Rmu_sc0001152.1_g000033

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001152.1
OG0000111
Physical Location & Seq
Reverse (-)
129035 .. 131927
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001152.1_g000033.1.cds

Sequence Viewer

Length: 912 bp
atgccctcagacatcggccaaaaaccgatgagaaaaagaatcccgaccgatgtcttagtgggtgacgagaaaggttcggaaaatccagacatcgatgaatttctcaatcttgatgatattgataatgttggtggtggtggtggtgagaatcttgaattgttagtctctgaagtcgatagagtcggagatgttttggggaaatccaaggtagtacctgagtttcgaatacttggttcatgtagaagaacttatgggaagctatatggatttggctttgatccgtccacccaagattacaagatggtttatgggatttgtagggttcactctacatttgaacttgaacttgaacttgggtttagcgtctattcattgaaaaccggttcttggccagtgattgagaagggatatccctatcaaagtttacaccatagtagacaggggagactgctgaatggaggtattcattggttgatttatagagactatagagatgcgtcatctatggttctgtcatcttttattttagcagagggggaagtgcgagagattccactaccgcctcgtttcagtatggaatcggaagatgtttatttaagtgtcttcggagaatgcctatgtatgagactgcggtataatgaagagctttgggtcatgaaggaatatgaagtgagagagtcttggactaaaataaggatttgcatcccgccttgtcagtggttacagtcgggattcaggaagaaaatttatgatctattgctgtttgtagatgccgaagacgagttggttctgctcaattttgatgaggacacctttcgcaatatatcaattcgtggagttccggaagttggttatggtgtggtctacttggagagccttgtttcacccaattactttggcatcattgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

303

Amino Acids

34.72

Weight (kDa)

4.83

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 436, 864
AccIII TCCGGA 1 cut(s) 841
AciI CCGC 3 cut(s) 560, 631, 707
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 2 cut(s) 16, 389
AcsI RAATTY 2 cut(s) 98, 744
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 387, 848
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 5 cut(s) 155, 338, 344, 350, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 2 cut(s) 259, 646
AluI AGCT 2 cut(s) 259, 646
Alw26I GTCTC 4 cut(s) 169, 439, 477, 619
AlwI GGATC 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 841
AoxI GGCC 2 cut(s) 16, 389
ApoI RAATTY 2 cut(s) 98, 744
AsiGI ACCGGT 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 74, 155, 876
AsuII TTCGAA 1 cut(s) 223
BalI TGGCCA 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 595, 783
BccI CCATC 1 cut(s) 295
BcoDI GTCTC 4 cut(s) 169, 439, 477, 619
BfmI CTRYAG 1 cut(s) 487
BmsI GCATC 3 cut(s) 484, 711, 760
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 595, 783
Bpu14I TTCGAA 1 cut(s) 223
Bsa29I ATCGAT 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 701
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 2 cut(s) 380, 841
Bsc4I CCNNNNNNNGG 2 cut(s) 387, 848
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 392
Bse8I GATNNNNATC 1 cut(s) 701
BseAI TCCGGA 1 cut(s) 841
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 702
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 2 cut(s) 387, 848
BseMII CTCAG 2 cut(s) 21, 207
BseNI ACTGG 1 cut(s) 392
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 18, 391
BshTI ACCGGT 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 381, 842
BslI CCNNNNNNNGG 2 cut(s) 387, 848
BsmAI GTCTC 4 cut(s) 169, 439, 477, 619
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 2 cut(s) 18, 391
Bsp119I TTCGAA 1 cut(s) 223
Bsp13I TCCGGA 1 cut(s) 841
Bsp143I GATC 2 cut(s) 277, 751
BspACI CCGC 3 cut(s) 560, 631, 707
BspANI GGCC 2 cut(s) 18, 391
BspCNI CTCAG 2 cut(s) 20, 208
BspDI ATCGAT 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 841
BspHI TCATGA 1 cut(s) 654
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 636
BspT104I TTCGAA 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 277, 751
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 726
Bst6I CTCTTC 1 cut(s) 636
BstBI TTCGAA 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 7, 55, 216
BstF5I GGATG 1 cut(s) 702
BstKTI GATC 2 cut(s) 280, 754
BstMAI GTCTC 4 cut(s) 169, 439, 477, 619
BstMBI GATC 2 cut(s) 277, 751
BstMCI CGRYCG 1 cut(s) 48
BstPAI GACNNNNGTC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 487
BstV2I GAAGAC 2 cut(s) 595, 783
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 2 cut(s) 18, 391
BsuTUI ATCGAT 1 cut(s) 93
BtsCI GGATG 1 cut(s) 702
BtsIMutI CAGTG 2 cut(s) 399, 722
CciI TCATGA 1 cut(s) 654
Cfr10I RCCGGY 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 2 cut(s) 352, 486
Csp6I GTAC 1 cut(s) 212
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 2 cut(s) 237, 655
CviJI RGCY 6 cut(s) 18, 259, 273, 391, 646, 876
CviKI_1 RGCY 6 cut(s) 18, 259, 273, 391, 646, 876
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 3 cut(s) 7, 55, 216
DpnI GATC 2 cut(s) 279, 753
DpnII GATC 2 cut(s) 277, 751
EaeI YGGCCR 2 cut(s) 16, 389
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 204
Eco32I GATATC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 189
EcoRV GATATC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 240, 658
FatI CATG 2 cut(s) 236, 654
FauI CCCGC 1 cut(s) 714
FblI GTMKAC 2 cut(s) 436, 864
FokI GGATG 1 cut(s) 689
HaeIII GGCC 2 cut(s) 18, 391
HapII CCGG 2 cut(s) 381, 842
HgaI GACGC 2 cut(s) 352, 486
Hin1II CATG 2 cut(s) 240, 658
HinfI GANTC 7 cut(s) 39, 148, 180, 550, 578, 677, 732
HpaII CCGG 2 cut(s) 381, 842
HphI GGTGA 3 cut(s) 74, 155, 876
Hpy166II GTNNAC 5 cut(s) 285, 325, 425, 437, 865
Hpy188I TCNGA 6 cut(s) 10, 79, 169, 185, 583, 608
Hpy188III TCNNGA 8 cut(s) 43, 86, 110, 152, 655, 729, 736, 842
Hpy8I GTNNAC 5 cut(s) 285, 325, 425, 437, 865
HpyAV CCTTC 2 cut(s) 397, 652
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4V TGCA 1 cut(s) 702
HpyF3I CTNAG 3 cut(s) 7, 55, 216
Hsp92II CATG 2 cut(s) 240, 658
Kpn2I TCCGGA 1 cut(s) 841
Kzo9I GATC 2 cut(s) 277, 751
LguI GCTCTTC 1 cut(s) 636
LpnPI CCDG 7 cut(s) 99, 228, 394, 405, 425, 721, 855
LweI GCATC 3 cut(s) 484, 711, 760
MaeIII GTNAC 2 cut(s) 62, 720
MalI GATC 2 cut(s) 279, 753
MboI GATC 2 cut(s) 277, 751
MboII GAAGA 6 cut(s) 255, 595, 596, 653, 751, 788
MlsI TGGCCA 1 cut(s) 391
MluCI AATT 6 cut(s) 98, 155, 744, 796, 828, 889
MluNI TGGCCA 1 cut(s) 391
MlyI GAGTC 2 cut(s) 189, 686
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 16, 452, 526, 573, 799
Mox20I TGGCCA 1 cut(s) 391
MroI TCCGGA 1 cut(s) 841
MscI TGGCCA 1 cut(s) 391
MseI TTAA 1 cut(s) 596
Msp20I TGGCCA 1 cut(s) 391
MspI CCGG 2 cut(s) 381, 842
Mva1269I GAATGC 1 cut(s) 617
NdeII GATC 2 cut(s) 277, 751
NlaIII CATG 2 cut(s) 240, 658
NmuCI GTSAC 1 cut(s) 62
NspV TTCGAA 1 cut(s) 223
PagI TCATGA 1 cut(s) 654
PciSI GCTCTTC 1 cut(s) 636
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 5 cut(s) 39, 148, 550, 578, 732
PinAI ACCGGT 1 cut(s) 380
PleI GAGTC 2 cut(s) 188, 685
PpsI GAGTC 2 cut(s) 188, 685
PshAI GACNNNNGTC 1 cut(s) 50
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 1 cut(s) 596
Sau3AI GATC 2 cut(s) 277, 751
SchI GAGTC 2 cut(s) 189, 686
SetI ASST 7 cut(s) 76, 210, 217, 261, 463, 648, 815
SfaNI GCATC 3 cut(s) 484, 711, 760
SfcI CTRYAG 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 223
Sse9I AATT 6 cut(s) 98, 155, 744, 796, 828, 889
SsiI CCGC 3 cut(s) 560, 631, 707
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 726
TaqI TCGA 3 cut(s) 93, 174, 223
TaqII GACCGA 1 cut(s) 62
TasI AATT 6 cut(s) 98, 155, 744, 796, 828, 889
TfiI GAWTC 5 cut(s) 39, 148, 550, 578, 732
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 2 cut(s) 399, 722
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 7 cut(s) 111, 225, 360, 455, 654, 671, 681
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 2 cut(s) 399, 722
XapI RAATTY 2 cut(s) 98, 744
XmiI GTMKAC 2 cut(s) 436, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.