Rmu_co8378475.1_g000001

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8378475.1
OG0000308
Physical Location & Seq
Reverse (-)
1 .. 1114
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8378475.1_g000001.1.cds

Sequence Viewer

Length: 924 bp
atgggaatgtttaggtctgtgtggagggttaatggaactcttcgtgtcgaagaagctggagaagatgatcatgtcctgatttccttttcagatccaatagacaagactagggtttggaagggtggcccttggggtttcaatcgagctccgatcgctttggcggagtatgatggagtgagcccggtgctgtcagtatcgctgcagaagtcatcggattggatgacgttgatgggagttcctccggcgtttagatatgaaaggatcatgcgcttgataggcagcacgatcggggagttcatgaagtttgaccggacggctttcaggaccagggtgctgcgtatcagagtagagatcgcctatacgacgccattgcttctcaagcgtcgcttctgggttgaggacgaggtccaatttgtggtgcagttcaaatacgacaagttgtttgggcgatgtagtcattgtgggttcgttacctatatgggattgccatgcttcgggcctgagttgatggaggatgagcagggaccagtgggtacggtggagccgccgacagccttggtggtgatgcgtggagggccggaaacaagtgctactacaactatggttttggcaaatggccaaaccctagttttccaagcccaggttccccgggagcttgaggagccacggcaggaggtaccacctattaagggggtgcgtcgtcatagagaagatgatgaggtaaccatctcccctaaaaagcttcgtctcagtttagctgtgggtaagagaactctagatgcagtgactatgggccttattgaagcacttgttggtgctaatgagcaaccaaagcgaaagcgtggtcgtcttgtaggaagtctcaacaaaatgtcgtataatactgcaggaaagagtaaaatggttaagagggtggtgaccaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

308

Amino Acids

34.71

Weight (kDa)

9.65

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 676
AccB7I CCANNNNNTGG 1 cut(s) 415
AciI CCGC 2 cut(s) 161, 545
AclWI GGATC 2 cut(s) 86, 269
AcoI YGGCCR 1 cut(s) 616
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 2 cut(s) 535, 678
AfiI CCNNNNNNNGG 4 cut(s) 415, 494, 640, 689
AgsI TTSAA 3 cut(s) 139, 427, 803
AjnI CCWGG 2 cut(s) 326, 639
AjuI GAANNNNNNNTTGG 4 cut(s) 627, 659, 795, 827
AluBI AGCT 5 cut(s) 56, 146, 655, 742, 758
AluI AGCT 5 cut(s) 56, 146, 655, 742, 758
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 752, 866
AlwI GGATC 2 cut(s) 86, 269
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 5 cut(s) 124, 497, 575, 616, 793
ApeKI GCWGC 3 cut(s) 199, 279, 334
ArsI GACNNNNNNTTYG 4 cut(s) 425, 457, 829, 861
Asp718I GGTACC 1 cut(s) 676
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 7 cut(s) 125, 324, 406, 497, 524, 575, 793
AsuC2I CCSGG 3 cut(s) 182, 649, 650
AsuHPI GGTGA 1 cut(s) 574
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 3 cut(s) 324, 406, 524
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 2 cut(s) 148, 182
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 186, 291, 321
BccI CCATC 4 cut(s) 164, 223, 502, 734
BceAI ACGGC 2 cut(s) 330, 683
BcgI CGANNNNNNTGC 4 cut(s) 268, 302, 352, 386
BciT130I CCWGG 2 cut(s) 328, 641
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 3 cut(s) 182, 649, 650
BcoDI GTCTC 2 cut(s) 752, 866
BfaI CTAG 3 cut(s) 108, 626, 776
BfmI CTRYAG 2 cut(s) 200, 885
BisI GCNGC 4 cut(s) 200, 280, 335, 545
BlsI GCNGC 4 cut(s) 201, 281, 336, 546
Bme1390I CCNGG 5 cut(s) 182, 328, 641, 649, 650
Bme18I GGWCC 3 cut(s) 324, 406, 524
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 7 cut(s) 125, 324, 406, 497, 524, 575, 793
BmiI GGNNCC 5 cut(s) 525, 543, 645, 663, 678
BmrFI CCNGG 5 cut(s) 182, 328, 641, 649, 650
BmsI GCATC 2 cut(s) 555, 769
BpmI CTGGAG 1 cut(s) 78
BpuEI CTTGAG 2 cut(s) 362, 677
BpuMI CCSGG 3 cut(s) 182, 649, 650
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 7 cut(s) 128, 327, 555, 639, 647, 648, 665
BsaWI WCCGGW 1 cut(s) 309
Bsc4I CCNNNNNNNGG 4 cut(s) 415, 494, 640, 689
Bse1I ACTGG 1 cut(s) 527
Bse3DI GCAATG 1 cut(s) 368
BseBI CCWGG 2 cut(s) 328, 641
BseDI CCNNGG 7 cut(s) 128, 327, 555, 639, 647, 648, 665
BseGI GGATG 2 cut(s) 225, 520
BseLI CCNNNNNNNGG 4 cut(s) 415, 494, 640, 689
BseMI GCAATG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 492, 763
BseNI ACTGG 1 cut(s) 527
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 3 cut(s) 186, 291, 321
BsgI GTGCAG 1 cut(s) 440
Bsh1285I CGRYCG 2 cut(s) 153, 288
BshFI GGCC 5 cut(s) 126, 499, 577, 618, 795
BshNI GGYRCC 1 cut(s) 676
BsiEI CGRYCG 2 cut(s) 153, 288
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 5 cut(s) 182, 242, 310, 578, 649
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 4 cut(s) 415, 494, 640, 689
BsmAI GTCTC 2 cut(s) 752, 866
BsmBI CGTCTC 1 cut(s) 752
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 5 cut(s) 126, 499, 577, 618, 795
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 148, 182
Bsp143I GATC 6 cut(s) 67, 91, 150, 261, 285, 351
BspACI CCGC 2 cut(s) 161, 545
BspANI GGCC 5 cut(s) 126, 499, 577, 618, 795
BspCNI CTCAG 2 cut(s) 493, 762
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 5 cut(s) 525, 543, 645, 663, 678
BspMAI CTGCAG 2 cut(s) 204, 889
BspPI GGATC 2 cut(s) 86, 269
BspT107I GGYRCC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 368
BsrI ACTGG 1 cut(s) 527
BssECI CCNNGG 7 cut(s) 128, 327, 555, 639, 647, 648, 665
BssMI GATC 6 cut(s) 67, 91, 150, 261, 285, 351
BssNI GRCGYC 1 cut(s) 365
BssT1I CCWWGG 2 cut(s) 128, 555
Bst2UI CCWGG 2 cut(s) 328, 641
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 501, 749
BstDSI CCRYGG 1 cut(s) 665
BstEII GGTNACC 2 cut(s) 721, 916
BstF5I GGATG 2 cut(s) 225, 520
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 6 cut(s) 70, 94, 153, 264, 288, 354
BstMAI GTCTC 2 cut(s) 752, 866
BstMBI GATC 6 cut(s) 67, 91, 150, 261, 285, 351
BstMCI CGRYCG 2 cut(s) 153, 288
BstMWI GCNNNNNNNGC 6 cut(s) 152, 276, 379, 574, 661, 832
BstNI CCWGG 2 cut(s) 328, 641
BstPI GGTNACC 2 cut(s) 721, 916
BstSCI CCNGG 5 cut(s) 180, 326, 639, 647, 648
BstSFI CTRYAG 2 cut(s) 200, 885
BstV1I GCAGC 3 cut(s) 186, 291, 321
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 5 cut(s) 126, 499, 577, 618, 795
BtgI CCRYGG 1 cut(s) 665
BtgZI GCGATG 1 cut(s) 463
BtsCI GGATG 2 cut(s) 225, 520
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 2 cut(s) 534, 789
CciI TCATGA 1 cut(s) 297
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 7 cut(s) 125, 324, 406, 497, 524, 575, 793
Cfr9I CCCGGG 1 cut(s) 648
CseI GACGC 3 cut(s) 371, 373, 686
Csp6I GTAC 2 cut(s) 534, 677
CviAII CATG 4 cut(s) 71, 265, 298, 489
CviQI GTAC 2 cut(s) 534, 677
DdeI CTNAG 2 cut(s) 501, 749
DpnI GATC 6 cut(s) 69, 93, 152, 263, 287, 353
DpnII GATC 6 cut(s) 67, 91, 150, 261, 285, 351
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 128, 555
Eco24I GRGCYC 2 cut(s) 148, 182
Eco47I GGWCC 3 cut(s) 324, 406, 524
Eco53kI GAGCTC 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 648
Eco91I GGTNACC 2 cut(s) 721, 916
EcoICRI GAGCTC 1 cut(s) 146
EcoO65I GGTNACC 2 cut(s) 721, 916
EcoRII CCWGG 2 cut(s) 326, 639
EcoT14I CCWWGG 2 cut(s) 128, 555
EcoT38I GRGCYC 2 cut(s) 148, 182
ErhI CCWWGG 2 cut(s) 128, 555
Esp3I CGTCTC 1 cut(s) 752
FaeI CATG 4 cut(s) 74, 268, 301, 492
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 537
FatI CATG 4 cut(s) 70, 264, 297, 488
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 4 cut(s) 200, 280, 335, 545
FokI GGATG 2 cut(s) 232, 527
FriOI GRGCYC 2 cut(s) 148, 182
Fsp4HI GCNGC 4 cut(s) 200, 280, 335, 545
FspBI CTAG 3 cut(s) 108, 626, 776
GlaI GCGC 1 cut(s) 269
GluI GCNGC 4 cut(s) 200, 280, 335, 545
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 5 cut(s) 126, 499, 577, 618, 795
HapII CCGG 5 cut(s) 182, 242, 310, 578, 649
HgaI GACGC 3 cut(s) 371, 373, 686
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 4 cut(s) 74, 268, 301, 492
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 740
HpaII CCGG 5 cut(s) 182, 242, 310, 578, 649
HphI GGTGA 1 cut(s) 574
Hpy188I TCNGA 4 cut(s) 91, 150, 214, 344
Hpy188III TCNNGA 4 cut(s) 76, 298, 322, 776
Hpy99I CGWCG 3 cut(s) 367, 387, 702
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 4 cut(s) 202, 421, 782, 887
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 276, 379, 574, 661, 832
HpyF3I CTNAG 2 cut(s) 501, 749
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 4 cut(s) 74, 268, 301, 492
HspAI GCGC 1 cut(s) 268
KpnI GGTACC 1 cut(s) 680
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 6 cut(s) 67, 91, 150, 261, 285, 351
LmnI GCTCC 4 cut(s) 151, 541, 652, 661
Lsp1109I GCAGC 3 cut(s) 186, 291, 321
LweI GCATC 2 cut(s) 555, 769
MaeI CTAG 3 cut(s) 108, 626, 776
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 4 cut(s) 469, 721, 784, 916
MalI GATC 6 cut(s) 69, 93, 152, 263, 287, 353
MboI GATC 6 cut(s) 67, 91, 150, 261, 285, 351
MboII GAAGA 4 cut(s) 32, 62, 74, 722
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 148, 182
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 1 cut(s) 410
MluNI TGGCCA 1 cut(s) 618
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 3 cut(s) 30, 687, 906
Msp20I TGGCCA 1 cut(s) 618
MspI CCGG 5 cut(s) 182, 242, 310, 578, 649
MspR9I CCNGG 5 cut(s) 182, 328, 641, 649, 650
MvaI CCWGG 2 cut(s) 328, 641
MwoI GCNNNNNNNGC 6 cut(s) 152, 276, 379, 574, 661, 832
NciI CCSGG 3 cut(s) 182, 649, 650
NdeII GATC 6 cut(s) 67, 91, 150, 261, 285, 351
NlaIII CATG 4 cut(s) 74, 268, 301, 492
NlaIV GGNNCC 5 cut(s) 525, 543, 645, 663, 678
NmuCI GTSAC 2 cut(s) 784, 916
PagI TCATGA 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 4 cut(s) 201, 281, 336, 546
Ple19I CGATCG 2 cut(s) 153, 288
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 326, 639
PspEI GGTNACC 2 cut(s) 721, 916
PspGI CCWGG 2 cut(s) 326, 639
PspN4I GGNNCC 5 cut(s) 525, 543, 645, 663, 678
PspPI GGNCC 7 cut(s) 125, 324, 406, 497, 524, 575, 793
PstI CTGCAG 2 cut(s) 204, 889
PsuI RGATCY 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 404
PvuI CGATCG 2 cut(s) 153, 288
RsaI GTAC 2 cut(s) 535, 678
RsaNI GTAC 2 cut(s) 534, 677
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 3 cut(s) 30, 687, 906
SatI GCNGC 4 cut(s) 200, 280, 335, 545
Sau3AI GATC 6 cut(s) 67, 91, 150, 261, 285, 351
Sau96I GGNCC 7 cut(s) 125, 324, 406, 497, 524, 575, 793
ScrFI CCNGG 5 cut(s) 182, 328, 641, 649, 650
SduI GDGCHC 2 cut(s) 148, 182
SfaNI GCATC 2 cut(s) 555, 769
SfcI CTRYAG 2 cut(s) 200, 885
SinI GGWCC 3 cut(s) 324, 406, 524
SmaI CCCGGG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 377, 656
SmoI CTYRAG 2 cut(s) 377, 656
Sse9I AATT 1 cut(s) 410
SsiI CCGC 2 cut(s) 161, 545
SspMI CTAG 3 cut(s) 108, 626, 776
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 5 cut(s) 180, 326, 639, 647, 648
StyI CCWWGG 2 cut(s) 128, 555
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 48, 142
TasI AATT 1 cut(s) 410
TauI GCSGC 1 cut(s) 547
Tru1I TTAA 3 cut(s) 30, 687, 906
Tru9I TTAA 3 cut(s) 30, 687, 906
TscAI CASTG 2 cut(s) 534, 789
TseFI GTSAC 2 cut(s) 784, 916
TseI GCWGC 3 cut(s) 199, 279, 334
Tsp45I GTSAC 2 cut(s) 784, 916
TspDTI ATGAA 3 cut(s) 270, 286, 314
TspMI CCCGGG 1 cut(s) 648
TspRI CASTG 2 cut(s) 534, 789
Tth111I GACNNNGTC 1 cut(s) 404
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 3 cut(s) 324, 406, 524
XbaI TCTAGA 1 cut(s) 775
XmaI CCCGGG 1 cut(s) 648
XspI CTAG 3 cut(s) 108, 626, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.