FvH4_7g28012

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000111
Physical Location & Seq
Reverse (-)
20817790 .. 20819518
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28012.t1

Sequence Viewer

Length: 411 bp
ATGGAAGATCGTCCTATAAAGAAGAAGAAGACAGAAGTCCACGGTGGCCAAAACGTCGAGCTTCCACCCGAGATTATAGATGCGATCCTTTTAAGGTTACCAGTTAAGCCCTTGTGTCGCTTCAAGCTTGTATCCAAGTCATGGCAGTCCCTAATCTCCCATCCTGATTTCGTCGCAAACCATTCCAAAGCCGCCGTTGAGAATAAGGACAGACGGCGCCTGTTTATCAATATTTTATCGTACTCATCGCCATTTCGGCTATACTCTTTAAATTTCGACCAGTTTCACGGTGATGGTAATTTAGTAGCAGCATCCACTGAGCTTGATTTCTGGGCTCCCTCTGATGGCTGTCCAAAAGGATCTGATGTTAAACAGATGGGTGTTGAGAGTAATTTGGTTGATAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

8.57

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 57 9.2e-10 F-box domain
F-box-like PF12937 20 - 55 2.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 141
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 79, 367
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 141, 344
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 3 cut(s) 61, 127, 322
AluI AGCT 3 cut(s) 61, 127, 322
AlwI GGATC 2 cut(s) 79, 367
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 68
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 320
BccI CCATC 4 cut(s) 168, 287, 338, 370
BceAI ACGGC 2 cut(s) 179, 230
BciVI GTATCC 1 cut(s) 142
BfoI RGCGCY 1 cut(s) 220
BfuI GTATCC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 256
BisI GCNGC 2 cut(s) 192, 309
BlsI GCNGC 2 cut(s) 193, 310
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 218, 336
BmsI GCATC 2 cut(s) 70, 320
BoxI GACNNNNGTC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 344
Bse1I ACTGG 2 cut(s) 101, 280
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 160, 311
BseLI CCNNNNNNNGG 2 cut(s) 141, 344
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 101, 280
BseXI GCAGC 1 cut(s) 320
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 141, 344
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 3 cut(s) 7, 84, 359
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 218, 336
BspPI GGATC 2 cut(s) 79, 367
BspT107I GGYRCC 1 cut(s) 216
BsrI ACTGG 2 cut(s) 101, 280
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 3 cut(s) 7, 84, 359
BssNI GRCGYC 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 44, 290
BstACI GRCGYC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 318, 408
BstDSI CCRYGG 1 cut(s) 40
BstEII GGTNACC 1 cut(s) 96
BstF5I GGATG 2 cut(s) 160, 311
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 10, 87, 362
BstMBI GATC 3 cut(s) 7, 84, 359
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 2 cut(s) 160, 311
BtsIMutI CAGTG 1 cut(s) 315
CfoI GCGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 241
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 1 cut(s) 141
CviJI RGCY 9 cut(s) 48, 61, 109, 127, 191, 259, 322, 335, 348
CviKI_1 RGCY 9 cut(s) 48, 61, 109, 127, 191, 259, 322, 335, 348
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 318, 408
DinI GGCGCC 1 cut(s) 218
DpnI GATC 3 cut(s) 9, 86, 361
DpnII GATC 3 cut(s) 7, 84, 359
DraI TTTAAA 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 337
Eco88I CYCGRG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 96
EcoO65I GGTNACC 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 218
EheI GGCGCC 1 cut(s) 218
FaeI CATG 1 cut(s) 144
FaiI YATR 4 cut(s) 17, 77, 142, 262
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 192, 309
FokI GGATG 2 cut(s) 147, 298
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 192, 309
GlaI GCGC 1 cut(s) 218
GluI GCNGC 2 cut(s) 192, 309
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 1 cut(s) 48
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 125
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 343, 364
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 59, 176
HpyCH4III ACNGT 2 cut(s) 44, 290
HpyCH4IV ACGT 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 318, 408
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 1 cut(s) 217
KasI GGCGCC 1 cut(s) 216
Kzo9I GATC 3 cut(s) 7, 84, 359
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 5 cut(s) 114, 177, 233, 293, 316
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 2 cut(s) 70, 320
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 96
MalI GATC 3 cut(s) 9, 86, 361
MboI GATC 3 cut(s) 7, 84, 359
MboII GAAGA 4 cut(s) 17, 34, 37, 40
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 3 cut(s) 271, 298, 391
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 217
MnlI CCTC 1 cut(s) 349
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 4 cut(s) 92, 105, 269, 369
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 256
NarI GGCGCC 1 cut(s) 217
NdeII GATC 3 cut(s) 7, 84, 359
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 2 cut(s) 218, 336
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 193, 310
PluTI GGCGCC 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 35
PspEI GGTNACC 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 218, 336
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 4 cut(s) 92, 105, 269, 369
SatI GCNGC 2 cut(s) 192, 309
Sau3AI GATC 3 cut(s) 7, 84, 359
SduI GDGCHC 1 cut(s) 337
SetI ASST 6 cut(s) 57, 63, 98, 129, 324, 409
SfaNI GCATC 2 cut(s) 70, 320
SfoI GGCGCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 3 cut(s) 271, 298, 391
SsiI CCGC 1 cut(s) 192
SspDI GGCGCC 1 cut(s) 216
SspI AATATT 1 cut(s) 232
TaaI ACNGT 2 cut(s) 44, 290
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 57, 276
TasI AATT 3 cut(s) 271, 298, 391
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 4 cut(s) 92, 105, 269, 369
Tru9I TTAA 4 cut(s) 92, 105, 269, 369
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 308
TspRI CASTG 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.