Rmu_sc0003396.1_g000010

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003396.1
OG0000111
Physical Location & Seq
Reverse (-)
43033 .. 43554
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003396.1_g000010.1.cds

Sequence Viewer

Length: 522 bp
atgcttaatggaggacttcattggttgatgaggagactgaaaggtgactcatgggtgattgtatctctctctttagcagaagaggaggttcgggaaattccactgccgcttggtttagatgtgggaatcttcgatttcatggaattgggactgttctacacagacagcctctgtatagctcattcatttattactcaaatggtagatgaaactacaacaagcaattatgagctttgggttatgaaggaatatggggtggcggagtcttggacgaaaagaaaatcatcctacttggaatatgctatattgccttacgcttactggatggaaaaacatgttctcttctgggccgggacaagtgtggggttggaaatgcagaatttaaatgatttaagctgtcaagttctatcgattcctggatatcctacagttactgggggtggtttatacgtggagagccttttttcactcgatgatcatcgcgattttaatgagcatgaacatgagaggaatcttagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

173

Amino Acids

19.9

Weight (kDa)

4.63

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 483
AciI CCGC 2 cut(s) 107, 260
AcsI RAATTY 2 cut(s) 96, 379
AflIII ACRYGT 1 cut(s) 334
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 4 cut(s) 179, 232, 396, 519
AluI AGCT 4 cut(s) 179, 232, 396, 519
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 2 cut(s) 171, 434
AoxI GGCC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 96, 379
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 56, 67
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 28
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 352, 417
BmgT120I GGNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 352, 417
BmrI ACTGGG 1 cut(s) 444
BmuI ACTGGG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 352
Bsa29I ATCGAT 1 cut(s) 410
BsaAI YACGTR 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 477
Bse1I ACTGG 2 cut(s) 326, 439
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 1 cut(s) 417
BseCI ATCGAT 1 cut(s) 410
BseGI GGATG 2 cut(s) 284, 330
BseJI GATNNNNATC 1 cut(s) 477
BseNI ACTGG 2 cut(s) 326, 439
BseRI GAGGAG 2 cut(s) 46, 98
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 350
BshVI ATCGAT 1 cut(s) 410
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 2 cut(s) 162, 367
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 162, 367
BsnI GGCC 1 cut(s) 350
Bsp143I GATC 1 cut(s) 475
Bsp68I TCGCGA 1 cut(s) 483
BspACI CCGC 2 cut(s) 107, 260
BspANI GGCC 1 cut(s) 350
BspDI ATCGAT 1 cut(s) 410
BspFNI CGCG 1 cut(s) 483
BsrI ACTGG 2 cut(s) 326, 439
BssMI GATC 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 153, 430
Bst6I CTCTTC 2 cut(s) 75, 347
BstBAI YACGTR 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 284, 330
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 1 cut(s) 478
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 475
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 350, 415
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 410
BsuRI GGCC 1 cut(s) 350
BsuTUI ATCGAT 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 464
BtsCI GGATG 2 cut(s) 284, 330
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
BtuMI TCGCGA 1 cut(s) 483
CaiI CAGNNNCTG 2 cut(s) 171, 434
Cfr13I GGNCC 1 cut(s) 348
ClaI ATCGAT 1 cut(s) 410
CviAII CATG 5 cut(s) 51, 139, 335, 497, 503
CviJI RGCY 7 cut(s) 168, 179, 232, 350, 396, 459, 519
CviKI_1 RGCY 7 cut(s) 168, 179, 232, 350, 396, 459, 519
DdeI CTNAG 1 cut(s) 515
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
DraI TTTAAA 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 75, 347
EarI CTCTTC 2 cut(s) 75, 347
EciI GGCGGA 1 cut(s) 275
Eco32I GATATC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 415
EcoRV GATATC 1 cut(s) 422
FaeI CATG 5 cut(s) 54, 142, 338, 500, 506
FaqI GGGAC 2 cut(s) 162, 367
FatI CATG 5 cut(s) 50, 138, 334, 496, 502
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 2 cut(s) 271, 337
Fsp4HI GCNGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 351
Hin1II CATG 5 cut(s) 54, 142, 338, 500, 506
HinfI GANTC 5 cut(s) 47, 126, 263, 412, 511
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 56, 67
Hpy188III TCNNGA 2 cut(s) 92, 482
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 153, 430
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 5 cut(s) 54, 142, 338, 500, 506
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 1 cut(s) 475
LpnPI CCDG 6 cut(s) 307, 331, 364, 402, 420, 429
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 44, 430
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 3 cut(s) 92, 121, 334
MluCI AATT 4 cut(s) 96, 143, 223, 379
MlyI GAGTC 2 cut(s) 41, 272
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 6 cut(s) 5, 24, 76, 79, 179, 501
MseI TTAA 4 cut(s) 6, 383, 392, 489
MslI CAYNNNNRTG 1 cut(s) 501
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 352, 417
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 483
NciI CCSGG 1 cut(s) 352
NdeII GATC 1 cut(s) 475
NlaIII CATG 5 cut(s) 54, 142, 338, 500, 506
NmuCI GTSAC 1 cut(s) 44
NruI TCGCGA 1 cut(s) 483
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PfeI GAWTC 3 cut(s) 126, 412, 511
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 2 cut(s) 41, 271
PpsI GAGTC 2 cut(s) 41, 271
Ppu21I YACGTR 1 cut(s) 451
PscI ACATGT 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspPI GGNCC 1 cut(s) 348
PstNI CAGNNNCTG 2 cut(s) 171, 434
RruI TCGCGA 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 4 cut(s) 6, 383, 392, 489
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 2 cut(s) 41, 272
ScrFI CCNGG 2 cut(s) 352, 417
SetI ASST 7 cut(s) 46, 90, 181, 234, 398, 453, 521
SfcI CTRYAG 1 cut(s) 426
SmiI ATTTAAAT 1 cut(s) 384
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 4 cut(s) 96, 143, 223, 379
SsiI CCGC 2 cut(s) 107, 260
StyD4I CCNGG 2 cut(s) 350, 415
SwaI ATTTAAAT 1 cut(s) 384
TaaI ACNGT 2 cut(s) 153, 430
TaiI ACGT 1 cut(s) 453
TaqI TCGA 3 cut(s) 132, 410, 471
TasI AATT 4 cut(s) 96, 143, 223, 379
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 3 cut(s) 126, 412, 511
Tru1I TTAA 4 cut(s) 6, 383, 392, 489
Tru9I TTAA 4 cut(s) 6, 383, 392, 489
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 6 cut(s) 8, 127, 174, 222, 257, 513
TspRI CASTG 1 cut(s) 108
XapI RAATTY 2 cut(s) 96, 379
XceI RCATGY 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.