Rmu_sc0003396.1_g000011

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003396.1
OG0000111
Physical Location & Seq
Reverse (-)
43578 .. 44669
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003396.1_g000011.1.cds

Sequence Viewer

Length: 1092 bp
atgcatttcaacaaagccattgagaatgaggatttgttttatcgaagaagaaaactgttattcactgataaacaaggtgattcactttactctttcgacctcgatgagtttcttgagcattatcatgatcatccatttctgaatggtcttggtaacagtaacaatgttaatgttggcgttattggtgatgattatgatggtgatctagttgtcactagactcaaactacccgattgtggtggggcctctagatatcctcgtgagagttggaccttggtgactttctgctgtggcctagtgttatttaggttggattcggacttaactgataaacaaggtgattcactttactctttcgacctcgatgagtttcttgagcattatcatgatcatccatttctgaatggccttggtaacagtaacaatgttaatgttggtgttattggtgatgattatgatggtgatctagttgtcactagactcaaactacccgattgtggtggggccgctagatatcctcgtgagagttggaccttggtgactttctgctgtggcctagtgttatttaggttggattcggacttatatgtggctaacccagcattgaggaaatataagaaactgccagctccatctgcagagttgggttcgaagttatatgtggctaacccaaggaaatataataaactgtcaggtcctggaggcttcttctgttaccgattcgggttcggttttgatcactccactgatgatttcaaagtgattagatcgaggacctcgaaatatggagtcgattttattgtccatgcattcaaaactggttcttggcgacgaattcaaaggcgatttccctacataaattttcgtcctcggactgggataatgcttaatggaggacttcattggttgatgaggagactgaaaggtgactcatgggtgattgtatctctctctttagcagaagaggaggttcgggaaattccactgccgcttggtttagatgtgggaatcttcgatttcatggaattgggactgttctacacagacagcctctgtatagctcattcatttattacttttttccctacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

363

Amino Acids

41.5

Weight (kDa)

6.0

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 507, 989
AcsI RAATTY 3 cut(s) 834, 859, 978
AfiI CCNNNNNNNGG 3 cut(s) 236, 497, 875
AgsI TTSAA 4 cut(s) 10, 757, 814, 839
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 2 cut(s) 629, 1061
AluI AGCT 2 cut(s) 629, 1061
Alw26I GTCTC 1 cut(s) 910
AlwNI CAGNNNCTG 2 cut(s) 698, 1053
AoxI GGCC 5 cut(s) 243, 292, 406, 504, 553
ApoI RAATTY 3 cut(s) 834, 859, 978
AspS9I GGNCC 6 cut(s) 243, 270, 504, 531, 695, 774
AsuII TTCGAA 1 cut(s) 650
AvaII GGWCC 4 cut(s) 270, 531, 695, 774
BauI CACGAG 2 cut(s) 258, 519
BccI CCATC 3 cut(s) 191, 452, 640
BciT130I CCWGG 1 cut(s) 699
BclI TGATCA 3 cut(s) 127, 388, 736
BcoDI GTCTC 1 cut(s) 910
BfaI CTAG 8 cut(s) 206, 216, 249, 296, 467, 477, 510, 557
BfmI CTRYAG 1 cut(s) 636
BisI GCNGC 2 cut(s) 507, 989
BlsI GCNGC 2 cut(s) 508, 990
Bme1390I CCNGG 1 cut(s) 699
Bme18I GGWCC 4 cut(s) 270, 531, 695, 774
BmgT120I GGNCC 6 cut(s) 243, 270, 504, 531, 695, 774
BmiI GGNNCC 2 cut(s) 244, 505
BmrFI CCNGG 1 cut(s) 699
BmrI ACTGGG 1 cut(s) 885
BmuI ACTGGG 1 cut(s) 885
BpmI CTGGAG 1 cut(s) 720
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 2 cut(s) 134, 395
BsaBI GATNNNNATC 2 cut(s) 201, 462
BsaJI CCNNGG 5 cut(s) 273, 409, 534, 671, 869
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 497, 875
Bse1I ACTGG 2 cut(s) 823, 880
Bse8I GATNNNNATC 2 cut(s) 201, 462
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 5 cut(s) 273, 409, 534, 671, 869
BseGI GGATG 2 cut(s) 130, 391
BseJI GATNNNNATC 2 cut(s) 201, 462
BseLI CCNNNNNNNGG 3 cut(s) 236, 497, 875
BseNI ACTGG 2 cut(s) 823, 880
BseRI GAGGAG 2 cut(s) 928, 980
BseYI CCCAGC 1 cut(s) 598
BshFI GGCC 5 cut(s) 245, 294, 408, 506, 555
BslFI GGGAC 1 cut(s) 1044
BslI CCNNNNNNNGG 3 cut(s) 236, 497, 875
BsmAI GTCTC 1 cut(s) 910
BsmFI GGGAC 1 cut(s) 1044
BsmI GAATGC 1 cut(s) 809
BsnI GGCC 5 cut(s) 245, 294, 408, 506, 555
Bsp119I TTCGAA 1 cut(s) 650
Bsp143I GATC 6 cut(s) 127, 202, 388, 463, 736, 767
BspACI CCGC 2 cut(s) 507, 989
BspANI GGCC 5 cut(s) 245, 294, 408, 506, 555
BspHI TCATGA 2 cut(s) 124, 385
BspLI GGNNCC 2 cut(s) 244, 505
BspMAI CTGCAG 1 cut(s) 640
BspT104I TTCGAA 1 cut(s) 650
BsrI ACTGG 2 cut(s) 823, 880
BssECI CCNNGG 5 cut(s) 273, 409, 534, 671, 869
BssMI GATC 6 cut(s) 127, 202, 388, 463, 736, 767
BssSI CACGAG 2 cut(s) 258, 519
BssT1I CCWWGG 4 cut(s) 273, 409, 534, 671
Bst2BI CACGAG 2 cut(s) 258, 519
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 5 cut(s) 57, 158, 419, 690, 1035
Bst6I CTCTTC 1 cut(s) 957
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 1 cut(s) 627
BstF5I GGATG 2 cut(s) 130, 391
BstKTI GATC 6 cut(s) 130, 205, 391, 466, 739, 770
BstMAI GTCTC 1 cut(s) 910
BstMBI GATC 6 cut(s) 127, 202, 388, 463, 736, 767
BstMWI GCNNNNNNNGC 2 cut(s) 599, 635
BstNI CCWGG 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 1 cut(s) 636
BsuRI GGCC 5 cut(s) 245, 294, 408, 506, 555
BtsCI GGATG 2 cut(s) 130, 391
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 3 cut(s) 63, 744, 983
Cac8I GCNNGC 1 cut(s) 627
CaiI CAGNNNCTG 2 cut(s) 698, 1053
CciI TCATGA 2 cut(s) 124, 385
Cfr13I GGNCC 6 cut(s) 243, 270, 504, 531, 695, 774
CviAII CATG 5 cut(s) 125, 386, 806, 933, 1021
DpnI GATC 6 cut(s) 129, 204, 390, 465, 738, 769
DpnII GATC 6 cut(s) 127, 202, 388, 463, 736, 767
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
Eco130I CCWWGG 4 cut(s) 273, 409, 534, 671
Eco32I GATATC 2 cut(s) 254, 515
Eco47I GGWCC 4 cut(s) 270, 531, 695, 774
EcoO109I RGGNCCY 3 cut(s) 243, 695, 774
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 2 cut(s) 254, 515
EcoT14I CCWWGG 4 cut(s) 273, 409, 534, 671
EcoT22I ATGCAT 2 cut(s) 6, 811
ErhI CCWWGG 4 cut(s) 273, 409, 534, 671
FaeI CATG 5 cut(s) 128, 389, 809, 936, 1024
FaqI GGGAC 1 cut(s) 1044
FatI CATG 5 cut(s) 124, 385, 805, 932, 1020
FbaI TGATCA 3 cut(s) 127, 388, 736
Fnu4HI GCNGC 2 cut(s) 507, 989
FokI GGATG 2 cut(s) 117, 378
Fsp4HI GCNGC 2 cut(s) 507, 989
FspBI CTAG 8 cut(s) 206, 216, 249, 296, 467, 477, 510, 557
GluI GCNGC 2 cut(s) 507, 989
GsaI CCCAGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 720
HaeIII GGCC 5 cut(s) 245, 294, 408, 506, 555
Hin1II CATG 5 cut(s) 128, 389, 809, 936, 1024
Hpy188I TCNGA 5 cut(s) 141, 319, 402, 580, 873
Hpy188III TCNNGA 8 cut(s) 113, 125, 249, 260, 374, 386, 521, 974
Hpy99I CGWCG 1 cut(s) 834
HpyCH4III ACNGT 5 cut(s) 57, 158, 419, 690, 1035
HpyCH4V TGCA 3 cut(s) 4, 638, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 599, 635
Hsp92II CATG 5 cut(s) 128, 389, 809, 936, 1024
Ksp22I TGATCA 3 cut(s) 127, 388, 736
Kzo9I GATC 6 cut(s) 127, 202, 388, 463, 736, 767
LmnI GCTCC 1 cut(s) 634
LpnPI CCDG 7 cut(s) 612, 639, 678, 684, 711, 804, 861
MaeI CTAG 8 cut(s) 206, 216, 249, 296, 467, 477, 510, 557
MalI GATC 6 cut(s) 129, 204, 390, 465, 738, 769
MboI GATC 6 cut(s) 127, 202, 388, 463, 736, 767
MboII GAAGA 5 cut(s) 57, 60, 700, 974, 1003
MluCI AATT 4 cut(s) 834, 859, 978, 1025
MlyI GAGTC 4 cut(s) 213, 474, 798, 923
MmeI TCCRAC 4 cut(s) 248, 291, 509, 552
Mph1103I ATGCAT 2 cut(s) 6, 811
MseI TTAA 4 cut(s) 168, 323, 429, 888
MslI CAYNNNNRTG 2 cut(s) 123, 384
MspR9I CCNGG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 809
MvaI CCWGG 1 cut(s) 699
MwoI GCNNNNNNNGC 2 cut(s) 599, 635
NdeII GATC 6 cut(s) 127, 202, 388, 463, 736, 767
NlaIII CATG 5 cut(s) 128, 389, 809, 936, 1024
NlaIV GGNNCC 2 cut(s) 244, 505
NmuCI GTSAC 5 cut(s) 211, 277, 472, 538, 926
NsiI ATGCAT 2 cut(s) 6, 811
NspV TTCGAA 1 cut(s) 650
PagI TCATGA 2 cut(s) 124, 385
PcsI WCGNNNNNNNCGW 1 cut(s) 776
PctI GAATGC 1 cut(s) 809
PfeI GAWTC 6 cut(s) 80, 314, 341, 575, 720, 1008
PfoI TCCNGGA 1 cut(s) 697
PkrI GCNGC 2 cut(s) 508, 990
PleI GAGTC 4 cut(s) 213, 474, 797, 923
PpsI GAGTC 4 cut(s) 213, 474, 797, 923
PpuMI RGGWCCY 2 cut(s) 695, 774
Psp5II RGGWCCY 2 cut(s) 695, 774
Psp6I CCWGG 1 cut(s) 697
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 2 cut(s) 244, 505
PspPI GGNCC 6 cut(s) 243, 270, 504, 531, 695, 774
PspPPI RGGWCCY 2 cut(s) 695, 774
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 2 cut(s) 698, 1053
RseI CAYNNNNRTG 2 cut(s) 123, 384
SaqAI TTAA 4 cut(s) 168, 323, 429, 888
SatI GCNGC 2 cut(s) 507, 989
Sau3AI GATC 6 cut(s) 127, 202, 388, 463, 736, 767
Sau96I GGNCC 6 cut(s) 243, 270, 504, 531, 695, 774
SchI GAGTC 4 cut(s) 213, 474, 798, 923
ScrFI CCNGG 1 cut(s) 699
SfcI CTRYAG 1 cut(s) 636
SfuI TTCGAA 1 cut(s) 650
SinI GGWCC 4 cut(s) 270, 531, 695, 774
SmiMI CAYNNNNRTG 2 cut(s) 123, 384
SmlI CTYRAG 2 cut(s) 113, 374
SmoI CTYRAG 2 cut(s) 113, 374
Sse9I AATT 4 cut(s) 834, 859, 978, 1025
SsiI CCGC 2 cut(s) 507, 989
SspMI CTAG 8 cut(s) 206, 216, 249, 296, 467, 477, 510, 557
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 4 cut(s) 273, 409, 534, 671
TaaI ACNGT 5 cut(s) 57, 158, 419, 690, 1035
TasI AATT 4 cut(s) 834, 859, 978, 1025
TauI GCSGC 2 cut(s) 509, 991
TfiI GAWTC 6 cut(s) 80, 314, 341, 575, 720, 1008
Tru1I TTAA 4 cut(s) 168, 323, 429, 888
Tru9I TTAA 4 cut(s) 168, 323, 429, 888
TscAI CASTG 3 cut(s) 70, 751, 990
TseFI GTSAC 5 cut(s) 211, 277, 472, 538, 926
Tsp45I GTSAC 5 cut(s) 211, 277, 472, 538, 926
TspDTI ATGAA 3 cut(s) 890, 1009, 1056
TspRI CASTG 3 cut(s) 70, 751, 990
VpaK11BI GGWCC 4 cut(s) 270, 531, 695, 774
XapI RAATTY 3 cut(s) 834, 859, 978
XbaI TCTAGA 1 cut(s) 248
XspI CTAG 8 cut(s) 206, 216, 249, 296, 467, 477, 510, 557
Zsp2I ATGCAT 2 cut(s) 6, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.