FvH4_6g16940

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000111
Physical Location & Seq
Forward (+)
10809723 .. 10810418
696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16940.t1

Sequence Viewer

Length: 696 bp
ATGGACGACCAAAACAAGGATGAAGCCATTGAAGTGATTGAAGAAAAGGGACAGCGTCTTATGTTTACTGACAAAGCACGTAAACGCATCTACTCTGTGAAGCTTGTTCAGTTCCTCAACTATATTCCTGGACCTTATTCGGAGGAGCTCGATTTTGTTCGTAGCAGTATAGGAAGTGCTTGGGCTCCCGTTGTCCTTTCCTGCAAAAACATTCTGATGTGCAGGTTAGATTCTAGGTTCCATTTGGTTAACCCTTTAACCAAGGAAATGAAGAAAGTACCAAATTCACCACAAACAAAGAAGTCTTATTCTTGGGAGGTACATGGGTTTGGATTTGATGACTCCACTAATCAATACAAGGTGGTTGAAGCGAAGGGATGCACAGATGGACTTGTGTTTAGTGTCTATGAATCTCTGACTGATTCTTGGAGAAAGATCAAGGGCATGTTTCCGTACAAAGAACCTCGTCTTTGCAAGAAGAGTGGCACGGTACTGAATGGGGGTGTTCATTGGTTCGTCAAGCGAGATGAATCCTTGGTGATTATATGTTTCCGCTTAGCAGAGGAAGAGGTTACAGAAATCCAAGTACCACCAAATTGGAACAATCAAACAGTAGAACTGGGCCTCTTCAGAGATAGCTATGTATTACATCAATCTCAGTATCAGGAGAATTATGCAGTGAGACGTTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

232

Amino Acids

26.81

Weight (kDa)

8.18

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 63 - 201 1.8e-11 F-box associated beta propeller domain
FBA_1 PF07734 65 - 213 1.9e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
AciI CCGC 1 cut(s) 553
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 613
AfaI GTAC 5 cut(s) 279, 321, 455, 492, 588
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 32, 41, 368
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 3 cut(s) 103, 148, 639
AluI AGCT 3 cut(s) 103, 148, 639
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 676
AoxI GGCC 1 cut(s) 622
ApoI RAATTY 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 131, 622
AsuHPI GGTGA 2 cut(s) 279, 550
AvaII GGWCC 1 cut(s) 131
BaeI ACNNNNGTAYC 2 cut(s) 311, 344
BanII GRGCYC 2 cut(s) 150, 187
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 213
BlpI GCTNAGC 1 cut(s) 556
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 131, 622
BmiI GGNNCC 2 cut(s) 186, 239
BmrFI CCNGG 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 2 cut(s) 96, 368
BmuI ACTGGG 1 cut(s) 629
Bpu1102I GCTNAGC 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 261, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 261, 534
BseGI GGATG 2 cut(s) 25, 383
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 624
BseRI GAGGAG 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 241
BshFI GGCC 1 cut(s) 624
BsiHKAI GWGCWC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 676
BsmBI CGTCTC 1 cut(s) 676
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 624
Bsp1286I GDGCHC 2 cut(s) 150, 187
Bsp143I GATC 1 cut(s) 435
Bsp1720I GCTNAGC 1 cut(s) 556
BspACI CCGC 1 cut(s) 553
BspANI GGCC 1 cut(s) 624
BspCNI CTCAG 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 186, 239
BspMI ACCTGC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 624
BssECI CCNNGG 2 cut(s) 261, 534
BssMI GATC 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 261, 534
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 490, 613
Bst6I CTCTTC 3 cut(s) 473, 561, 632
BstBAI YACGTR 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 556, 657
BstF5I GGATG 2 cut(s) 25, 383
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 597
BsuRI GGCC 1 cut(s) 624
BtsCI GGATG 2 cut(s) 25, 383
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 684
BveI ACCTGC 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 131, 622
CseI GACGC 1 cut(s) 44
Csp6I GTAC 5 cut(s) 278, 320, 454, 491, 587
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviAII CATG 2 cut(s) 323, 445
CviJI RGCY 6 cut(s) 26, 103, 148, 185, 624, 639
CviKI_1 RGCY 6 cut(s) 26, 103, 148, 185, 624, 639
CviQI GTAC 5 cut(s) 278, 320, 454, 491, 587
DdeI CTNAG 2 cut(s) 556, 657
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 473, 561, 632
EarI CTCTTC 3 cut(s) 473, 561, 632
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 261, 534
Eco24I GRGCYC 2 cut(s) 150, 187
Eco47I GGWCC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 613
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 2 cut(s) 261, 534
EcoT38I GRGCYC 2 cut(s) 150, 187
ErhI CCWWGG 2 cut(s) 261, 534
Esp3I CGTCTC 1 cut(s) 676
FaeI CATG 2 cut(s) 326, 448
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 322, 444
FokI GGATG 2 cut(s) 32, 390
FriOI GRGCYC 2 cut(s) 150, 187
FspBI CTAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 624
HgaI GACGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 326, 448
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 5 cut(s) 230, 341, 410, 422, 530
HpaI GTTAAC 1 cut(s) 250
HphI GGTGA 2 cut(s) 279, 550
Hpy166II GTNNAC 3 cut(s) 66, 83, 250
Hpy188I TCNGA 4 cut(s) 142, 216, 417, 632
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 3 cut(s) 66, 83, 250
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 2 cut(s) 490, 613
HpyCH4IV ACGT 2 cut(s) 79, 685
HpyCH4V TGCA 5 cut(s) 204, 222, 381, 474, 677
HpyF3I CTNAG 2 cut(s) 556, 657
HpySE526I ACGT 2 cut(s) 79, 685
Hsp92II CATG 2 cut(s) 326, 448
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 2 cut(s) 145, 190
LpnPI CCDG 6 cut(s) 114, 141, 208, 214, 605, 650
LweI GCATC 2 cut(s) 96, 368
MaeI CTAG 1 cut(s) 234
MaeII ACGT 2 cut(s) 79, 685
MaeIII GTNAC 1 cut(s) 571
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 5 cut(s) 53, 283, 490, 578, 619
MhlI GDGCHC 2 cut(s) 150, 187
MluCI AATT 3 cut(s) 283, 595, 670
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 7 cut(s) 125, 136, 310, 474, 556, 562, 635
MseI TTAA 2 cut(s) 249, 257
MslI CAYNNNNRTG 2 cut(s) 32, 215
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
NdeII GATC 1 cut(s) 435
NlaIII CATG 2 cut(s) 326, 448
NlaIV GGNNCC 2 cut(s) 186, 239
NspI RCATGY 1 cut(s) 448
PfeI GAWTC 4 cut(s) 230, 410, 422, 530
PflFI GACNNNGTC 1 cut(s) 54
PfoI TCCNGGA 1 cut(s) 127
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 186, 239
PspPI GGNCC 2 cut(s) 131, 622
PsyI GACNNNGTC 1 cut(s) 54
RsaI GTAC 5 cut(s) 279, 321, 455, 492, 588
RsaNI GTAC 5 cut(s) 278, 320, 454, 491, 587
RseI CAYNNNNRTG 2 cut(s) 32, 215
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 249, 257
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 2 cut(s) 131, 622
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 150, 187
SfaNI GCATC 2 cut(s) 96, 368
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 32, 215
Sse9I AATT 3 cut(s) 283, 595, 670
SsiI CCGC 1 cut(s) 553
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 2 cut(s) 261, 534
TaaI ACNGT 2 cut(s) 490, 613
TaiI ACGT 2 cut(s) 82, 688
TaqI TCGA 1 cut(s) 150
TasI AATT 3 cut(s) 283, 595, 670
TfiI GAWTC 4 cut(s) 230, 410, 422, 530
Tru1I TTAA 2 cut(s) 249, 257
Tru9I TTAA 2 cut(s) 249, 257
TscAI CASTG 1 cut(s) 684
TspDTI ATGAA 5 cut(s) 36, 284, 423, 497, 543
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 684
Tth111I GACNNNGTC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 448
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.