FvH4_1g05182

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000111
Physical Location & Seq
Reverse (-)
2773557 .. 2775029
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05182.t1

Sequence Viewer

Length: 486 bp
ATGGAAGATGGTCATAAAGAAAAGATGGAAAACGATGGCCAAAACGTGGACCTTCCACCTGAGATGATGCATGAAATTGTGTCAAGGCTACCAGTGAAGCCCTTGTGTCGCTTCAAGCTTGTATCCAAGTCATGGGAGTCCCTAATCTCCGATCCTGATTTCGTCGCAAACTATTCCAAAGCCGCCTTTGAGAATGAGGATGTCTTCTTCAGAAGACGACGTCTCCTCTTTACTTTCGTTGACTCTGGACAACGAGGGATGTACTCTTTGGATCTTGACCGGTTTCTCAATGAGAATCCTAATGTTGGTGTTGACGGTTCAGTAGCAGCACCCATTGAGCTCGACTTTGTTTACAGTCATCTTCCGAGAGGTGGATATGATTGGAGTATCAACGAAGATACTTTTAAAGACTTTTCAGGTCCAGAAACTAATCCGTGCCAGAGAATCTTGTCAGAACGCTTCCTCCCCTCTTATTACCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

162

Amino Acids

18.68

Weight (kDa)

4.78

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 54 3.5e-11 F-box domain
F-box-like PF12937 17 - 53 2.4e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 223
AccB7I CCANNNNNTGG 2 cut(s) 46, 132
AciI CCGC 1 cut(s) 183
AclWI GGATC 2 cut(s) 146, 279
AcoI YGGCCR 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 220
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 4 cut(s) 46, 132, 305, 371
AgeI ACCGGT 1 cut(s) 279
AgsI TTSAA 1 cut(s) 115
AloI GAACNNNNNNTCC 2 cut(s) 447, 479
AluBI AGCT 2 cut(s) 118, 340
AluI AGCT 2 cut(s) 118, 340
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 146, 279
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 326
AsiGI ACCGGT 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 49, 419
AvaII GGWCC 2 cut(s) 49, 419
BalI TGGCCA 1 cut(s) 39
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 196, 220
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 338
BccI CCATC 3 cut(s) 2, 19, 29
BciVI GTATCC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 227
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 2 cut(s) 183, 327
BlsI GCNGC 2 cut(s) 184, 328
Bme18I GGWCC 2 cut(s) 49, 419
BmgT120I GGNCC 2 cut(s) 49, 419
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 196, 220
BsaHI GRCGYC 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 279
BsaXI ACNNNNNCTCC 4 cut(s) 207, 237, 447, 477
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 132, 305, 371
Bse118I RCCGGY 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 205, 264
BseLI CCNNNNNNNGG 4 cut(s) 46, 132, 305, 371
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 338
BshFI GGCC 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 4 cut(s) 46, 132, 305, 371
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 151, 271
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 2 cut(s) 146, 279
BsrFI RCCGGY 1 cut(s) 279
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 279
BssMI GATC 2 cut(s) 151, 271
BssNI GRCGYC 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 317, 356
BstACI GRCGYC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 205, 264
BstKTI GATC 2 cut(s) 154, 274
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 151, 271
BstV1I GCAGC 1 cut(s) 338
BstV2I GAAGAC 2 cut(s) 196, 220
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 205, 264
BtsIMutI CAGTG 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 49, 419
Csp6I GTAC 1 cut(s) 262
CspAI ACCGGT 1 cut(s) 279
CviAII CATG 2 cut(s) 71, 132
CviJI RGCY 6 cut(s) 39, 88, 100, 118, 182, 340
CviKI_1 RGCY 6 cut(s) 39, 88, 100, 118, 182, 340
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 153, 273
DpnII GATC 2 cut(s) 151, 271
DraI TTTAAA 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 49, 419
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 2 cut(s) 74, 135
FaiI YATR 4 cut(s) 15, 72, 133, 378
FaqI GGGAC 1 cut(s) 124
FatI CATG 2 cut(s) 70, 131
Fnu4HI GCNGC 2 cut(s) 183, 327
FokI GGATG 2 cut(s) 212, 271
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 183, 327
GluI GCNGC 2 cut(s) 183, 327
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 2 cut(s) 74, 135
HincII GTYRAC 2 cut(s) 241, 313
HindII GTYRAC 2 cut(s) 241, 313
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 4 cut(s) 137, 242, 295, 444
HpaII CCGG 1 cut(s) 280
Hpy166II GTNNAC 4 cut(s) 49, 241, 313, 352
Hpy188I TCNGA 4 cut(s) 151, 212, 366, 454
Hpy188III TCNNGA 4 cut(s) 155, 246, 275, 422
Hpy8I GTNNAC 4 cut(s) 49, 241, 313, 352
Hpy99I CGWCG 2 cut(s) 167, 222
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 317, 356
HpyCH4IV ACGT 2 cut(s) 45, 220
HpyCH4V TGCA 1 cut(s) 70
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 2 cut(s) 45, 220
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 2 cut(s) 74, 135
Kzo9I GATC 2 cut(s) 151, 271
LpnPI CCDG 8 cut(s) 72, 105, 168, 231, 293, 402, 435, 452
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 1 cut(s) 57
MaeII ACGT 2 cut(s) 45, 220
MalI GATC 2 cut(s) 153, 273
MboI GATC 2 cut(s) 151, 271
MboII GAAGA 6 cut(s) 17, 196, 199, 225, 353, 407
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 1 cut(s) 75
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 2 cut(s) 146, 236
MnlI CCTC 6 cut(s) 190, 236, 248, 362, 473, 478
Mox20I TGGCCA 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 72
MscI TGGCCA 1 cut(s) 39
MseI TTAA 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 1 cut(s) 280
NdeII GATC 2 cut(s) 151, 271
NlaIII CATG 2 cut(s) 74, 135
NsiI ATGCAT 1 cut(s) 72
PfeI GAWTC 2 cut(s) 295, 444
PflFI GACNNNGTC 1 cut(s) 219
PflMI CCANNNNNTGG 2 cut(s) 46, 132
PinAI ACCGGT 1 cut(s) 279
PkrI GCNGC 2 cut(s) 184, 328
PleI GAGTC 2 cut(s) 145, 236
PpsI GAGTC 2 cut(s) 145, 236
Psp124BI GAGCTC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 49, 419
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 219
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 2 cut(s) 183, 327
Sau3AI GATC 2 cut(s) 151, 271
Sau96I GGNCC 2 cut(s) 49, 419
SchI GAGTC 2 cut(s) 146, 236
SduI GDGCHC 1 cut(s) 342
SetI ASST 8 cut(s) 48, 54, 61, 120, 223, 342, 373, 421
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 2 cut(s) 49, 419
Sse9I AATT 1 cut(s) 75
SsiI CCGC 1 cut(s) 183
SstI GAGCTC 1 cut(s) 342
TaaI ACNGT 2 cut(s) 317, 356
TaiI ACGT 2 cut(s) 48, 223
TaqI TCGA 1 cut(s) 342
TasI AATT 1 cut(s) 75
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 2 cut(s) 295, 444
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 219
Van91I CCANNNNNTGG 2 cut(s) 46, 132
VpaK11BI GGWCC 2 cut(s) 49, 419
ZraI GACGTC 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.