Rorug05G0094100

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000111
Physical Location & Seq
Forward (+)
8406740 .. 8409464
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0094100.1

Sequence Viewer

Length: 699 bp
ATGGCGGTGGAAGACGCAGGCAAGACTTCAGCTTCGGAAGATCAGAGCAAGACGGAGTCGAACCCAAAATCAATGCAAGACGAGAACGAGCTGGAAGAAGGAGAGATCGTCGGCGGCGGCGGCGACGAGGTGTCTTCGAAGATCGCAAAGCCGCTGCACCACCCTCTGGAGCACTCATGGACCTTCTGGTTCGATAGCCCCTCGGCCAAGAACTCCAAGCCCAAGCAAGAGGACTGGGGCAGCTCTATTCGCCCGATCTACACCTTCTCTACTGTTGAGGAATTCTGGGGTATATACAATAATATACGCCATCCAAGCAAGTTGTCTATGGGGACGGACCTCCATTGTTTCAAAAACAAAATTGAGCCTAAGTGGGAGGATCCTGTTTGTGCTAATGGAGGGAAATGGACTCTAACTTTTACTAAAGGGAAATCTGATCATCCCTGGCTGCATACGTTGCTAGCACTGATTGGGGAACAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAATGTCAGAACTAGGCAAGAAAAAATTGCTATTTGGACCAAGAATGCAGCAAATGAGCCTGCTCAGATGAGCATTGGAAAACAATGGAAGGGCTTTCTGGATAACAACGAAACTATAGGCTTCATATTTCATGACGATGCAAGGCGACAGGAGAGAGGTGCCAAGAATAGATACACAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

232

Amino Acids

26.22

Weight (kDa)

5.74

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 55 - 208 2.3e-57 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 166
AciI CCGC 5 cut(s) 5, 114, 117, 120, 152
AclWI GGATC 2 cut(s) 374, 387
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 696
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 352
AhdI GACNNNNNGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 3 cut(s) 32, 91, 243
AluI AGCT 3 cut(s) 32, 91, 243
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 2 cut(s) 374, 387
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 4 cut(s) 154, 240, 448, 563
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AspS9I GGNCC 3 cut(s) 180, 337, 552
AsuII TTCGAA 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 460
AvaII GGWCC 3 cut(s) 180, 337, 552
BamHI GGATCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 674
BbsI GAAGAC 2 cut(s) 18, 126
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 141, 252, 435, 575
BccI CCATC 1 cut(s) 318
BciT130I CCWGG 1 cut(s) 445
BclI TGATCA 2 cut(s) 436, 484
BfaI CTAG 2 cut(s) 461, 528
BfmI CTRYAG 1 cut(s) 630
BisI GCNGC 8 cut(s) 115, 118, 121, 152, 155, 241, 449, 564
BlsI GCNGC 8 cut(s) 116, 119, 122, 153, 156, 242, 450, 565
Bme1390I CCNGG 1 cut(s) 445
Bme18I GGWCC 3 cut(s) 180, 337, 552
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 180, 337, 552
BmiI GGNNCC 2 cut(s) 381, 676
BmrFI CCNGG 1 cut(s) 445
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 643
BmtI GCTAGC 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 2 cut(s) 18, 126
BpmI CTGGAG 1 cut(s) 188
Bpu14I TTCGAA 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 201, 443
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 201, 443
BseGI GGATG 2 cut(s) 310, 439
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 4 cut(s) 141, 252, 435, 575
BsgI GTGCAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 674
BsiHKAI GWGCWC 1 cut(s) 174
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
BspACI CCGC 5 cut(s) 5, 114, 117, 120, 152
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 592
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 381, 676
BspOI GCTAGC 1 cut(s) 464
BspPI GGATC 2 cut(s) 374, 387
BspT104I TTCGAA 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 674
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 201, 443
BssMI GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 3 cut(s) 274, 480, 694
BstAPI GCANNNNNTGC 1 cut(s) 457
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 19, 462, 576
BstDEI CTNAG 2 cut(s) 369, 579
BstF5I GGATG 2 cut(s) 310, 439
BstKTI GATC 7 cut(s) 43, 108, 144, 258, 382, 439, 487
BstMBI GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
BstMWI GCNNNNNNNGC 4 cut(s) 120, 249, 315, 457
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 4 cut(s) 141, 252, 435, 575
BstV2I GAAGAC 2 cut(s) 18, 126
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 2 cut(s) 310, 439
BtsIMutI CAGTG 2 cut(s) 464, 699
Cac8I GCNNGC 3 cut(s) 19, 462, 576
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 3 cut(s) 180, 337, 552
CseI GACGC 1 cut(s) 23
CviAII CATG 3 cut(s) 177, 488, 647
DdeI CTNAG 2 cut(s) 369, 579
DpnI GATC 7 cut(s) 42, 107, 143, 257, 381, 438, 486
DpnII GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
DraIII CACNNNGTG 1 cut(s) 696
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 130
Eco47I GGWCC 3 cut(s) 180, 337, 552
Eco57I CTGAAG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 443
FaeI CATG 3 cut(s) 180, 491, 650
FaqI GGGAC 1 cut(s) 346
FatI CATG 3 cut(s) 176, 487, 646
FbaI TGATCA 2 cut(s) 436, 484
Fnu4HI GCNGC 8 cut(s) 115, 118, 121, 152, 155, 241, 449, 564
FokI GGATG 2 cut(s) 297, 426
Fsp4HI GCNGC 8 cut(s) 115, 118, 121, 152, 155, 241, 449, 564
FspBI CTAG 2 cut(s) 461, 528
GluI GCNGC 8 cut(s) 115, 118, 121, 152, 155, 241, 449, 564
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 1 cut(s) 206
HgaI GACGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 180, 491, 650
HinfI GANTC 2 cut(s) 56, 409
Hpy188I TCNGA 5 cut(s) 37, 45, 436, 524, 582
Hpy188III TCNNGA 3 cut(s) 167, 614, 647
Hpy99I CGWCG 2 cut(s) 113, 128
HpyAV CCTTC 4 cut(s) 92, 193, 274, 598
HpyCH4III ACNGT 3 cut(s) 274, 480, 694
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 5 cut(s) 76, 157, 451, 563, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 249, 315, 457
HpyF3I CTNAG 2 cut(s) 369, 579
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 3 cut(s) 180, 491, 650
Ksp22I TGATCA 2 cut(s) 436, 484
Kzo9I GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
LmnI GCTCC 2 cut(s) 169, 506
Lsp1109I GCAGC 4 cut(s) 141, 252, 435, 575
LweI GCATC 1 cut(s) 643
MaeI CTAG 2 cut(s) 461, 528
MaeII ACGT 1 cut(s) 455
MalI GATC 7 cut(s) 42, 107, 143, 257, 381, 438, 486
MboI GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
MboII GAAGA 5 cut(s) 23, 50, 107, 126, 151
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 281, 360, 540
MlyI GAGTC 2 cut(s) 65, 403
MnlI CCTC 9 cut(s) 121, 174, 211, 223, 271, 350, 370, 392, 665
MslI CAYNNNNRTG 2 cut(s) 492, 651
MspA1I CMGCKG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 4 cut(s) 120, 249, 315, 457
NdeII GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 3 cut(s) 180, 491, 650
NlaIV GGNNCC 2 cut(s) 381, 676
NmeAIII GCCGAG 1 cut(s) 182
NspV TTCGAA 1 cut(s) 137
PagI TCATGA 1 cut(s) 646
PctI GAATGC 1 cut(s) 565
PflFI GACNNNGTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 8 cut(s) 116, 119, 122, 153, 156, 242, 450, 565
PleI GAGTC 2 cut(s) 64, 403
PpsI GAGTC 2 cut(s) 64, 403
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 381, 676
PspPI GGNCC 3 cut(s) 180, 337, 552
PsuI RGATCY 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 492, 651
SatI GCNGC 8 cut(s) 115, 118, 121, 152, 155, 241, 449, 564
Sau3AI GATC 7 cut(s) 40, 105, 141, 255, 379, 436, 484
Sau96I GGNCC 3 cut(s) 180, 337, 552
SchI GAGTC 2 cut(s) 65, 403
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 174
SetI ASST 9 cut(s) 34, 93, 132, 185, 245, 266, 342, 458, 676
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 3 cut(s) 180, 337, 552
SmiMI CAYNNNNRTG 2 cut(s) 492, 651
Sse9I AATT 3 cut(s) 281, 360, 540
SsiI CCGC 5 cut(s) 5, 114, 117, 120, 152
SspMI CTAG 2 cut(s) 461, 528
StyD4I CCNGG 1 cut(s) 443
TaaI ACNGT 3 cut(s) 274, 480, 694
TaiI ACGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 59, 137, 192
TasI AATT 3 cut(s) 281, 360, 540
TauI GCSGC 4 cut(s) 117, 120, 123, 154
TscAI CASTG 2 cut(s) 471, 699
TseI GCWGC 4 cut(s) 154, 240, 448, 563
TspDTI ATGAA 3 cut(s) 510, 628, 635
TspGWI ACGGA 2 cut(s) 68, 350
TspRI CASTG 2 cut(s) 471, 699
Tth111I GACNNNGTC 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 3 cut(s) 180, 337, 552
XapI RAATTY 1 cut(s) 281
XspI CTAG 2 cut(s) 461, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.