FvH4_1g04521

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000111
Physical Location & Seq
Reverse (-)
2399887 .. 2401191
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04521.t1

Sequence Viewer

Length: 867 bp
ATGGAAGGCCGTGTCAACTTGCCACCGAAGATCATGCTTGACATTATTTCAAGGCTGCCAGTGAAGCACGTGTGCCAGTGCAAGTGTTTATCAAGGGCATGGCGGTCCATACCCTCCGATCCTGATTTCGTTGCAAAGTACAATAAGGATGTGTTCTTCCAAGGAAGGCGCCTCCTCTTTACTGTTCTTTATGACCACTGGAGACCAGAGATATACTCTTTGAATCTCGAGCAGTTTCTCAATGAGAATCAAAATGTTGATGTTGGTGGTTTAGCAGCACCCCTCCGCTTTGTGTTCAATCATCTTCCAAACCATGCACTTGATTGGTTTCCCTTTGTTCATTATTCCTGCTATGCCTTGTTCTTGTCCCAGTCATATTCTGGTTACAGTTTGATCAACCCTGTAACCAAGGAATCAAATAAACTACCAGAGGCACCAATATGGAGACGACCAATGAAGCCCTTTTCTCGGCACACATATGGAGTTGGATTTGATCACTCCACCAATGAATACAAGGTGATTAACGGGCAGGATTATGGTGATGGAATTGTGTTTAGTGTCTATACGTTGCAGACTGATTCTTGGCGACAGATTGACGGCTTGTTTCCCTACAAAGCTCTCGGTTATGATGGAATCGTGGTGAATGGAGCTGTTCATTGGTTGGTGAGGAAGGTTGCAGATCGATCATTAGTGATTATATCTTTCATTTTAGCAAGGGAGGAGTTCAGTGAAATTCCAGTACCACCCATTCCAAGTACTCTTTCAATTAAACTAGGGGCATTTAGAGATTGGCTGTGTATAACATTAGTATCAAAACAGACTAAAACCTCAGCGAAGAAAACACGGACAGCATATAATGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

289

Amino Acids

33.17

Weight (kDa)

9.08

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 43 3e-08 F-box domain
F-box-like PF12937 6 - 41 1.3e-06 F-box-like
FBA_1 PF07734 117 - 262 6e-13 F-box associated beta propeller domain
FBA_3 PF08268 120 - 249 1.2e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 168, 433
AciI CCGC 2 cut(s) 103, 286
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 732
AcvI CACGTG 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 169
AfaI GTAC 3 cut(s) 140, 741, 757
AfiI CCNNNNNNNGG 1 cut(s) 468
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 4 cut(s) 51, 223, 298, 765
AjuI GAANNNNNNNTTGG 2 cut(s) 745, 777
AluBI AGCT 2 cut(s) 617, 650
AluI AGCT 2 cut(s) 617, 650
Alw26I GTCTC 2 cut(s) 196, 439
AlwI GGATC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 2 cut(s) 55, 275
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 4 cut(s) 529, 551, 652, 676
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 105
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BanI GGYRCC 2 cut(s) 168, 433
BbrPI CACGTG 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 829
BbvI GCAGC 2 cut(s) 42, 287
BccI CCATC 2 cut(s) 536, 623
BceAI ACGGC 1 cut(s) 613
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BclI TGATCA 2 cut(s) 393, 493
BcoDI GTCTC 2 cut(s) 196, 439
BfaI CTAG 1 cut(s) 773
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 2 cut(s) 56, 276
BlsI GCNGC 2 cut(s) 57, 277
BmcAI AGTACT 1 cut(s) 757
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 170, 435
BmrI ACTGGG 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 829
Bsa29I ATCGAT 1 cut(s) 682
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 160, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse1I ACTGG 5 cut(s) 59, 76, 203, 370, 737
BseCI ATCGAT 1 cut(s) 682
BseDI CCNNGG 2 cut(s) 160, 408
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 843
BseNI ACTGG 5 cut(s) 59, 76, 203, 370, 737
BseRI GAGGAG 2 cut(s) 164, 734
BseXI GCAGC 2 cut(s) 42, 287
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 2 cut(s) 168, 433
BshVI ATCGAT 1 cut(s) 682
BsiHKCI CYCGRG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 2 cut(s) 196, 439
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 227
Bsp143I GATC 6 cut(s) 30, 118, 393, 493, 679, 683
BspACI CCGC 2 cut(s) 103, 286
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 842
BspDI ATCGAT 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 170, 435
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 2 cut(s) 168, 433
BspTNI GGTCTC 1 cut(s) 196
BsrI ACTGG 5 cut(s) 59, 76, 203, 370, 737
BssECI CCNNGG 2 cut(s) 160, 408
BssMI GATC 6 cut(s) 30, 118, 393, 493, 679, 683
BssNI GRCGYC 1 cut(s) 169
BssT1I CCWWGG 2 cut(s) 160, 408
Bst4CI ACNGT 2 cut(s) 184, 389
BstACI GRCGYC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 829
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 6 cut(s) 33, 121, 396, 496, 682, 686
BstMAI GTCTC 2 cut(s) 196, 439
BstMBI GATC 6 cut(s) 30, 118, 393, 493, 679, 683
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 42, 287
Bsu15I ATCGAT 1 cut(s) 682
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 682
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 4 cut(s) 66, 83, 196, 733
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 105
ClaI ATCGAT 1 cut(s) 682
Csp6I GTAC 3 cut(s) 139, 740, 756
CviAII CATG 3 cut(s) 34, 99, 314
CviJI RGCY 7 cut(s) 9, 55, 460, 600, 617, 650, 793
CviKI_1 RGCY 7 cut(s) 9, 55, 460, 600, 617, 650, 793
CviQI GTAC 3 cut(s) 139, 740, 756
DdeI CTNAG 1 cut(s) 829
DinI GGCGCC 1 cut(s) 170
DpnI GATC 6 cut(s) 32, 120, 395, 495, 681, 685
DpnII GATC 6 cut(s) 30, 118, 393, 493, 679, 683
Eco130I CCWWGG 2 cut(s) 160, 408
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 105
Eco72I CACGTG 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 160, 408
EgeI GGCGCC 1 cut(s) 170
EheI GGCGCC 1 cut(s) 170
ErhI CCWWGG 2 cut(s) 160, 408
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 3 cut(s) 37, 102, 317
FaqI GGGAC 1 cut(s) 352
FatI CATG 3 cut(s) 33, 98, 313
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 2 cut(s) 393, 493
Fnu4HI GCNGC 2 cut(s) 56, 276
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 56, 276
FspBI CTAG 1 cut(s) 773
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 56, 276
GsuI CTGGAG 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 9
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 3 cut(s) 37, 102, 317
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 5 cut(s) 223, 247, 413, 578, 633
HphI GGTGA 4 cut(s) 529, 551, 652, 676
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 122, 227
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 159, 664
HpyCH4III ACNGT 2 cut(s) 184, 389
HpyCH4IV ACGT 2 cut(s) 69, 566
HpyCH4V TGCA 5 cut(s) 81, 134, 317, 571, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 829
HpySE526I ACGT 2 cut(s) 69, 566
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 3 cut(s) 37, 102, 317
HspAI GCGC 1 cut(s) 169
KasI GGCGCC 1 cut(s) 168
Ksp22I TGATCA 2 cut(s) 393, 493
Kzo9I GATC 6 cut(s) 30, 118, 393, 493, 679, 683
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 2 cut(s) 42, 287
MaeI CTAG 1 cut(s) 773
MaeII ACGT 2 cut(s) 69, 566
MaeIII GTNAC 2 cut(s) 383, 403
MalI GATC 6 cut(s) 32, 120, 395, 495, 681, 685
MboI GATC 6 cut(s) 30, 118, 393, 493, 679, 683
MboII GAAGA 4 cut(s) 40, 148, 296, 847
MluCI AATT 3 cut(s) 546, 732, 765
Mly113I GGCGCC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 466
MnlI CCTC 8 cut(s) 124, 182, 185, 293, 424, 660, 712, 838
MseI TTAA 2 cut(s) 522, 768
MslI CAYNNNNRTG 2 cut(s) 439, 477
MwoI GCNNNNNNNGC 1 cut(s) 64
NarI GGCGCC 1 cut(s) 169
NdeI CATATG 1 cut(s) 478
NdeII GATC 6 cut(s) 30, 118, 393, 493, 679, 683
NlaIII CATG 3 cut(s) 37, 102, 317
NlaIV GGNNCC 2 cut(s) 170, 435
NmeAIII GCCGAG 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 227
PfeI GAWTC 5 cut(s) 223, 247, 413, 578, 633
PkrI GCNGC 2 cut(s) 57, 277
PluTI GGCGCC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 70
PspCI CACGTG 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 170, 435
PspPI GGNCC 1 cut(s) 105
RsaI GTAC 3 cut(s) 140, 741, 757
RsaNI GTAC 3 cut(s) 139, 740, 756
RseI CAYNNNNRTG 2 cut(s) 439, 477
SaqAI TTAA 2 cut(s) 522, 768
SatI GCNGC 2 cut(s) 56, 276
Sau3AI GATC 6 cut(s) 30, 118, 393, 493, 679, 683
Sau96I GGNCC 1 cut(s) 105
ScaI AGTACT 1 cut(s) 757
SetI ASST 7 cut(s) 72, 519, 569, 619, 652, 675, 830
SfoI GGCGCC 1 cut(s) 170
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 439, 477
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 546, 732, 765
SsiI CCGC 2 cut(s) 103, 286
SspDI GGCGCC 1 cut(s) 168
SspMI CTAG 1 cut(s) 773
StyI CCWWGG 2 cut(s) 160, 408
TaaI ACNGT 2 cut(s) 184, 389
TaiI ACGT 2 cut(s) 72, 569
TaqI TCGA 2 cut(s) 228, 682
TasI AATT 3 cut(s) 546, 732, 765
TatI WGTACW 2 cut(s) 138, 755
TfiI GAWTC 5 cut(s) 223, 247, 413, 578, 633
Tru1I TTAA 2 cut(s) 522, 768
Tru9I TTAA 2 cut(s) 522, 768
TscAI CASTG 4 cut(s) 66, 83, 203, 733
TseI GCWGC 2 cut(s) 55, 275
TspDTI ATGAA 5 cut(s) 329, 470, 522, 644, 694
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 4 cut(s) 66, 83, 203, 733
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 732
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 1 cut(s) 773
ZrmI AGTACT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.