Rroxscaffold_3G00219360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000308
Physical Location & Seq
Reverse (-)
1486298 .. 1488656
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219360.1

Sequence Viewer

Length: 612 bp
ATGAGCCACGCTCATGCTGCCGCCAACGGTACCGACAACTATCAAGGGTGTGACCCATGGAAACACCGCCGGACAAGCTATCGCCCGAGCTCCGGCTCAGCCCAAGATCACCGCCGACGCGCTGCGACAAGATCACCTAGCCGAAGCATCGAAGCTAAGAATAGAAGCATATCGGTCCCACATCGAAAGCAAGGAAGAGATCTCTTCCTCACCTATAAAAGGCCAAACCCCGCTTTTCAAACTCGTGTACCAAACTCGATCCCGGAACAATTCCTGCCTATTCTCGCTTTAAAACCACGCCGGAAGATCACCATTAGGGAATTAAATGGAATTGAAATGATGCTTGAACCGGTGATTGGTAAGATGAGGGATTGTGGTGAGTTGGAGGTCACCATCTTGCCTAAGAAGATGAAACTAAGCCTAGCATTGGGAAAAAAGAACCTGCAGTTTAATGATATGAGTTTGGTCCCAATGGAACAGTCTGCAGATGGTATTGTGAAGAATAAAAAGAGGGAGAGACCGATGGGAAGCAAAAACAGACTCCCGTTTGGTACTACAAGCAAGACAAAGGCTATGTGGCTGGATGGTAAGGCAGAAAGGAGAAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.23

Weight (kDa)

10.88

Isoelectric Point (pI)

70.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 450
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 1 cut(s) 120
AciI CCGC 4 cut(s) 21, 67, 112, 231
AclWI GGATC 1 cut(s) 253
AfaI GTAC 3 cut(s) 31, 249, 553
AfiI CCNNNNNNNGG 4 cut(s) 92, 219, 356, 427
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 3 cut(s) 239, 335, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 3 cut(s) 78, 90, 155
AluI AGCT 3 cut(s) 78, 90, 155
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 17, 122
AsiGI ACCGGT 1 cut(s) 349
Asp718I GGTACC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 175, 466
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 7 cut(s) 101, 126, 202, 301, 364, 382, 389
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 2 cut(s) 175, 466
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 92
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 4, 109
BccI CCATC 4 cut(s) 401, 482, 517, 578
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 2 cut(s) 138, 422
BfmI CTRYAG 2 cut(s) 443, 483
BfuAI ACCTGC 1 cut(s) 450
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 18, 21, 123
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 3 cut(s) 19, 22, 124
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 2 cut(s) 175, 466
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 2 cut(s) 175, 466
BmiI GGNNCC 3 cut(s) 31, 177, 468
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 156, 330
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 219, 356, 427
Bse118I RCCGGY 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 4 cut(s) 92, 219, 356, 427
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 4, 109
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 5 cut(s) 70, 93, 263, 301, 350
BslFI GGGAC 2 cut(s) 161, 452
BslI CCNNNNNNNGG 4 cut(s) 92, 219, 356, 427
BsmAI GTCTC 1 cut(s) 511
BsmFI GGGAC 2 cut(s) 161, 452
BsnI GGCC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 511
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 5 cut(s) 106, 131, 199, 258, 306
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 4 cut(s) 21, 67, 112, 231
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 31, 177, 468
BspMAI CTGCAG 2 cut(s) 447, 487
BspMI ACCTGC 1 cut(s) 450
BspPI GGATC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 5 cut(s) 106, 131, 199, 258, 306
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 29, 480
Bst6I CTCTTC 2 cut(s) 190, 209
BstDEI CTNAG 4 cut(s) 97, 156, 402, 416
BstDSI CCRYGG 1 cut(s) 56
BstEII GGTNACC 1 cut(s) 388
BstENI CCTNNNNNAGG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 5 cut(s) 109, 134, 202, 261, 309
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 5 cut(s) 106, 131, 199, 258, 306
BstMWI GCNNNNNNNGC 2 cut(s) 17, 75
BstPI GGTNACC 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 2 cut(s) 443, 483
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 4, 109
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 450
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 175, 466
CseI GACGC 1 cut(s) 126
Csp6I GTAC 3 cut(s) 30, 248, 552
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 2 cut(s) 14, 57
CviQI GTAC 3 cut(s) 30, 248, 552
DdeI CTNAG 4 cut(s) 97, 156, 402, 416
DpnI GATC 5 cut(s) 108, 133, 201, 260, 308
DpnII GATC 5 cut(s) 106, 131, 199, 258, 306
DraI TTTAAA 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 190, 209
EarI CTCTTC 2 cut(s) 190, 209
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 175, 466
Eco53kI GAGCTC 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 17, 60
FaiI YATR 6 cut(s) 15, 58, 170, 216, 458, 575
FaqI GGGAC 2 cut(s) 161, 452
FatI CATG 2 cut(s) 13, 56
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 18, 21, 123
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 18, 21, 123
FspBI CTAG 2 cut(s) 138, 422
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 18, 21, 123
HaeIII GGCC 1 cut(s) 223
HapII CCGG 5 cut(s) 70, 93, 263, 301, 350
HgaI GACGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 17, 60
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 540
HpaII CCGG 5 cut(s) 70, 93, 263, 301, 350
HphI GGTGA 7 cut(s) 101, 126, 202, 301, 364, 382, 389
Hpy166II GTNNAC 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 597
HpyCH4III ACNGT 2 cut(s) 29, 480
HpyCH4V TGCA 2 cut(s) 445, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 75
HpyF3I CTNAG 4 cut(s) 97, 156, 402, 416
Hsp92II CATG 2 cut(s) 17, 60
HspAI GCGC 1 cut(s) 120
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 106, 131, 199, 258, 306
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 83, 106, 276, 287, 314, 363, 455, 566
Lsp1109I GCAGC 2 cut(s) 4, 109
LweI GCATC 2 cut(s) 156, 330
MaeI CTAG 2 cut(s) 138, 422
MaeIII GTNAC 2 cut(s) 50, 388
MalI GATC 5 cut(s) 108, 133, 201, 260, 308
MboI GATC 5 cut(s) 106, 131, 199, 258, 306
MboII GAAGA 5 cut(s) 196, 207, 316, 418, 511
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 3 cut(s) 269, 320, 330
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 4 cut(s) 218, 360, 379, 504
MseI TTAA 3 cut(s) 290, 323, 450
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 5 cut(s) 70, 93, 263, 301, 350
MspR9I CCNGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 17, 75
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 56
NdeII GATC 5 cut(s) 106, 131, 199, 258, 306
NlaIII CATG 2 cut(s) 17, 60
NlaIV GGNNCC 3 cut(s) 31, 177, 468
NmuCI GTSAC 2 cut(s) 50, 388
PfoI TCCNGGA 1 cut(s) 261
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 3 cut(s) 19, 22, 124
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 31, 177, 468
PspPI GGNCC 2 cut(s) 175, 466
PstI CTGCAG 2 cut(s) 447, 487
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 31, 249, 553
RsaNI GTAC 3 cut(s) 30, 248, 552
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 3 cut(s) 290, 323, 450
SatI GCNGC 3 cut(s) 18, 21, 123
Sau3AI GATC 5 cut(s) 106, 131, 199, 258, 306
Sau96I GGNCC 2 cut(s) 175, 466
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 1 cut(s) 92
SetI ASST 8 cut(s) 80, 92, 139, 157, 215, 390, 444, 608
SfaNI GCATC 2 cut(s) 156, 330
SfcI CTRYAG 2 cut(s) 443, 483
SinI GGWCC 2 cut(s) 175, 466
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 3 cut(s) 269, 320, 330
SsiI CCGC 4 cut(s) 21, 67, 112, 231
SspMI CTAG 2 cut(s) 138, 422
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 29, 480
TaqI TCGA 3 cut(s) 150, 184, 257
TaqII GACCGA 2 cut(s) 163, 535
TasI AATT 3 cut(s) 269, 320, 330
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 3 cut(s) 290, 323, 450
Tru9I TTAA 3 cut(s) 290, 323, 450
TseFI GTSAC 2 cut(s) 50, 388
TseI GCWGC 2 cut(s) 17, 122
Tsp45I GTSAC 2 cut(s) 50, 388
TspDTI ATGAA 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 175, 466
XagI CCTNNNNNAGG 1 cut(s) 217
XspI CTAG 2 cut(s) 138, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.