Rroxscaffold_2G00150740

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000111
Physical Location & Seq
Reverse (-)
88086922 .. 88087794
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150740.1

Sequence Viewer

Length: 873 bp
ATGAAGATGGAAGACCGTCGTGTCAAGTTGACGAGAAACCAAAACGTCGACCTTCCGGCGGAGATCATAGATGAGATTCTTTCTAGATTACCAGTGAAGCCCTTGTGCCGCTTCAAGTGTGTATCAAAGTCATGGCGGTCCCTGATCTCTGATCCTGATTTTATTGCCATGCACTCCTCTAAAGCCTTTGAGATTAAGGATGTGTTGTCCCAAAGACTAAAACTATTATTTACCGACCGGGAAAGTGATTGCGTTTACTCTTTGGATGTTGGCCAGCTTCTCAACCATAATTATAATGTTGAAGTTGATGGTTTAGTAGCAACATCGGCTGAGCTCGATTTTGTTTTCGATAATCTTCCAAGAAGAGGTCGATACAATTGTACTGGCCTTGTGCATACGTGCAATAGCTTCTTATTCTTCCAGATAACGGACCCTATTGAAACAAATAATGGCTTTGTGCATAACCATTTGATAACTAACCCTGGAACGAGGGAATTAAAGAAAGTACCATTGCCACCACCGTGGAGGCTACAAAGGGAGCCTGATTTTTTTGACTATTATGGTTTTGGATTTGATTACTCCACTAATCAATACAAGGTGGTTAACATGCAGGTATATGTCATTCATGGCAACATTTCTGAGATTGTCTTTAGTGTCTATACATTGGAAACTAGTTCTTGGCGACGAGTTGAGGGTGAATTTCTCTACTTTCCTATTAGTCTTGATGGGATCGTGCTGAATGGCCATGTTCATTGGTTGGCCGTGTCCTCAGATCCATCATTGTTGATTATATCTTTTAATTTAGCAAAGGATCGGAGGAGGTCAGAGAAATTCCACTACCACCCATACGACGAGAATATTATTCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

290

Amino Acids

33.79

Weight (kDa)

6.07

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 54 7.9e-12 F-box domain
F-box-like PF12937 17 - 52 1.6e-08 F-box-like
FBA_1 PF07734 115 - 273 1.6e-13 F-box associated beta propeller domain
FBA_3 PF08268 155 - 279 1.1e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AasI GACNNNNNNGTC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 48
AciI CCGC 3 cut(s) 59, 109, 136
AclWI GGATC 4 cut(s) 146, 737, 767, 819
AcoI YGGCCR 3 cut(s) 271, 742, 759
AcsI RAATTY 2 cut(s) 698, 830
AfaI GTAC 2 cut(s) 382, 507
AfiI CCNNNNNNNGG 3 cut(s) 58, 365, 427
AgsI TTSAA 4 cut(s) 115, 302, 440, 866
AhlI ACTAGT 1 cut(s) 671
AjnI CCWGG 1 cut(s) 481
AleI CACNNNNGTG 1 cut(s) 520
AluBI AGCT 3 cut(s) 277, 334, 408
AluI AGCT 3 cut(s) 277, 334, 408
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 4 cut(s) 146, 737, 767, 819
AoxI GGCC 4 cut(s) 271, 385, 742, 759
ApoI RAATTY 2 cut(s) 698, 830
AspS9I GGNCC 2 cut(s) 138, 430
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 707
AvaII GGWCC 2 cut(s) 138, 430
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BalI TGGCCA 2 cut(s) 273, 744
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 3 cut(s) 302, 719, 784
BceAI ACGGC 1 cut(s) 746
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 1 cut(s) 239
BcuI ACTAGT 1 cut(s) 671
BfaI CTAG 2 cut(s) 84, 672
BfuAI ACCTGC 1 cut(s) 601
BisI GCNGC 1 cut(s) 109
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 239, 483
Bme18I GGWCC 2 cut(s) 138, 430
BmgT120I GGNCC 2 cut(s) 138, 430
BmiI GGNNCC 3 cut(s) 140, 432, 540
BmrFI CCNGG 2 cut(s) 239, 483
BpiI GAAGAC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 481, 521
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 365, 427
Bse1I ACTGG 2 cut(s) 92, 388
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 481, 521
BseGI GGATG 2 cut(s) 205, 271
BseLI CCNNNNNNNGG 3 cut(s) 58, 365, 427
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 321, 630, 783
BseNI ACTGG 2 cut(s) 92, 388
BseRI GAGGAG 2 cut(s) 166, 832
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 273, 387, 744, 761
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 56, 238
BslFI GGGAC 2 cut(s) 124, 193
BslI CCNNNNNNNGG 3 cut(s) 58, 365, 427
BsmFI GGGAC 2 cut(s) 124, 193
BsnI GGCC 4 cut(s) 273, 387, 744, 761
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 6 cut(s) 63, 144, 151, 729, 772, 811
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 59, 109, 136
BspANI GGCC 4 cut(s) 273, 387, 744, 761
BspCNI CTCAG 3 cut(s) 322, 631, 782
BspLI GGNNCC 3 cut(s) 140, 432, 540
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 4 cut(s) 146, 737, 767, 819
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 2 cut(s) 92, 388
BssECI CCNNGG 2 cut(s) 481, 521
BssMI GATC 6 cut(s) 63, 144, 151, 729, 772, 811
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 17, 522
Bst6I CTCTTC 1 cut(s) 358
BstBAI YACGTR 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 330, 639, 769
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 205, 271
BstKTI GATC 6 cut(s) 66, 147, 154, 732, 775, 814
BstMBI GATC 6 cut(s) 63, 144, 151, 729, 772, 811
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 237, 481
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 1 cut(s) 772
BsuRI GGCC 4 cut(s) 273, 387, 744, 761
BtgI CCRYGG 1 cut(s) 521
BtsCI GGATG 2 cut(s) 205, 271
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 138, 430
Csp6I GTAC 2 cut(s) 381, 506
CviAII CATG 5 cut(s) 132, 169, 607, 626, 746
CviQI GTAC 2 cut(s) 381, 506
DdeI CTNAG 3 cut(s) 330, 639, 769
DpnI GATC 6 cut(s) 65, 146, 153, 731, 774, 813
DpnII GATC 6 cut(s) 63, 144, 151, 729, 772, 811
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 3 cut(s) 271, 742, 759
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 138, 430
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 5 cut(s) 135, 172, 610, 629, 749
FaqI GGGAC 2 cut(s) 124, 193
FatI CATG 5 cut(s) 131, 168, 606, 625, 745
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 212, 278
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 2 cut(s) 84, 672
GluI GCNGC 1 cut(s) 109
HaeIII GGCC 4 cut(s) 273, 387, 744, 761
HapII CCGG 2 cut(s) 56, 238
Hin1II CATG 5 cut(s) 135, 172, 610, 629, 749
HincII GTYRAC 3 cut(s) 30, 49, 604
HindII GTYRAC 3 cut(s) 30, 49, 604
HinfI GANTC 1 cut(s) 76
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 2 cut(s) 56, 238
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 4 cut(s) 30, 49, 256, 604
Hpy188I TCNGA 5 cut(s) 151, 640, 772, 816, 826
Hpy188III TCNNGA 5 cut(s) 84, 155, 421, 722, 866
Hpy8I GTNNAC 4 cut(s) 30, 49, 256, 604
Hpy99I CGWCG 4 cut(s) 21, 50, 687, 854
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 17, 522
HpyCH4IV ACGT 2 cut(s) 45, 398
HpyCH4V TGCA 5 cut(s) 172, 394, 402, 460, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 3 cut(s) 330, 639, 769
HpySE526I ACGT 2 cut(s) 45, 398
Hsp92II CATG 5 cut(s) 135, 172, 610, 629, 749
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 6 cut(s) 63, 144, 151, 729, 772, 811
LmnI GCTCC 1 cut(s) 538
MaeI CTAG 2 cut(s) 84, 672
MaeII ACGT 2 cut(s) 45, 398
MalI GATC 6 cut(s) 65, 146, 153, 731, 774, 813
MboI GATC 6 cut(s) 63, 144, 151, 729, 772, 811
MboII GAAGA 5 cut(s) 16, 23, 347, 375, 409
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 2 cut(s) 273, 744
MluCI AATT 6 cut(s) 289, 376, 494, 698, 799, 830
MluNI TGGCCA 2 cut(s) 273, 744
MnlI CCTC 8 cut(s) 187, 359, 483, 519, 685, 778, 810, 813
Mox20I TGGCCA 2 cut(s) 273, 744
MscI TGGCCA 2 cut(s) 273, 744
MseI TTAA 4 cut(s) 195, 497, 603, 798
MslI CAYNNNNRTG 1 cut(s) 520
Msp20I TGGCCA 2 cut(s) 273, 744
MspI CCGG 2 cut(s) 56, 238
MspR9I CCNGG 2 cut(s) 239, 483
MunI CAATTG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 239
NdeII GATC 6 cut(s) 63, 144, 151, 729, 772, 811
NlaIII CATG 5 cut(s) 135, 172, 610, 629, 749
NlaIV GGNNCC 3 cut(s) 140, 432, 540
NspI RCATGY 1 cut(s) 610
OliI CACNNNNGTG 1 cut(s) 520
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 399
PsiI TTATAA 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 3 cut(s) 140, 432, 540
PspPI GGNCC 2 cut(s) 138, 430
PsuI RGATCY 1 cut(s) 772
RsaI GTAC 2 cut(s) 382, 507
RsaNI GTAC 2 cut(s) 381, 506
RseI CAYNNNNRTG 1 cut(s) 520
SacI GAGCTC 1 cut(s) 336
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 195, 497, 603, 798
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 6 cut(s) 63, 144, 151, 729, 772, 811
Sau96I GGNCC 2 cut(s) 138, 430
ScrFI CCNGG 2 cut(s) 239, 483
SduI GDGCHC 1 cut(s) 336
SinI GGWCC 2 cut(s) 138, 430
SmiMI CAYNNNNRTG 1 cut(s) 520
SpeI ACTAGT 1 cut(s) 671
Sse9I AATT 6 cut(s) 289, 376, 494, 698, 799, 830
SsiI CCGC 3 cut(s) 59, 109, 136
SspI AATATT 1 cut(s) 859
SspMI CTAG 2 cut(s) 84, 672
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 237, 481
TaaI ACNGT 2 cut(s) 17, 522
TaiI ACGT 2 cut(s) 48, 401
TaqI TCGA 4 cut(s) 48, 336, 348, 370
TasI AATT 6 cut(s) 289, 376, 494, 698, 799, 830
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 4 cut(s) 195, 497, 603, 798
Tru9I TTAA 4 cut(s) 195, 497, 603, 798
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 17, 614, 740
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 138, 430
XapI RAATTY 2 cut(s) 698, 830
XbaI TCTAGA 1 cut(s) 83
XceI RCATGY 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 2 cut(s) 84, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.