Rmu_ssc0000065.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000065.1
OG0000308
Physical Location & Seq
Forward (+)
6570 .. 7838
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000065.1_g000003.1.cds

Sequence Viewer

Length: 1197 bp
atgacaacaatcgatgcaatggcagcccgcctggcctcctccctagccctggctgacgggaagaaaccggtggatctgcgtccatccaaggagatgagacaacctgaagcgttcatgattggcaagctccttacggcgaaggaatactctcgcagttcgttccagggaatgttccgagctgcatggaggattaatggcagcctccggaaaggcggaccatggggctataatagagctccgatagcccttgcaccgtatgatggtgtcagcccggcggtggatgtacccctcaagaagtcatcgtactggatgacgctacaaggaataccaccggcattcagatcggagcgcattatgcgcctcattggcagcacgattggcgacctcaaggaaatcgatcgtccgacgttcaggaatcgagttatgcgtattcgggttgagatcgactacgtgaaacctctgttgttccgtcgtcgattctgggtagaagatgaagtccagttcatagtgcagttcaggtatgacaagattttcggtcgatgcggcacttgtggattggttacttatgttggcctcccctgctccgggtcggaactagttgaagacaatgatacaccggtgggggcagtagcaccacccacggctttagctgtcatgagggaacaacctgtaccgaaccctaattctaatagggtggtgatcaataaccaaaccctaatattcaaagctcaggtgccaaggagtataccagaagctcttctttctcaatcggtgatgaacatgcgacgccacaagaggcaggtacagattcgggaactgcctgaaccaagactcaatgagaacccaatcaccggactccgtaggattcgggaagatgatgaggtaacagtctctcctaaaaaactccgtttgagtcttgccattggaaagaaaaatttggatgcagtgaacatgggattactagagggaccttccaatactatcgaacagcctaagaggaaaaggggacgcccaattggcagtgtaaacaaactaccatatgggacagcaggaaaaaggaagaatgcaaagaaagatggagaatctgacaagacgaagagcaagaagaccaacctgatgccgaggttgttggctgctgatgagtctgaggtaagtaccagctctaaccctaaggggaaagagcaggtgcttacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

398

Amino Acids

44.55

Weight (kDa)

10.17

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1174
Acc36I ACCTGC 2 cut(s) 790, 1174
AccB1I GGYRCC 1 cut(s) 733
AccI GTMKAC 1 cut(s) 745
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 4 cut(s) 28, 213, 275, 543
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 2 cut(s) 787, 1009
AfaI GTAC 5 cut(s) 285, 305, 672, 804, 1156
AfiI CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
AgeI ACCGGT 2 cut(s) 67, 616
AgsI TTSAA 2 cut(s) 602, 724
AhlI ACTAGT 1 cut(s) 595
AjnI CCWGG 3 cut(s) 30, 48, 162
AluBI AGCT 7 cut(s) 127, 179, 236, 650, 728, 755, 1161
AluI AGCT 7 cut(s) 127, 179, 236, 650, 728, 755, 1161
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 91, 895
AlwI GGATC 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 2 cut(s) 33, 571
ApeKI GCWGC 5 cut(s) 23, 179, 198, 369, 1133
ApoI RAATTY 1 cut(s) 934
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AseI ATTAAT 1 cut(s) 192
AsiGI ACCGGT 2 cut(s) 67, 616
Asp700I GAANNNNTTC 1 cut(s) 756
AspLEI GCGC 2 cut(s) 351, 360
AspS9I GGNCC 2 cut(s) 215, 968
AsuC2I CCSGG 2 cut(s) 272, 586
AsuHPI GGTGA 3 cut(s) 709, 784, 841
AvaII GGWCC 2 cut(s) 215, 968
AxyI CCTNAGG 1 cut(s) 1170
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 238
BarI GAAGNNNNNNTAC 2 cut(s) 287, 319
BbsI GAAGAC 2 cut(s) 609, 1112
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 5 cut(s) 35, 166, 210, 381, 1120
BccI CCATC 3 cut(s) 91, 254, 1070
BceAI ACGGC 2 cut(s) 150, 657
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 3 cut(s) 32, 50, 164
BclI TGATCA 1 cut(s) 699
BcnI CCSGG 2 cut(s) 272, 586
BcoDI GTCTC 2 cut(s) 91, 895
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 3 cut(s) 44, 596, 962
BfuAI ACCTGC 2 cut(s) 790, 1174
BglI GCCNNNNNGGC 3 cut(s) 32, 366, 1017
BisI GCNGC 6 cut(s) 24, 180, 199, 370, 544, 1134
BlsI GCNGC 6 cut(s) 25, 181, 200, 371, 545, 1135
Bme1390I CCNGG 5 cut(s) 32, 50, 164, 272, 586
Bme18I GGWCC 2 cut(s) 215, 968
BmgT120I GGNCC 2 cut(s) 215, 968
BmiI GGNNCC 2 cut(s) 735, 969
BmrFI CCNGG 5 cut(s) 32, 50, 164, 272, 586
BmsI GCATC 4 cut(s) 4, 530, 931, 1107
BpiI GAAGAC 2 cut(s) 609, 1112
Bpu10I CCTNAGC 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 275, 371
BpuMI CCSGG 2 cut(s) 272, 586
Bsa29I ATCGAT 2 cut(s) 12, 396
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 2 cut(s) 787, 1009
BsaJI CCNNGG 7 cut(s) 48, 87, 163, 218, 639, 737, 1121
BsaWI WCCGGW 4 cut(s) 67, 204, 616, 851
BsaXI ACNNNNNCTCC 2 cut(s) 877, 907
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
Bse118I RCCGGY 3 cut(s) 67, 331, 616
Bse1I ACTGG 2 cut(s) 311, 499
Bse21I CCTNAGG 1 cut(s) 1170
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 3 cut(s) 32, 50, 164
BseCI ATCGAT 2 cut(s) 12, 396
BseDI CCNNGG 7 cut(s) 48, 87, 163, 218, 639, 737, 1121
BseGI GGATG 4 cut(s) 83, 286, 315, 946
BseLI CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 743, 1137
BseNI ACTGG 2 cut(s) 311, 499
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 5 cut(s) 35, 166, 210, 381, 1120
BsgI GTGCAG 1 cut(s) 530
Bsh1285I CGRYCG 2 cut(s) 400, 538
BshFI GGCC 2 cut(s) 35, 573
BshNI GGYRCC 1 cut(s) 733
BshTI ACCGGT 2 cut(s) 67, 616
BshVI ATCGAT 2 cut(s) 12, 396
BsiEI CGRYCG 2 cut(s) 400, 538
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
BslFI GGGAC 3 cut(s) 981, 1020, 1057
BslI CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
BsmAI GTCTC 2 cut(s) 91, 895
BsmFI GGGAC 3 cut(s) 981, 1020, 1057
BsmI GAATGC 2 cut(s) 335, 1069
BsnI GGCC 2 cut(s) 35, 573
Bsp1286I GDGCHC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 5 cut(s) 73, 341, 397, 441, 699
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 4 cut(s) 28, 213, 275, 543
BspANI GGCC 2 cut(s) 35, 573
BspCNI CTCAG 2 cut(s) 742, 1138
BspDI ATCGAT 2 cut(s) 12, 396
BspEI TCCGGA 1 cut(s) 204
BspHI TCATGA 2 cut(s) 114, 654
BspLI GGNNCC 2 cut(s) 735, 969
BspMI ACCTGC 2 cut(s) 790, 1174
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 2 cut(s) 762, 1091
BspT107I GGYRCC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 3 cut(s) 67, 331, 616
BsrI ACTGG 2 cut(s) 311, 499
BssAI RCCGGY 3 cut(s) 67, 331, 616
BssECI CCNNGG 7 cut(s) 48, 87, 163, 218, 639, 737, 1121
BssMI GATC 5 cut(s) 73, 341, 397, 441, 699
BssNAI GTATAC 1 cut(s) 746
BssNI GRCGYC 2 cut(s) 787, 1009
BssT1I CCWWGG 3 cut(s) 87, 218, 737
Bst1107I GTATAC 1 cut(s) 746
Bst2UI CCWGG 3 cut(s) 32, 50, 164
Bst4CI ACNGT 2 cut(s) 255, 889
Bst6I CTCTTC 2 cut(s) 762, 1091
BstACI GRCGYC 2 cut(s) 787, 1009
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 28, 125
BstDEI CTNAG 4 cut(s) 729, 993, 1146, 1170
BstDSI CCRYGG 2 cut(s) 218, 639
BstF5I GGATG 4 cut(s) 83, 286, 315, 946
BstHHI GCGC 2 cut(s) 351, 360
BstKTI GATC 5 cut(s) 76, 344, 400, 444, 702
BstMAI GTCTC 2 cut(s) 91, 895
BstMBI GATC 5 cut(s) 73, 341, 397, 441, 699
BstMCI CGRYCG 2 cut(s) 400, 538
BstMWI GCNNNNNNNGC 9 cut(s) 23, 32, 242, 355, 357, 366, 378, 579, 1017
BstNI CCWGG 3 cut(s) 32, 50, 164
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 5 cut(s) 30, 48, 162, 270, 584
BstV1I GCAGC 5 cut(s) 35, 166, 210, 381, 1120
BstV2I GAAGAC 2 cut(s) 609, 1112
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 746
Bsu15I ATCGAT 2 cut(s) 12, 396
Bsu36I CCTNAGG 1 cut(s) 1170
BsuRI GGCC 2 cut(s) 35, 573
BsuTUI ATCGAT 2 cut(s) 12, 396
BtgI CCRYGG 2 cut(s) 218, 639
BtsCI GGATG 4 cut(s) 83, 286, 315, 946
BtsI GCAGTG 2 cut(s) 951, 1027
BtsIMutI CAGTG 2 cut(s) 951, 1027
BveI ACCTGC 2 cut(s) 790, 1174
Cac8I GCNNGC 2 cut(s) 28, 125
CciI TCATGA 2 cut(s) 114, 654
CfoI GCGC 2 cut(s) 351, 360
Cfr10I RCCGGY 3 cut(s) 67, 331, 616
Cfr13I GGNCC 2 cut(s) 215, 968
ClaI ATCGAT 2 cut(s) 12, 396
CseI GACGC 4 cut(s) 68, 322, 795, 1017
Csp6I GTAC 5 cut(s) 284, 304, 671, 803, 1155
CspAI ACCGGT 2 cut(s) 67, 616
CviAII CATG 6 cut(s) 115, 183, 219, 655, 781, 952
CviQI GTAC 5 cut(s) 284, 304, 671, 803, 1155
DdeI CTNAG 4 cut(s) 729, 993, 1146, 1170
DpnI GATC 5 cut(s) 75, 343, 399, 443, 701
DpnII GATC 5 cut(s) 73, 341, 397, 441, 699
Eam1104I CTCTTC 2 cut(s) 762, 1091
EarI CTCTTC 2 cut(s) 762, 1091
EciI GGCGGA 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 87, 218, 737
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 215, 968
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 1170
EcoICRI GAGCTC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 968
EcoRII CCWGG 3 cut(s) 30, 48, 162
EcoT14I CCWWGG 3 cut(s) 87, 218, 737
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 3 cut(s) 87, 218, 737
FaeI CATG 6 cut(s) 118, 186, 222, 658, 784, 955
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FaqI GGGAC 3 cut(s) 981, 1020, 1057
FatI CATG 6 cut(s) 114, 182, 218, 654, 780, 951
FauI CCCGC 1 cut(s) 35
FauNDI CATATG 1 cut(s) 1039
FbaI TGATCA 1 cut(s) 699
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 6 cut(s) 24, 180, 199, 370, 544, 1134
FokI GGATG 4 cut(s) 70, 293, 322, 953
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 24, 180, 199, 370, 544, 1134
FspBI CTAG 3 cut(s) 44, 596, 962
GlaI GCGC 2 cut(s) 350, 359
GluI GCNGC 6 cut(s) 24, 180, 199, 370, 544, 1134
HaeIII GGCC 2 cut(s) 35, 573
HapII CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
HgaI GACGC 4 cut(s) 68, 322, 795, 1017
HhaI GCGC 2 cut(s) 351, 360
Hin1I GRCGYC 2 cut(s) 787, 1009
Hin1II CATG 6 cut(s) 118, 186, 222, 658, 784, 955
Hin6I GCGC 2 cut(s) 349, 358
HinP1I GCGC 2 cut(s) 349, 358
HinfI GANTC 9 cut(s) 415, 477, 808, 831, 855, 865, 913, 1082, 1142
HpaII CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
HphI GGTGA 3 cut(s) 709, 784, 841
Hpy166II GTNNAC 3 cut(s) 746, 949, 1027
Hpy188I TCNGA 8 cut(s) 176, 240, 341, 346, 405, 592, 1087, 1147
Hpy188III TCNNGA 7 cut(s) 115, 205, 292, 412, 655, 812, 869
Hpy8I GTNNAC 3 cut(s) 746, 949, 1027
Hpy99I CGWCG 4 cut(s) 409, 474, 477, 789
HpyAV CCTTC 2 cut(s) 133, 981
HpyCH4III ACNGT 2 cut(s) 255, 889
HpyCH4IV ACGT 2 cut(s) 407, 450
HpyCH4V TGCA 6 cut(s) 17, 182, 251, 511, 944, 1067
HpyF10VI GCNNNNNNNGC 9 cut(s) 23, 32, 242, 355, 357, 366, 378, 579, 1017
HpyF3I CTNAG 4 cut(s) 729, 993, 1146, 1170
HpySE526I ACGT 2 cut(s) 407, 450
Hsp92I GRCGYC 2 cut(s) 787, 1009
Hsp92II CATG 6 cut(s) 118, 186, 222, 658, 784, 955
HspAI GCGC 2 cut(s) 349, 358
Kpn2I TCCGGA 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 5 cut(s) 73, 341, 397, 441, 699
LguI GCTCTTC 2 cut(s) 762, 1091
LmnI GCTCC 4 cut(s) 132, 241, 346, 587
Lsp1109I GCAGC 5 cut(s) 35, 166, 210, 381, 1120
LweI GCATC 4 cut(s) 4, 530, 931, 1107
MaeI CTAG 3 cut(s) 44, 596, 962
MaeII ACGT 2 cut(s) 407, 450
MaeIII GTNAC 2 cut(s) 559, 883
MalI GATC 5 cut(s) 75, 343, 399, 443, 701
MboI GATC 5 cut(s) 73, 341, 397, 441, 699
MboII GAAGA 8 cut(s) 73, 500, 614, 749, 884, 1072, 1108, 1117
MfeI CAATTG 1 cut(s) 1014
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 3 cut(s) 682, 934, 1014
MlyI GAGTC 4 cut(s) 825, 849, 922, 1151
MmeI TCCRAC 2 cut(s) 428, 570
MroI TCCGGA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 756
MseI TTAA 2 cut(s) 192, 1195
MspI CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
MspR9I CCNGG 5 cut(s) 32, 50, 164, 272, 586
MunI CAATTG 1 cut(s) 1014
Mva1269I GAATGC 2 cut(s) 335, 1069
MvaI CCWGG 3 cut(s) 32, 50, 164
MwoI GCNNNNNNNGC 9 cut(s) 23, 32, 242, 355, 357, 366, 378, 579, 1017
NciI CCSGG 2 cut(s) 272, 586
NcoI CCATGG 1 cut(s) 218
NdeI CATATG 1 cut(s) 1039
NdeII GATC 5 cut(s) 73, 341, 397, 441, 699
NlaIII CATG 6 cut(s) 118, 186, 222, 658, 784, 955
NlaIV GGNNCC 2 cut(s) 735, 969
NmeAIII GCCGAG 1 cut(s) 1146
NspI RCATGY 1 cut(s) 784
PagI TCATGA 2 cut(s) 114, 654
PaqCI CACCTGC 1 cut(s) 1174
PciSI GCTCTTC 2 cut(s) 762, 1091
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 2 cut(s) 335, 1069
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 5 cut(s) 415, 477, 808, 865, 1082
PinAI ACCGGT 2 cut(s) 67, 616
PkrI GCNGC 6 cut(s) 25, 181, 200, 371, 545, 1135
Ple19I CGATCG 1 cut(s) 400
PleI GAGTC 4 cut(s) 825, 849, 921, 1150
PpsI GAGTC 4 cut(s) 825, 849, 921, 1150
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 968
PshBI ATTAAT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 968
Psp6I CCWGG 3 cut(s) 30, 48, 162
PspGI CCWGG 3 cut(s) 30, 48, 162
PspN4I GGNNCC 2 cut(s) 735, 969
PspPI GGNCC 2 cut(s) 215, 968
PspPPI RGGWCCY 1 cut(s) 968
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 1 cut(s) 400
RsaI GTAC 5 cut(s) 285, 305, 672, 804, 1156
RsaNI GTAC 5 cut(s) 284, 304, 671, 803, 1155
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 2 cut(s) 762, 1091
SaqAI TTAA 2 cut(s) 192, 1195
SatI GCNGC 6 cut(s) 24, 180, 199, 370, 544, 1134
Sau3AI GATC 5 cut(s) 73, 341, 397, 441, 699
Sau96I GGNCC 2 cut(s) 215, 968
SchI GAGTC 4 cut(s) 825, 849, 922, 1151
ScrFI CCNGG 5 cut(s) 32, 50, 164, 272, 586
SduI GDGCHC 1 cut(s) 238
SfaNI GCATC 4 cut(s) 4, 530, 931, 1107
SgrAI CRCCGGYG 1 cut(s) 616
SinI GGWCC 2 cut(s) 215, 968
SmlI CTYRAG 2 cut(s) 290, 386
SmoI CTYRAG 2 cut(s) 290, 386
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 3 cut(s) 682, 934, 1014
SsiI CCGC 4 cut(s) 28, 213, 275, 543
SspI AATATT 1 cut(s) 720
SspMI CTAG 3 cut(s) 44, 596, 962
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 5 cut(s) 30, 48, 162, 270, 584
StyI CCWWGG 3 cut(s) 87, 218, 737
TaaI ACNGT 2 cut(s) 255, 889
TaiI ACGT 2 cut(s) 410, 453
TaqI TCGA 7 cut(s) 12, 396, 418, 444, 475, 538, 984
TaqII GACCGA 1 cut(s) 524
TasI AATT 3 cut(s) 682, 934, 1014
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 5 cut(s) 415, 477, 808, 865, 1082
Tru1I TTAA 2 cut(s) 192, 1195
Tru9I TTAA 2 cut(s) 192, 1195
TscAI CASTG 2 cut(s) 951, 1027
TseI GCWGC 5 cut(s) 23, 179, 198, 369, 1133
TspDTI ATGAA 4 cut(s) 103, 493, 507, 791
TspGWI ACGGA 3 cut(s) 458, 848, 896
TspRI CASTG 2 cut(s) 951, 1027
VpaK11BI GGWCC 2 cut(s) 215, 968
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 1 cut(s) 934
XceI RCATGY 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 3 cut(s) 44, 596, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.