Rroxscaffold_1G00052600

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000111
Physical Location & Seq
Forward (+)
73385816 .. 73388582
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052600.1

Sequence Viewer

Length: 636 bp
ATGGTTCAGTTACAGGAGCCTTTCAATGTGAAGCCACCACGTTCAGCTCTAGCTGCCTCATATGTGACTCTCGTGGATTTGGTCTACTATAGAAATCACGGTCCTATTCAAATAATCGATGACAGCCACAGGTTATATAAGGGAAACTACGAGCAAAACTCCGACTGTCCGGGGAGTAATATAAAGGTGGTGATGTTTCTGCTTTTGGAAATGAATTTAGGTGGGGTGAAGTTGCTCAAATCTGAAGTTTCAATGTCAAGTGAGGTAGGCATGCCAAACCTTCCAGACGATATGTTTGAAGAGATACTCTCTCGACTTCCTGTCAAGCATTTGTGTCGATTCAAGTGCGTCTCAAAGTCATGGCTCCATCTCATTGCTAAACCACACTTCATTGAAACTCAACTCAACCGAACGCAGAAGCACAAAGTCATTTTCGGTACCGACACTTCACTCTCTTCCTTGGACCTTGAAGCAGCTATAGATGATGACAATATGCCTCCCTCGTCGCTTGATTTTCCACTCAAGGGCAAACCCGGCACTAGGCTTAAGATGGTTGGTCTCTCTAATGGTTTGGCCTGCATCATGCCTCAACCAGATGCCTTGTTCATATTCAACCCTAGCACAGGGAGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

211

Amino Acids

23.5

Weight (kDa)

6.58

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 92 - 130 9.5e-12 F-box domain
F-box-like PF12937 92 - 128 5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 437
AccI GTMKAC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 3 cut(s) 524, 540, 623
AflII CTTAAG 1 cut(s) 545
AgsI TTSAA 8 cut(s) 25, 110, 252, 299, 343, 395, 470, 613
AhdI GACNNNNNGTC 1 cut(s) 320
AluBI AGCT 3 cut(s) 47, 53, 476
AluI AGCT 3 cut(s) 47, 53, 476
Alw26I GTCTC 2 cut(s) 355, 563
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 2 cut(s) 53, 473
ApoI RAATTY 1 cut(s) 214
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
Asp718I GGTACC 1 cut(s) 437
AspS9I GGNCC 2 cut(s) 101, 463
AsuC2I CCSGG 2 cut(s) 171, 534
AsuHPI GGTGA 2 cut(s) 202, 238
AvaII GGWCC 2 cut(s) 101, 463
BanI GGYRCC 1 cut(s) 437
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BauI CACGAG 1 cut(s) 71
BbvI GCAGC 2 cut(s) 40, 485
BccI CCATC 2 cut(s) 375, 544
BcgI CGANNNNNNTGC 4 cut(s) 317, 327, 351, 361
BcnI CCSGG 2 cut(s) 171, 534
BcoDI GTCTC 2 cut(s) 355, 563
BfaI CTAG 3 cut(s) 50, 540, 618
BfmI CTRYAG 2 cut(s) 88, 477
BfrI CTTAAG 1 cut(s) 545
BisI GCNGC 2 cut(s) 54, 474
BlsI GCNGC 2 cut(s) 55, 475
Bme1390I CCNGG 2 cut(s) 171, 534
Bme18I GGWCC 2 cut(s) 101, 463
BmeRI GACNNNNNGTC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 101, 463
BmiI GGNNCC 3 cut(s) 18, 365, 439
BmrFI CCNGG 2 cut(s) 171, 534
BmsI GCATC 2 cut(s) 586, 588
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 293, 325
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 2 cut(s) 171, 534
Bsa29I ATCGAT 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 2 cut(s) 170, 459
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 540, 623
Bse3DI GCAATG 1 cut(s) 372
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 170, 459
BseLI CCNNNNNNNGG 3 cut(s) 524, 540, 623
BseMI GCAATG 1 cut(s) 372
BseXI GCAGC 2 cut(s) 40, 485
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 1 cut(s) 437
BshVI ATCGAT 1 cut(s) 117
BsiSI CCGG 2 cut(s) 170, 534
BslI CCNNNNNNNGG 3 cut(s) 524, 540, 623
BsmAI GTCTC 2 cut(s) 355, 563
BsmBI CGTCTC 1 cut(s) 355
BsnI GGCC 1 cut(s) 575
Bso31I GGTCTC 1 cut(s) 563
BspANI GGCC 1 cut(s) 575
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 18, 365, 439
BspT107I GGYRCC 1 cut(s) 437
BspTI CTTAAG 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 372
BssECI CCNNGG 2 cut(s) 170, 459
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 101, 167
Bst6I CTCTTC 2 cut(s) 294, 460
BstAFI CTTAAG 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 272, 577
BstENI CCTNNNNNAGG 1 cut(s) 621
BstMAI GTCTC 2 cut(s) 355, 563
BstMWI GCNNNNNNNGC 2 cut(s) 53, 534
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 169, 532
BstSFI CTRYAG 2 cut(s) 88, 477
BstV1I GCAGC 2 cut(s) 40, 485
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 1 cut(s) 575
BsuTUI ATCGAT 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 272, 577
Cfr13I GGNCC 2 cut(s) 101, 463
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 438
CviAII CATG 4 cut(s) 271, 360, 583, 633
CviJI RGCY 9 cut(s) 19, 34, 47, 53, 126, 364, 476, 544, 575
CviKI_1 RGCY 9 cut(s) 19, 34, 47, 53, 126, 364, 476, 544, 575
CviQI GTAC 1 cut(s) 438
DriI GACNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 294, 460
Eam1105I GACNNNNNGTC 1 cut(s) 320
EarI CTCTTC 2 cut(s) 294, 460
Eco130I CCWWGG 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 563
Eco47I GGWCC 2 cut(s) 101, 463
Eco57I CTGAAG 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 4 cut(s) 274, 363, 586, 636
FatI CATG 4 cut(s) 270, 359, 582, 632
FauNDI CATATG 1 cut(s) 61
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 54, 474
Fsp4HI GCNGC 2 cut(s) 54, 474
FspBI CTAG 3 cut(s) 50, 540, 618
GluI GCNGC 2 cut(s) 54, 474
HaeIII GGCC 1 cut(s) 575
HapII CCGG 2 cut(s) 170, 534
HgaI GACGC 1 cut(s) 337
Hin1II CATG 4 cut(s) 274, 363, 586, 636
HinfI GANTC 3 cut(s) 67, 339, 628
HpaII CCGG 2 cut(s) 170, 534
HphI GGTGA 2 cut(s) 202, 238
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 163, 244
Hpy188III TCNNGA 2 cut(s) 284, 312
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 508
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 101, 167
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 534
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 4 cut(s) 274, 363, 586, 636
KpnI GGTACC 1 cut(s) 441
LmnI GCTCC 2 cut(s) 16, 369
LpnPI CCDG 8 cut(s) 115, 183, 297, 333, 547, 589, 606, 609
Lsp1109I GCAGC 2 cut(s) 40, 485
LweI GCATC 2 cut(s) 586, 588
MaeI CTAG 3 cut(s) 50, 540, 618
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 2 cut(s) 9, 64
MboII GAAGA 2 cut(s) 311, 447
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 5 cut(s) 67, 256, 507, 511, 597
MseI TTAA 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 2 cut(s) 170, 534
MspR9I CCNGG 2 cut(s) 171, 534
MwoI GCNNNNNNNGC 2 cut(s) 53, 534
NciI CCSGG 2 cut(s) 171, 534
NdeI CATATG 1 cut(s) 61
NlaIII CATG 4 cut(s) 274, 363, 586, 636
NlaIV GGNNCC 3 cut(s) 18, 365, 439
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 339
PkrI GCNGC 2 cut(s) 55, 475
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 18, 365, 439
PspPI GGNCC 2 cut(s) 101, 463
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 54, 474
Sau96I GGNCC 2 cut(s) 101, 463
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 171, 534
SfaNI GCATC 2 cut(s) 586, 588
SfcI CTRYAG 2 cut(s) 88, 477
SinI GGWCC 2 cut(s) 101, 463
SmlI CTYRAG 2 cut(s) 521, 545
SmoI CTYRAG 2 cut(s) 521, 545
SphI GCATGC 1 cut(s) 274
Sse9I AATT 1 cut(s) 214
SspMI CTAG 3 cut(s) 50, 540, 618
StyD4I CCNGG 2 cut(s) 169, 532
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 2 cut(s) 101, 167
TaiI ACGT 1 cut(s) 43
TaqI TCGA 3 cut(s) 117, 313, 337
TasI AATT 1 cut(s) 214
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 53, 473
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 227, 379, 595
Vha464I CTTAAG 1 cut(s) 545
VpaK11BI GGWCC 2 cut(s) 101, 463
XagI CCTNNNNNAGG 1 cut(s) 621
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 3 cut(s) 50, 540, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.