWCCY 1 cut(s) 623
PspN4I GGNNCC 2 cut(s) 390, 624
PspPI GGNCC 2 cut(s) 245, 623
PspPPI RGGWCCY 1 cut(s) 623
PsrI GAACNNNNNNTAC 2 cut(s) 309, 341
PsuI RGATCY 1 cut(s) 186
PvuI CGATCG 1 cut(s) 58
RsaI GTAC 3 cut(s) 32, 327, 811
RsaNI GTAC 3 cut(s) 31, 326, 810
RseI CAYNNNNRTG 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 850
SatI GCNGC 2 cut(s) 202, 306
Sau3AI GATC 2 cut(s) 55, 186
Sau96I GGNCC 2 cut(s) 245, 623
ScaI AGTACT 1 cut(s) 811
ScrFI CCNGG 2 cut(s) 92, 244
SfaNI GCATC 2 cut(s) 96, 586
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 4 cut(s) 372, 462, 501, 590
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 90, 242
StyI CCWWGG 2 cut(s) 34, 392
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 2 cut(s) 111, 667
TaqI TCGA 3 cut(s) 54, 133, 144
TaqII GACCGA 1 cut(s) 415
TasI AATT 4 cut(s) 372, 462, 501, 590
TatI WGTACW 1 cut(s) 809
TfiI GAWTC 3 cut(s) 130, 135, 772
Tru1I TTAA 1 cut(s) 850
Tru9I TTAA 1 cut(s) 850
TscAI CASTG 2 cut(s) 606, 682
TseI GCWGC 2 cut(s) 201, 305
TspDTI ATGAA 4 cut(s) 151, 446, 507, 654
TspRI CASTG 2 cut(s) 606, 682
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 400
XmnI GAANNNNTTC 2 cut(s) 134, 411
XspI CTAG 1 cut(s) 254
ZraI GACGTC 1 cut(s) 665
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.