Rmu_sc0005008.1_g000015

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005008.1
OG0000111
Physical Location & Seq
Forward (+)
58759 .. 60236
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005008.1_g000015.1.cds

Sequence Viewer

Length: 1008 bp
atgaatgcactgatcatcacgccagcgtactcccactccaagtcctctcactcggttacgcttctctggcccaagaacctctgcatagatgtcttctctaacttgtgcgtatcaaagccctggcgttctctaatctccaacaaaaagtccattgcaatgcacaccaggaaagccctcgaggataaagaggacgtcatgcttgggttcccttcatctactcctgcaataacggccttgttgtgcgacacgatgtgtgggttttatttggttaaccctgctaccagggagatgaagaaagtaccaaagacaccatcatggagacctatgaggctcttttgcatgagcttatgtggatttggatttgattactccaccaatgactataaggtggttaacgggcaggtctatcctgatatcgatgaaatcgtatttagtgtctatacattgaaaactggttcttggcgacagatacagtgcccctcttcctaccacgctgattctttttatgggatttttctgaatgaagctattcattggtcggcagacacagttggagatcgatcctcttcggtgattgtatcttttctattagcagaggtggaggtttgcgaaattcaactcccacccatcgatggtggttgtttaacaaatctgggagtgtttagagactgcctgtgtgtaacgctcatcggcatttataatcaaacatttaatgagttttgggtcatgaaagaatatagggtgagcgagtcttggactagaatgagggtctccatgccatatcagcaattgttacaatttggtttctctacaaaatctcatgatctgatggtgtgtgatagttcatttgttatgtacgacttcagaaaagaaagttgtaggaaccttccgattcgtgatatacctaaagttggatattgtattgggatttatgttgagggactttctccacttatggatcaagagcgggacgagagatgtaaagaagatgaatcgagtattaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

335

Amino Acids

38.22

Weight (kDa)

5.91

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AatII GACGTC 1 cut(s) 195
AbsI CCTCGAGG 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 967
AciI CCGC 1 cut(s) 967
AclWI GGATC 2 cut(s) 555, 966
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 1 cut(s) 847
AcyI GRCGYC 1 cut(s) 192
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 3 cut(s) 29, 300, 857
AfiI CCNNNNNNNGG 2 cut(s) 632, 911
AgsI TTSAA 2 cut(s) 448, 617
AjnI CCWGG 3 cut(s) 119, 164, 281
AluBI AGCT 2 cut(s) 345, 527
AluI AGCT 2 cut(s) 345, 527
Alw26I GTCTC 3 cut(s) 313, 660, 775
AlwI GGATC 2 cut(s) 555, 966
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 2 cut(s) 68, 231
ApoI RAATTY 1 cut(s) 612
AseI ATTAAT 1 cut(s) 1002
Asp700I GAANNNNTTC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 583, 754
AvaI CYCGRG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 85
BccI CCATC 4 cut(s) 319, 626, 635, 823
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 3 cut(s) 121, 166, 283
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 3 cut(s) 313, 660, 775
BfaI CTAG 1 cut(s) 759
BfuAI ACCTGC 1 cut(s) 391
Bme1390I CCNGG 3 cut(s) 121, 166, 283
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 2 cut(s) 206, 884
BmrFI CCNGG 3 cut(s) 121, 166, 283
BpiI GAAGAC 1 cut(s) 85
Bsa29I ATCGAT 3 cut(s) 417, 559, 630
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 2 cut(s) 313, 775
BsaJI CCNNGG 2 cut(s) 119, 282
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 911
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 2 cut(s) 150, 162
BseBI CCWGG 3 cut(s) 121, 166, 283
BseCI ATCGAT 3 cut(s) 417, 559, 630
BseDI CCNNGG 2 cut(s) 119, 282
BseLI CCNNNNNNNGG 2 cut(s) 632, 911
BseMI GCAATG 2 cut(s) 150, 162
BseNI ACTGG 1 cut(s) 457
BseSI GKGCMC 1 cut(s) 479
BshFI GGCC 2 cut(s) 70, 233
BshVI ATCGAT 3 cut(s) 417, 559, 630
BsiHKCI CYCGRG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 954, 983
BslI CCNNNNNNNGG 2 cut(s) 632, 911
BsmAI GTCTC 3 cut(s) 313, 660, 775
BsmFI GGGAC 2 cut(s) 954, 983
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 70, 233
Bso31I GGTCTC 2 cut(s) 313, 775
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 5 cut(s) 12, 556, 560, 823, 958
BspACI CCGC 1 cut(s) 967
BspANI GGCC 2 cut(s) 70, 233
BspDI ATCGAT 3 cut(s) 417, 559, 630
BspHI TCATGA 2 cut(s) 726, 820
BspLI GGNNCC 2 cut(s) 206, 884
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 2 cut(s) 555, 966
BspTNI GGTCTC 2 cut(s) 313, 775
BsrBI CCGCTC 1 cut(s) 967
BsrDI GCAATG 2 cut(s) 150, 162
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 119, 282
BssMI GATC 5 cut(s) 12, 556, 560, 823, 958
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 3 cut(s) 121, 166, 283
Bst4CI ACNGT 2 cut(s) 474, 550
Bst6I CTCTTC 2 cut(s) 487, 571
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 24
BstKTI GATC 5 cut(s) 15, 559, 563, 826, 961
BstMAI GTCTC 3 cut(s) 313, 660, 775
BstMBI GATC 5 cut(s) 12, 556, 560, 823, 958
BstMWI GCNNNNNNNGC 3 cut(s) 67, 230, 784
BstNI CCWGG 3 cut(s) 121, 166, 283
BstSCI CCNGG 3 cut(s) 119, 164, 281
BstSLI GKGCMC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 85
Bsu15I ATCGAT 3 cut(s) 417, 559, 630
BsuRI GGCC 2 cut(s) 70, 233
BsuTUI ATCGAT 3 cut(s) 417, 559, 630
BtsIMutI CAGTG 2 cut(s) 8, 479
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 24
CciI TCATGA 2 cut(s) 726, 820
Cfr13I GGNCC 1 cut(s) 69
ClaI ATCGAT 3 cut(s) 417, 559, 630
Csp6I GTAC 3 cut(s) 28, 299, 856
CviAII CATG 6 cut(s) 196, 315, 340, 727, 775, 821
CviJI RGCY 7 cut(s) 70, 118, 173, 233, 331, 345, 527
CviKI_1 RGCY 7 cut(s) 70, 118, 173, 233, 331, 345, 527
CviQI GTAC 3 cut(s) 28, 299, 856
DpnI GATC 5 cut(s) 14, 558, 562, 825, 960
DpnII GATC 5 cut(s) 12, 556, 560, 823, 958
DraIII CACNNNGTG 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 487, 571
EarI CTCTTC 2 cut(s) 487, 571
Eco31I GGTCTC 2 cut(s) 313, 775
Eco32I GATATC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 847
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 3 cut(s) 119, 164, 281
EcoRV GATATC 1 cut(s) 415
FaeI CATG 6 cut(s) 199, 318, 343, 730, 778, 824
FaqI GGGAC 2 cut(s) 954, 983
FatI CATG 6 cut(s) 195, 314, 339, 726, 774, 820
FauI CCCGC 1 cut(s) 960
FbaI TGATCA 1 cut(s) 12
FspBI CTAG 1 cut(s) 759
HaeIII GGCC 2 cut(s) 70, 233
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 6 cut(s) 199, 318, 343, 730, 778, 824
HincII GTYRAC 2 cut(s) 271, 394
HindII GTYRAC 2 cut(s) 271, 394
HinfI GANTC 4 cut(s) 497, 749, 892, 992
HpaI GTTAAC 2 cut(s) 271, 394
HphI GGTGA 2 cut(s) 583, 754
Hpy166II GTNNAC 2 cut(s) 271, 394
Hpy188I TCNGA 4 cut(s) 519, 828, 866, 891
Hpy188III TCNNGA 5 cut(s) 410, 727, 821, 896, 962
Hpy8I GTNNAC 2 cut(s) 271, 394
HpyAV CCTTC 2 cut(s) 219, 896
HpyCH4III ACNGT 2 cut(s) 474, 550
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 6 cut(s) 8, 84, 155, 160, 224, 339
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 230, 784
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 6 cut(s) 199, 318, 343, 730, 778, 824
Ksp22I TGATCA 1 cut(s) 12
KspAI GTTAAC 2 cut(s) 271, 394
Kzo9I GATC 5 cut(s) 12, 556, 560, 823, 958
MaeI CTAG 1 cut(s) 759
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 3 cut(s) 55, 679, 792
MalI GATC 5 cut(s) 14, 558, 562, 825, 960
MbiI CCGCTC 1 cut(s) 967
MboI GATC 5 cut(s) 12, 556, 560, 823, 958
MboII GAAGA 5 cut(s) 85, 304, 474, 558, 998
MfeI CAATTG 1 cut(s) 788
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 4 cut(s) 612, 788, 797, 1003
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 3 cut(s) 162, 532, 892
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 5 cut(s) 270, 393, 644, 711, 1002
MslI CAYNNNNRTG 2 cut(s) 155, 313
MspR9I CCNGG 3 cut(s) 121, 166, 283
MunI CAATTG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 3 cut(s) 121, 166, 283
MwoI GCNNNNNNNGC 3 cut(s) 67, 230, 784
NdeII GATC 5 cut(s) 12, 556, 560, 823, 958
NlaIII CATG 6 cut(s) 199, 318, 343, 730, 778, 824
NlaIV GGNNCC 2 cut(s) 206, 884
PaeR7I CTCGAG 1 cut(s) 176
PagI TCATGA 2 cut(s) 726, 820
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 3 cut(s) 497, 892, 992
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PshBI ATTAAT 1 cut(s) 1002
PsiI TTATAA 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 119, 164, 281
PspGI CCWGG 3 cut(s) 119, 164, 281
PspN4I GGNNCC 2 cut(s) 206, 884
PspPI GGNCC 1 cut(s) 69
PspXI VCTCGAGB 1 cut(s) 176
RsaI GTAC 3 cut(s) 29, 300, 857
RsaNI GTAC 3 cut(s) 28, 299, 856
RseI CAYNNNNRTG 2 cut(s) 155, 313
SaqAI TTAA 5 cut(s) 270, 393, 644, 711, 1002
Sau3AI GATC 5 cut(s) 12, 556, 560, 823, 958
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 3 cut(s) 121, 166, 283
SduI GDGCHC 1 cut(s) 479
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 155, 313
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 4 cut(s) 612, 788, 797, 1003
SsiI CCGC 1 cut(s) 967
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 3 cut(s) 119, 164, 281
TaaI ACNGT 2 cut(s) 474, 550
TaiI ACGT 1 cut(s) 195
TaqI TCGA 5 cut(s) 177, 417, 559, 630, 995
TasI AATT 4 cut(s) 612, 788, 797, 1003
TfiI GAWTC 3 cut(s) 497, 892, 992
Tru1I TTAA 5 cut(s) 270, 393, 644, 711, 1002
Tru9I TTAA 5 cut(s) 270, 393, 644, 711, 1002
TscAI CASTG 2 cut(s) 15, 479
TspDTI ATGAA 9 cut(s) 17, 201, 305, 435, 521, 537, 743, 834, 1005
TspRI CASTG 2 cut(s) 15, 479
VspI ATTAAT 1 cut(s) 1002
XapI RAATTY 1 cut(s) 612
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 1 cut(s) 759
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.