Rmu_sc0004209.1_g000004

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004209.1
OG0000308
Physical Location & Seq
Reverse (-)
16492 .. 16980
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004209.1_g000004.1.cds

Sequence Viewer

Length: 489 bp
atggaggacattgacgtgatgacgcgactgacatcttctctggttctcacggaggggaagaatgctgtggatctaaggccttccaaaagtaagggtctccagttgtcagaggtctatatggttggcaaattactcactactcggaagtataagaggagatcattttttaagatgtttcaatctgcttggaacatcaatggagattttaaggttgagcctgtcgaaggggatcaggtcctcttcaccttctttgatctagttgacagaaccccggtatggtgcggtggtccgtggggctgcaaccgtgccccaatagagctagaagaatacgactgcattgcctatatcgacttagttccgctactaccctcatcgtattggatcactctgctaaacatgtcgttggctttctgttctgaaagaatgatgcacatgattggcagcacgctcagtgatttgaatgagtgggataggccaacatttcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

162

Amino Acids

18.7

Weight (kDa)

5.04

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AciI CCGC 2 cut(s) 282, 359
AclWI GGATC 3 cut(s) 78, 237, 389
AfiI CCNNNNNNNGG 2 cut(s) 224, 276
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 2 cut(s) 179, 460
AjiI CACGTC 1 cut(s) 16
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 3 cut(s) 78, 237, 389
AoxI GGCC 2 cut(s) 77, 473
ApeKI GCWGC 2 cut(s) 297, 441
AspS9I GGNCC 2 cut(s) 235, 287
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 2 cut(s) 235, 287
BaeGI GKGCMC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 284, 453
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 257, 320
BisI GCNGC 2 cut(s) 298, 442
BlsI GCNGC 2 cut(s) 299, 443
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 2 cut(s) 235, 287
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 235, 287
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 270, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 276
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 270, 290
BseLI CCNNNNNNNGG 2 cut(s) 224, 276
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 2 cut(s) 284, 453
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 79, 475
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 224, 276
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 79, 475
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 5 cut(s) 70, 158, 229, 253, 381
BspACI CCGC 2 cut(s) 282, 359
BspANI GGCC 2 cut(s) 79, 475
BspCNI CTCAG 1 cut(s) 462
BspFNI CGCG 1 cut(s) 25
BspPI GGATC 3 cut(s) 78, 237, 389
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 270, 290
BssMI GATC 5 cut(s) 70, 158, 229, 253, 381
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 3 cut(s) 74, 352, 449
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 25
BstKTI GATC 5 cut(s) 73, 161, 232, 256, 384
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 5 cut(s) 70, 158, 229, 253, 381
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 284, 453
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 79, 475
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 235, 287
CseI GACGC 1 cut(s) 31
CviAII CATG 2 cut(s) 397, 433
CviJI RGCY 6 cut(s) 79, 217, 297, 319, 407, 475
CviKI_1 RGCY 6 cut(s) 79, 217, 297, 319, 407, 475
DdeI CTNAG 3 cut(s) 74, 352, 449
DpnI GATC 5 cut(s) 72, 160, 231, 255, 383
DpnII GATC 5 cut(s) 70, 158, 229, 253, 381
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 235, 287
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 235
FaeI CATG 2 cut(s) 400, 436
FaiI YATR 7 cut(s) 117, 119, 150, 277, 345, 398, 434
FatI CATG 2 cut(s) 396, 432
Fnu4HI GCNGC 2 cut(s) 298, 442
Fsp4HI GCNGC 2 cut(s) 298, 442
FspBI CTAG 2 cut(s) 257, 320
GluI GCNGC 2 cut(s) 298, 442
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 79, 475
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 400, 436
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 109, 144, 418
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 3 cut(s) 90, 218, 256
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 300, 336, 430
HpyF3I CTNAG 3 cut(s) 74, 352, 449
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 400, 436
Kzo9I GATC 5 cut(s) 70, 158, 229, 253, 381
LpnPI CCDG 5 cut(s) 26, 113, 218, 231, 285
Lsp1109I GCAGC 2 cut(s) 284, 453
LweI GCATC 1 cut(s) 417
MaeI CTAG 2 cut(s) 257, 320
MaeII ACGT 1 cut(s) 15
MalI GATC 5 cut(s) 72, 160, 231, 255, 383
MboI GATC 5 cut(s) 70, 158, 229, 253, 381
MboII GAAGA 4 cut(s) 27, 70, 232, 335
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 1 cut(s) 128
MnlI CCTC 5 cut(s) 46, 103, 147, 248, 379
MseI TTAA 2 cut(s) 168, 207
MslI CAYNNNNRTG 2 cut(s) 14, 484
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 67
MvnI CGCG 1 cut(s) 25
NciI CCSGG 1 cut(s) 272
NdeII GATC 5 cut(s) 70, 158, 229, 253, 381
NlaIII CATG 2 cut(s) 400, 436
NspI RCATGY 1 cut(s) 400
PceI AGGCCT 1 cut(s) 79
PciI ACATGT 1 cut(s) 396
PctI GAATGC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 299, 443
PpuMI RGGWCCY 1 cut(s) 235
PscI ACATGT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 235
PspPI GGNCC 2 cut(s) 235, 287
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 14, 484
SaqAI TTAA 2 cut(s) 168, 207
SatI GCNGC 2 cut(s) 298, 442
Sau3AI GATC 5 cut(s) 70, 158, 229, 253, 381
Sau96I GGNCC 2 cut(s) 235, 287
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 310
SetI ASST 6 cut(s) 18, 114, 213, 237, 248, 321
SfaNI GCATC 1 cut(s) 417
SinI GGWCC 2 cut(s) 235, 287
SmiMI CAYNNNNRTG 2 cut(s) 14, 484
Sse9I AATT 1 cut(s) 128
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 2 cut(s) 282, 359
SspMI CTAG 2 cut(s) 257, 320
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 222, 348
TasI AATT 1 cut(s) 128
Tru1I TTAA 2 cut(s) 168, 207
Tru9I TTAA 2 cut(s) 168, 207
TscAI CASTG 1 cut(s) 457
TseI GCWGC 2 cut(s) 297, 441
TspGWI ACGGA 2 cut(s) 65, 279
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 235, 287
XagI CCTNNNNNAGG 1 cut(s) 222
XceI RCATGY 1 cut(s) 400
XspI CTAG 2 cut(s) 257, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.