Rmu_sc0007192.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007192.1
OG0000308
Physical Location & Seq
Forward (+)
7041 .. 7898
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007192.1_g000002.1.cds

Sequence Viewer

Length: 756 bp
atggcaattgatgcaatggcagcccgcttggcctcctccctagagctggctgatggcaagcaaccggtggatttgcgtccatcaaaaggattgagacaacctgaagcattcatggtaggaaagctactcacggcacgggaatattctcgtcgatctttccttggcctgtttcgatctgcatggagaatcaatggcagattgaatgttgaagaactcggagaagatgatagggtctttccggcaagggagatcccactgaagaaatcatcatattggatgacactacaaggagtgccaccggccttcatatccgaatggattatgcgactgattgagagtaccctaggcgagttcatggaagttgatcgccccgcctttcggacgcgagttttgcgcattagggtcgagatcgattatgtcaaacctctcctgtttcgtcgacgtttcagggtggaagatgaagtccagttcatggtgcagtttcgatatgacaaattgtttggtaggtgtggcacctgcggcctagttaaccatgttggcctcccttgttcagggccggatctggaagaagaccgtgacatacctgttggcacggtggagcaacccatggctttagccgtattactgggactggaaaaccctaatgtcaatagggtaacggtaaacaaccaaactctgattttcaaggctcaaatccctaatagtatacccgaagctatcttacctccagctgtgctggccatgcgtcgacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

251

Amino Acids

28.61

Weight (kDa)

9.09

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 524
Acc16I TGCGCA 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 472
AccI GTMKAC 3 cut(s) 439, 706, 748
AccII CGCG 1 cut(s) 385
AciI CCGC 3 cut(s) 25, 372, 519
AclWI GGATC 2 cut(s) 244, 567
AcoI YGGCCR 1 cut(s) 738
AcuI CTGAAG 2 cut(s) 123, 278
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 5 cut(s) 46, 86, 378, 472, 551
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 3 cut(s) 202, 209, 685
AluBI AGCT 4 cut(s) 46, 124, 716, 731
AluI AGCT 4 cut(s) 46, 124, 716, 731
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 2 cut(s) 244, 567
AoxI GGCC 7 cut(s) 30, 163, 300, 520, 538, 554, 738
ApeKI GCWGC 1 cut(s) 20
ArsI GACNNNNNNTTYG 4 cut(s) 373, 405, 482, 514
AsiGI ACCGGT 1 cut(s) 64
AspA2I CCTAGG 1 cut(s) 343
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 554
AvrII CCTAGG 1 cut(s) 343
BalI TGGCCA 1 cut(s) 740
BanI GGYRCC 1 cut(s) 512
BarI GAAGNNNNNNTAC 2 cut(s) 705, 737
BbsI GAAGAC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 47, 88
BceAI ACGGC 2 cut(s) 147, 602
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 3 cut(s) 41, 344, 524
BfuAI ACCTGC 1 cut(s) 524
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 2 cut(s) 21, 520
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 2 cut(s) 22, 521
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 1 cut(s) 514
BmrI ACTGGG 1 cut(s) 635
BmuI ACTGGG 1 cut(s) 635
BpiI GAAGAC 1 cut(s) 576
BpmI CTGGAG 1 cut(s) 711
Bsa29I ATCGAT 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 160, 343, 606
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 86, 378, 472, 551
Bse118I RCCGGY 2 cut(s) 64, 298
Bse1I ACTGG 3 cut(s) 466, 630, 636
Bse3DI GCAATG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 160, 343, 606
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 5 cut(s) 46, 86, 378, 472, 551
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 3 cut(s) 466, 630, 636
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 7 cut(s) 32, 165, 302, 522, 540, 556, 740
BshNI GGYRCC 1 cut(s) 512
BshTI ACCGGT 1 cut(s) 64
BshVI ATCGAT 1 cut(s) 411
BsiSI CCGG 4 cut(s) 65, 239, 299, 557
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 5 cut(s) 46, 86, 378, 472, 551
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 642
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 7 cut(s) 32, 165, 302, 522, 540, 556, 740
Bsp143I GATC 6 cut(s) 152, 173, 249, 364, 408, 559
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 3 cut(s) 25, 372, 519
BspANI GGCC 7 cut(s) 32, 165, 302, 522, 540, 556, 740
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 2 cut(s) 244, 567
BspT107I GGYRCC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 64, 298
BsrI ACTGG 3 cut(s) 466, 630, 636
BssAI RCCGGY 2 cut(s) 64, 298
BssECI CCNNGG 3 cut(s) 160, 343, 606
BssMI GATC 6 cut(s) 152, 173, 249, 364, 408, 559
BssNAI GTATAC 1 cut(s) 707
BssT1I CCWWGG 3 cut(s) 160, 343, 606
Bst1107I GTATAC 1 cut(s) 707
Bst4CI ACNGT 3 cut(s) 575, 595, 661
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 25, 48, 59, 738
BstDSI CCRYGG 1 cut(s) 606
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 6 cut(s) 155, 176, 252, 367, 411, 562
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 6 cut(s) 152, 173, 249, 364, 408, 559
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 29, 391, 519, 737, 742
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 2 cut(s) 249, 559
BstYI RGATCY 2 cut(s) 249, 559
BstZ17I GTATAC 1 cut(s) 707
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 7 cut(s) 32, 165, 302, 522, 540, 556, 740
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 254
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 4 cut(s) 25, 48, 59, 738
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 2 cut(s) 64, 298
Cfr13I GGNCC 1 cut(s) 554
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 3 cut(s) 65, 391, 734
Csp6I GTAC 1 cut(s) 339
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 7 cut(s) 112, 180, 355, 472, 533, 607, 742
CviQI GTAC 1 cut(s) 339
DpnI GATC 6 cut(s) 154, 175, 251, 366, 410, 561
DpnII GATC 6 cut(s) 152, 173, 249, 364, 408, 559
EaeI YGGCCR 1 cut(s) 738
Eco130I CCWWGG 3 cut(s) 160, 343, 606
Eco57I CTGAAG 2 cut(s) 123, 278
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoT14I CCWWGG 3 cut(s) 160, 343, 606
ErhI CCWWGG 3 cut(s) 160, 343, 606
FaeI CATG 7 cut(s) 115, 183, 358, 475, 536, 610, 745
FaqI GGGAC 1 cut(s) 642
FatI CATG 7 cut(s) 111, 179, 354, 471, 532, 606, 741
FauI CCCGC 2 cut(s) 32, 379
FblI GTMKAC 3 cut(s) 439, 706, 748
Fnu4HI GCNGC 2 cut(s) 21, 520
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 21, 520
FspBI CTAG 3 cut(s) 41, 344, 524
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 1 cut(s) 395
GluI GCNGC 2 cut(s) 21, 520
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 7 cut(s) 32, 165, 302, 522, 540, 556, 740
HapII CCGG 4 cut(s) 65, 239, 299, 557
HgaI GACGC 3 cut(s) 65, 391, 734
HhaI GCGC 1 cut(s) 396
Hin1II CATG 7 cut(s) 115, 183, 358, 475, 536, 610, 745
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 3 cut(s) 440, 529, 749
HindII GTYRAC 3 cut(s) 440, 529, 749
HinfI GANTC 1 cut(s) 186
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 4 cut(s) 65, 239, 299, 557
Hpy166II GTNNAC 5 cut(s) 440, 529, 664, 707, 749
Hpy188I TCNGA 4 cut(s) 218, 313, 381, 678
Hpy188III TCNNGA 2 cut(s) 406, 563
Hpy8I GTNNAC 5 cut(s) 440, 529, 664, 707, 749
Hpy99I CGWCG 4 cut(s) 153, 441, 444, 750
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 3 cut(s) 575, 595, 661
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 3 cut(s) 14, 179, 478
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 29, 391, 519, 737, 742
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 7 cut(s) 115, 183, 358, 475, 536, 610, 745
HspAI GCGC 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 6 cut(s) 152, 173, 249, 364, 408, 559
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 3 cut(s) 41, 344, 524
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 2 cut(s) 575, 655
MalI GATC 6 cut(s) 154, 175, 251, 366, 410, 561
MboI GATC 6 cut(s) 152, 173, 249, 364, 408, 559
MboII GAAGA 6 cut(s) 221, 233, 271, 467, 578, 581
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 249, 559
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 2 cut(s) 6, 494
MluNI TGGCCA 1 cut(s) 740
MnlI CCTC 5 cut(s) 43, 46, 435, 551, 735
Mox20I TGGCCA 1 cut(s) 740
MscI TGGCCA 1 cut(s) 740
MseI TTAA 1 cut(s) 528
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 4 cut(s) 65, 239, 299, 557
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 107
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 29, 391, 519, 737, 742
NcoI CCATGG 1 cut(s) 606
NdeII GATC 6 cut(s) 152, 173, 249, 364, 408, 559
NlaIII CATG 7 cut(s) 115, 183, 358, 475, 536, 610, 745
NlaIV GGNNCC 1 cut(s) 514
NmuCI GTSAC 1 cut(s) 575
NsbI TGCGCA 1 cut(s) 395
PaqCI CACCTGC 1 cut(s) 524
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 2 cut(s) 22, 521
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 1 cut(s) 554
PsuI RGATCY 2 cut(s) 249, 559
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SalI GTCGAC 2 cut(s) 438, 747
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 2 cut(s) 21, 520
Sau3AI GATC 6 cut(s) 152, 173, 249, 364, 408, 559
Sau96I GGNCC 1 cut(s) 554
SgrDI CGTCGACG 1 cut(s) 438
Sse9I AATT 2 cut(s) 6, 494
SsiI CCGC 3 cut(s) 25, 372, 519
SspI AATATT 1 cut(s) 143
SspMI CTAG 3 cut(s) 41, 344, 524
StyI CCWWGG 3 cut(s) 160, 343, 606
TaaI ACNGT 3 cut(s) 575, 595, 661
TaiI ACGT 1 cut(s) 445
TaqI TCGA 7 cut(s) 151, 172, 405, 411, 439, 484, 748
TasI AATT 2 cut(s) 6, 494
TauI GCSGC 1 cut(s) 522
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 5 cut(s) 100, 295, 343, 460, 474
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 472
XagI CCTNNNNNAGG 1 cut(s) 549
XmaJI CCTAGG 1 cut(s) 343
XmiI GTMKAC 3 cut(s) 439, 706, 748
XspI CTAG 3 cut(s) 41, 344, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.