FvH4_3g18161

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000111
Physical Location & Seq
Forward (+)
11592210 .. 11593969
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18161.t1

Sequence Viewer

Length: 903 bp
ATGGCGGTATCAAGTTCATCAACAACCATTAGTTCATCCAGCATAGCTTTTAAGCTTTTGCAGAAACATGGTTGGAAAGAGGGTACTGGTCTTGGGATATCTGAGCAGGGAAGGTTGGAGCCTGTAAAAACCTACTTGAAGAATAACAAACTGGGCCTGGGAGCAGATAACTTACCTAAGAAGAAGCTGCAGTCAACAACCAAGAAATCTCGACTGGCAAAGAAAAGGAGGAAGATGCAGGAGTTGGAAAAAAGATTGCAAGAGAAGGAATTTGAGCGCACCTTCTGTAGGGAGTTCTGGCCAGATAATGAAGACGTCAATAATCTATTCCGTTTCGTTCCTCTACCGATTTGCAAAGATAAAAACCTAAGTGAAGGAACTCAAGGAAGAGGAGAGGAGAGGAAGGAGAAAGAGTCAAGTCATTATGTCGCTTCAGGTGTGTATCCAAGTCTTGATTGGCTTTCGCTAATCTTAGACCTCCAATTTGTCAAGATGCATTTCAAAAGAGCCATTGAAAATGAGCATGTGTTTTACCAGAGAAGAAAACTCTTATTCACTGATGAAATTCGGGATTCACTTTACTCTTTCGACCTTGATGAGTATCTGAATCATTATAAGGATCACCCGTTTGTGAATGGTACTGGTAACTGTAACGATGTCGGTGTTATTGTTAATGATTATGATGGTGATCTAGTTGTCACTAGACTTGAACTGCCCGGTTGTGTTAGGGTCTCTGAAATTATAATTGAATGTTGGAGGATGGTGTCGATCTGCTGTGGCCTTGTGTTATTAACTTATGGTCATTCGGAGTTTTATGTGGCCAACCTAGCAACAAGGAAGTATAAGAGACAAGCAACAAGGAGTTTTACATTTCTAAGTTCAGTTGTGAGTCCGTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

301

Amino Acids

34.57

Weight (kDa)

9.01

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 13 - 56 1.3e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 615, 743
AatII GACGTC 1 cut(s) 318
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 627
AcoI YGGCCR 2 cut(s) 299, 819
AcsI RAATTY 2 cut(s) 269, 564
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 2 cut(s) 85, 640
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 5 cut(s) 139, 502, 515, 710, 749
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 3 cut(s) 47, 55, 187
AluI AGCT 3 cut(s) 47, 55, 187
Alw26I GTCTC 2 cut(s) 736, 841
AlwI GGATC 1 cut(s) 627
AoxI GGCC 4 cut(s) 154, 299, 778, 819
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 269, 564
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 2 cut(s) 614, 698
BalI TGGCCA 2 cut(s) 301, 821
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 174
BccI CCATC 2 cut(s) 677, 754
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 453
BcnI CCSGG 1 cut(s) 717
BcoDI GTCTC 2 cut(s) 736, 841
BfaI CTAG 3 cut(s) 692, 702, 827
BfmI CTRYAG 2 cut(s) 188, 286
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 2 cut(s) 158, 717
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 158, 717
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 225, 483
BmuI ACTGGG 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 717
BsaBI GATNNNNATC 2 cut(s) 600, 687
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 4 cut(s) 91, 156, 219, 646
Bse8I GATNNNNATC 2 cut(s) 600, 687
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 35, 765
BseJI GATNNNNATC 2 cut(s) 600, 687
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 4 cut(s) 91, 156, 219, 646
BseRI GAGGAG 2 cut(s) 405, 410
BseXI GCAGC 1 cut(s) 174
BshFI GGCC 4 cut(s) 156, 301, 780, 821
BsiSI CCGG 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 736, 841
BsnI GGCC 4 cut(s) 156, 301, 780, 821
Bso31I GGTCTC 1 cut(s) 736
Bsp143I GATC 3 cut(s) 619, 688, 768
BspACI CCGC 1 cut(s) 5
BspANI GGCC 4 cut(s) 156, 301, 780, 821
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 192
BspPI GGATC 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 736
BsrI ACTGG 4 cut(s) 91, 156, 219, 646
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 3 cut(s) 619, 688, 768
BssNI GRCGYC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 1 cut(s) 382
BstACI GRCGYC 1 cut(s) 315
BstDEI CTNAG 5 cut(s) 102, 177, 368, 472, 875
BstENI CCTNNNNNAGG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 35, 765
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 622, 691, 771
BstMAI GTCTC 2 cut(s) 736, 841
BstMBI GATC 3 cut(s) 619, 688, 768
BstMWI GCNNNNNNNGC 1 cut(s) 827
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 156, 715
BstSFI CTRYAG 2 cut(s) 188, 286
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 318
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 4 cut(s) 156, 301, 780, 821
BtsCI GGATG 2 cut(s) 35, 765
BtsIMutI CAGTG 1 cut(s) 555
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 84, 639
CviAII CATG 2 cut(s) 68, 524
CviQI GTAC 2 cut(s) 84, 639
DdeI CTNAG 5 cut(s) 102, 177, 368, 472, 875
DpnI GATC 3 cut(s) 621, 690, 770
DpnII GATC 3 cut(s) 619, 688, 768
EaeI YGGCCR 2 cut(s) 299, 819
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 736
Eco32I GATATC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 417
EcoNI CCTNNNNNAGG 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 498
FaeI CATG 2 cut(s) 71, 527
FatI CATG 2 cut(s) 67, 523
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 2 cut(s) 22, 772
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 3 cut(s) 692, 702, 827
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 188
HaeIII GGCC 4 cut(s) 156, 301, 780, 821
HapII CCGG 1 cut(s) 717
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 2 cut(s) 71, 527
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 4 cut(s) 413, 572, 607, 889
HpaII CCGG 1 cut(s) 717
HphI GGTGA 2 cut(s) 614, 698
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 4 cut(s) 103, 606, 736, 808
Hpy188III TCNNGA 4 cut(s) 210, 452, 490, 569
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 5 cut(s) 105, 259, 292, 368, 397
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 6 cut(s) 61, 190, 238, 259, 354, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 827
HpyF3I CTNAG 5 cut(s) 102, 177, 368, 472, 875
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 2 cut(s) 71, 527
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 3 cut(s) 619, 688, 768
LmnI GCTCC 2 cut(s) 118, 161
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 2 cut(s) 225, 483
MaeI CTAG 3 cut(s) 692, 702, 827
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 644, 650, 697
MalI GATC 3 cut(s) 621, 690, 770
MboI GATC 3 cut(s) 619, 688, 768
MboII GAAGA 6 cut(s) 151, 193, 244, 323, 399, 552
MlsI TGGCCA 2 cut(s) 301, 821
MluCI AATT 5 cut(s) 269, 482, 564, 738, 744
MluNI TGGCCA 2 cut(s) 301, 821
MlyI GAGTC 2 cut(s) 422, 898
MmeI TCCRAC 4 cut(s) 53, 96, 225, 734
MnlI CCTC 8 cut(s) 73, 222, 351, 383, 388, 393, 488, 750
Mox20I TGGCCA 2 cut(s) 301, 821
Mph1103I ATGCAT 1 cut(s) 498
MscI TGGCCA 2 cut(s) 301, 821
MseI TTAA 3 cut(s) 51, 672, 791
Msp20I TGGCCA 2 cut(s) 301, 821
MspI CCGG 1 cut(s) 717
MspR9I CCNGG 2 cut(s) 158, 717
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 827
NciI CCSGG 1 cut(s) 717
NdeII GATC 3 cut(s) 619, 688, 768
NlaIII CATG 2 cut(s) 71, 527
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 697
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 527
PfeI GAWTC 2 cut(s) 572, 607
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 2 cut(s) 421, 897
PpsI GAGTC 2 cut(s) 421, 897
PsiI TTATAA 2 cut(s) 615, 743
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 1 cut(s) 192
RsaI GTAC 2 cut(s) 85, 640
RsaNI GTAC 2 cut(s) 84, 639
SaqAI TTAA 3 cut(s) 51, 672, 791
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 3 cut(s) 619, 688, 768
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 2 cut(s) 422, 898
ScrFI CCNGG 2 cut(s) 158, 717
SfaNI GCATC 2 cut(s) 225, 483
SfcI CTRYAG 2 cut(s) 188, 286
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 5 cut(s) 269, 482, 564, 738, 744
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 692, 702, 827
StyD4I CCNGG 2 cut(s) 156, 715
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 211, 588, 767
TasI AATT 5 cut(s) 269, 482, 564, 738, 744
TfiI GAWTC 2 cut(s) 572, 607
Tru1I TTAA 3 cut(s) 51, 672, 791
Tru9I TTAA 3 cut(s) 51, 672, 791
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 4 cut(s) 6, 24, 324, 576
TspGWI ACGGA 2 cut(s) 320, 882
TspRI CASTG 1 cut(s) 562
XagI CCTNNNNNAGG 1 cut(s) 286
XapI RAATTY 2 cut(s) 269, 564
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XspI CTAG 3 cut(s) 692, 702, 827
ZraI GACGTC 1 cut(s) 316
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.