Rh1AG029600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000308
Physical Location & Seq
Forward (+)
5377293 .. 5377583
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG029600.1

Sequence Viewer

Length: 291 bp
ATGGCTGAAACCTTGGCTTCTATGTCTGCAGGCTCTTTCCTTCCTCAGAAGACTCGACGTCAAGTCACCATCCGAGAAATTGAAGAAAACAATGAGCATGCAGCTCCAATTACGGGGAAGAGGAGGAAAAGAACAGGTGATGTTTCGGTGTCTCCGAAGAAGCCAAGGCTGAGTTTAGCAATTGGTAAGCACAATATTGATGCTGCCACTATGGGTTTAATTGAAACTGCTATGAGTAAGCCCAATAAGAAGAAGCGTGGTCGACCTGAAATTGCCCGTAAAGTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.63

Weight (kDa)

11.02

Isoelectric Point (pI)

74.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 83, 224
AhdI GACNNNNNGTC 2 cut(s) 57, 62
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 101, 203
AsuHPI GGTGA 2 cut(s) 58, 149
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 113, 190
BccI CCATC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 102, 204
BlsI GCNGC 2 cut(s) 103, 205
BmeRI GACNNNNNGTC 2 cut(s) 57, 62
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 12, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 12, 164
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 2 cut(s) 59, 161
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 113, 190
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 58, 162
BspMAI CTGCAG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 12, 164
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 12, 164
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 31, 99
BstDEI CTNAG 2 cut(s) 45, 170
BstF5I GGATG 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 113, 190
BstV2I GAAGAC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 31, 99
CviAII CATG 1 cut(s) 98
CviJI RGCY 7 cut(s) 5, 17, 33, 104, 163, 169, 241
CviKI_1 RGCY 7 cut(s) 5, 17, 33, 104, 163, 169, 241
DdeI CTNAG 2 cut(s) 45, 170
DriI GACNNNNNGTC 2 cut(s) 57, 62
Eam1104I CTCTTC 1 cut(s) 113
Eam1105I GACNNNNNGTC 2 cut(s) 57, 62
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 12, 164
EcoT14I CCWWGG 2 cut(s) 12, 164
ErhI CCWWGG 2 cut(s) 12, 164
FaeI CATG 1 cut(s) 101
FaiI YATR 4 cut(s) 23, 99, 212, 233
FatI CATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 102, 204
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 102, 204
GluI GCNGC 2 cut(s) 102, 204
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 101
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 1 cut(s) 52
HphI GGTGA 2 cut(s) 58, 149
Hpy166II GTNNAC 2 cut(s) 263, 286
Hpy188I TCNGA 3 cut(s) 48, 74, 156
Hpy8I GTNNAC 2 cut(s) 263, 286
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 29, 101
HpyF3I CTNAG 2 cut(s) 45, 170
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 101
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 15, 120, 279
Lsp1109I GCAGC 2 cut(s) 113, 190
LweI GCATC 1 cut(s) 190
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 5 cut(s) 61, 95, 130, 169, 262
MfeI CAATTG 1 cut(s) 180
MluCI AATT 5 cut(s) 78, 108, 180, 219, 270
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 3 cut(s) 54, 114, 117
MseI TTAA 1 cut(s) 218
MunI CAATTG 1 cut(s) 180
NlaIII CATG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 101
PaeI GCATGC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PkrI GCNGC 2 cut(s) 103, 205
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 31
SalI GTCGAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 2 cut(s) 102, 204
SchI GAGTC 1 cut(s) 46
SetI ASST 5 cut(s) 14, 61, 106, 139, 268
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 27
SphI GCATGC 1 cut(s) 101
Sse9I AATT 5 cut(s) 78, 108, 180, 219, 270
SspI AATATT 1 cut(s) 196
StyI CCWWGG 2 cut(s) 12, 164
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 55, 262
TasI AATT 5 cut(s) 78, 108, 180, 219, 270
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 101, 203
Tsp45I GTSAC 1 cut(s) 64
XceI RCATGY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 262
ZraI GACGTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.