Rroxscaffold_2G00150570

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000111
Physical Location & Seq
Reverse (-)
87945210 .. 87947028
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150570.1

Sequence Viewer

Length: 609 bp
ATGGCTTGTTCTTGTCCCGGATATATATGTTGTGGCAACTTCAGTTTCAGTTTGATCAACCCTGTAACCAAGGAATCAAAGAAACTACCAAAGACACCAATATGGAGACTACCAATGAAGCCCTTATTTCGTGGCTTGAGCTTAAATGGGCTTGCATTCGATTACTCCACCATTGTATACAAGGTGGTTAACAGGCAAAATTATGATGATGGATCTGTGTTTAGTGTCTATTCATTGCAGACTGATTCTTGGCGACAGATTGACTGCTTATTTCCCTACAAAGCTTTAGATTTTGATGGGATCGTGGTGAATGGTGCTGTTCATTGGTTGGTTAGGAAGGTTGCAGATCGATCATTAGTGATTATATCTTTCCTTTTAGCAGAGGAGGAGGTTAGAGAAATTCCACCACCGCCCATTCCCAGTACTTGTTCAAGTCAACTAGGAGTATTCAGAAATTGGCTATGTATAACATTAGCATTAACATGGACTGAAGAAATAGCACGTACAAATAATGAGTTTTGGGTCATGAAGGAATATGGAGTGACAGAGTCTTGGACAAAAATGCAAGTCTCCAAACCATATAAGGAATTATCACATTCCAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

202

Amino Acids

23.11

Weight (kDa)

8.12

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 6 - 194 1.8e-12 F-box associated beta propeller domain
FBA_1 PF07734 13 - 190 3.4e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AciI CCGC 1 cut(s) 410
AclWI GGATC 2 cut(s) 220, 308
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 25, 510
AfaI GTAC 2 cut(s) 424, 505
AgsI TTSAA 1 cut(s) 432
AluBI AGCT 2 cut(s) 141, 284
AluI AGCT 2 cut(s) 141, 284
Alw26I GTCTC 2 cut(s) 100, 574
AlwI GGATC 2 cut(s) 220, 308
ApoI RAATTY 1 cut(s) 399
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 319
BccI CCATC 2 cut(s) 203, 290
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 100, 574
BfaI CTAG 2 cut(s) 440, 607
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 349
BsaAI YACGTR 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 420, 600
Bse3DI GCAATG 1 cut(s) 233
BseCI ATCGAT 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 233
BseNI ACTGG 2 cut(s) 420, 600
BseRI GAGGAG 2 cut(s) 398, 401
BshVI ATCGAT 1 cut(s) 349
BsiSI CCGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 100, 574
BsmI GAATGC 1 cut(s) 155
Bsp143I GATC 5 cut(s) 54, 212, 300, 346, 350
BspACI CCGC 1 cut(s) 410
BspDI ATCGAT 1 cut(s) 349
BspHI TCATGA 1 cut(s) 525
BspPI GGATC 2 cut(s) 220, 308
BsrDI GCAATG 1 cut(s) 233
BsrI ACTGG 2 cut(s) 420, 600
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 5 cut(s) 54, 212, 300, 346, 350
BssNAI GTATAC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 153
BstKTI GATC 5 cut(s) 57, 215, 303, 349, 353
BstMAI GTCTC 2 cut(s) 100, 574
BstMBI GATC 5 cut(s) 54, 212, 300, 346, 350
BstSCI CCNGG 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BstZ17I GTATAC 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 349
BsuTUI ATCGAT 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 1 cut(s) 525
ClaI ATCGAT 1 cut(s) 349
Csp6I GTAC 2 cut(s) 423, 504
CviAII CATG 2 cut(s) 483, 526
CviJI RGCY 7 cut(s) 5, 121, 135, 141, 151, 284, 460
CviKI_1 RGCY 7 cut(s) 5, 121, 135, 141, 151, 284, 460
CviQI GTAC 2 cut(s) 423, 504
DpnI GATC 5 cut(s) 56, 214, 302, 348, 352
DpnII GATC 5 cut(s) 54, 212, 300, 346, 350
Eco130I CCWWGG 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 25, 510
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 486, 529
FatI CATG 2 cut(s) 482, 525
FbaI TGATCA 1 cut(s) 54
FblI GTMKAC 1 cut(s) 177
FspBI CTAG 2 cut(s) 440, 607
HapII CCGG 1 cut(s) 18
Hin1II CATG 2 cut(s) 486, 529
HincII GTYRAC 2 cut(s) 190, 437
HindII GTYRAC 2 cut(s) 190, 437
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 3 cut(s) 74, 245, 548
HpaI GTTAAC 1 cut(s) 190
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 3 cut(s) 178, 190, 437
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 1 cut(s) 526
Hpy8I GTNNAC 3 cut(s) 178, 190, 437
HpyAV CCTTC 2 cut(s) 331, 523
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 4 cut(s) 155, 238, 344, 565
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 2 cut(s) 486, 529
Ksp22I TGATCA 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 5 cut(s) 54, 212, 300, 346, 350
LpnPI CCDG 4 cut(s) 31, 75, 178, 433
MaeI CTAG 2 cut(s) 440, 607
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 64, 541
MalI GATC 5 cut(s) 56, 214, 302, 348, 352
MboI GATC 5 cut(s) 54, 212, 300, 346, 350
MboII GAAGA 1 cut(s) 503
MflI RGATCY 1 cut(s) 212
MluCI AATT 4 cut(s) 199, 399, 454, 587
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 3 cut(s) 376, 379, 382
MseI TTAA 3 cut(s) 143, 189, 479
MslI CAYNNNNRTG 2 cut(s) 100, 481
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 18
NdeII GATC 5 cut(s) 54, 212, 300, 346, 350
NlaIII CATG 2 cut(s) 486, 529
NmuCI GTSAC 1 cut(s) 541
PagI TCATGA 1 cut(s) 525
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 74, 245
PflFI GACNNNGTC 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 16
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 503
PsuI RGATCY 1 cut(s) 212
PsyI GACNNNGTC 1 cut(s) 547
RsaI GTAC 2 cut(s) 424, 505
RsaNI GTAC 2 cut(s) 423, 504
RseI CAYNNNNRTG 2 cut(s) 100, 481
SaqAI TTAA 3 cut(s) 143, 189, 479
Sau3AI GATC 5 cut(s) 54, 212, 300, 346, 350
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 18
SetI ASST 6 cut(s) 143, 186, 286, 342, 393, 505
SmiMI CAYNNNNRTG 2 cut(s) 100, 481
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 4 cut(s) 199, 399, 454, 587
SsiI CCGC 1 cut(s) 410
SspMI CTAG 2 cut(s) 440, 607
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 159, 349
TasI AATT 4 cut(s) 199, 399, 454, 587
TatI WGTACW 1 cut(s) 422
TfiI GAWTC 2 cut(s) 74, 245
Tru1I TTAA 3 cut(s) 143, 189, 479
Tru9I TTAA 3 cut(s) 143, 189, 479
TseFI GTSAC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 4 cut(s) 131, 222, 311, 542
Tth111I GACNNNGTC 1 cut(s) 547
XapI RAATTY 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 440, 607
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.