FvH4_1g05420

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000111
Physical Location & Seq
Forward (+)
2867948 .. 2868625
678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05420.t1

Sequence Viewer

Length: 678 bp
ATGGAAGTTGGTTCTGAAAAACAGAAGACAGAAGACGGTGGACAAAATGTCGACCTTCCACCCGAGATAATAGATGCGATTCTTTCAAGGTTACCAGTGAAGTCCTTGTGCCGGTTCAAGCTTGTATCCAAGTCCTGGCAGTCCCTAATCTCCGATCTTGATTTCGTCGCAAACTATTCCAAAGCCACCATTGAGAATATGGATGTCTTGTTTAGAAGACGGCCCCTCCTCTTTACTTTAATGGACTCGGAACCAAGCCAAGGGATGTACTCATTGGATCTTGACCAGTTTCTCAATGAGAATCCTAATGCTGGTGTTGATGGTCTAGTAGCAACACCCTCTGAGCTCGACTTTGTTTACAATCATCTTCCAAATGGTATAGATTGGTTTCCCTTTGCCCTATATTCCTGCCATGGATTGTTCCTGTCACATTTATGGTCTGGCGACTTCAGCGTCAATTTGATCGACCCTCTAACCAAGGAATCAAAGACAATACCAGAGCCACCAAAATGGAGGCTTGGATTTGGATTTGGTCGGTACTTACATGGATTTGGATTTGATCACTCGATCAATGAATACAAGGTGATTAATGGGCAGCATTATGATGATGGAGTTATGTTTAGTGTCTATACATTGCAGATTGGTTCTTGGCGACAGATTGACTGCTTATTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

226

Amino Acids

25.61

Weight (kDa)

4.87

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 55 1.6e-11 F-box domain
F-box-like PF12937 18 - 52 1.5e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 135
AccI GTMKAC 1 cut(s) 51
AclWI GGATC 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 433
AfaI GTAC 2 cut(s) 269, 539
AfiI CCNNNNNNNGG 4 cut(s) 111, 135, 260, 311
AgsI TTSAA 2 cut(s) 87, 118
AhdI GACNNNNNGTC 1 cut(s) 47
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 121, 346
AluI AGCT 2 cut(s) 121, 346
Alw21I GWGCWC 1 cut(s) 348
AlwI GGATC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 595
AseI ATTAAT 1 cut(s) 588
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 595
AvaI CYCGRG 1 cut(s) 62
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 3 cut(s) 32, 39, 223
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 607
BccI CCATC 2 cut(s) 314, 602
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 136
BciVI GTATCC 1 cut(s) 136
BclI TGATCA 1 cut(s) 559
BfaI CTAG 1 cut(s) 326
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 597
Bme1390I CCNGG 1 cut(s) 136
BmeRI GACNNNNNGTC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 224, 252
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 3 cut(s) 32, 39, 223
BsaJI CCNNGG 3 cut(s) 259, 412, 477
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 135, 260, 311
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 95, 286
Bse3DI GCAATG 1 cut(s) 632
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 259, 412, 477
BseGI GGATG 2 cut(s) 208, 270
BseLI CCNNNNNNNGG 4 cut(s) 111, 135, 260, 311
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 95, 286
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 607
BshFI GGCC 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 4 cut(s) 111, 135, 260, 311
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 5 cut(s) 154, 277, 462, 559, 567
Bsp19I CCATGG 1 cut(s) 412
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 224, 252
BspPI GGATC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 632
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 2 cut(s) 95, 286
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 259, 412, 477
BssMI GATC 5 cut(s) 154, 277, 462, 559, 567
BssT1I CCWWGG 3 cut(s) 259, 412, 477
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 412
BstEII GGTNACC 1 cut(s) 90
BstF5I GGATG 2 cut(s) 208, 270
BstKTI GATC 5 cut(s) 157, 280, 465, 562, 570
BstMBI GATC 5 cut(s) 154, 277, 462, 559, 567
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 607
BstV2I GAAGAC 3 cut(s) 32, 39, 223
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 510
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 2 cut(s) 208, 270
BtsIMutI CAGTG 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 442
Csp6I GTAC 2 cut(s) 268, 538
CviAII CATG 2 cut(s) 413, 545
CviJI RGCY 7 cut(s) 121, 185, 223, 258, 346, 502, 517
CviKI_1 RGCY 7 cut(s) 121, 185, 223, 258, 346, 502, 517
CviQI GTAC 2 cut(s) 268, 538
DdeI CTNAG 1 cut(s) 342
DpnI GATC 5 cut(s) 156, 279, 464, 561, 569
DpnII GATC 5 cut(s) 154, 277, 462, 559, 567
DrdI GACNNNNNNGTC 1 cut(s) 452
DriI GACNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 452
Eam1105I GACNNNNNGTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 3 cut(s) 259, 412, 477
Eco24I GRGCYC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 3 cut(s) 259, 412, 477
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 3 cut(s) 259, 412, 477
FaeI CATG 2 cut(s) 416, 548
FaiI YATR 9 cut(s) 200, 380, 403, 414, 436, 546, 603, 617, 630
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 412, 544
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 596
FokI GGATG 2 cut(s) 215, 277
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 596
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 596
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 112
HgaI GACGC 1 cut(s) 442
Hin1II CATG 2 cut(s) 416, 548
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 4 cut(s) 79, 245, 301, 482
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 3 cut(s) 41, 52, 358
Hpy188I TCNGA 4 cut(s) 16, 154, 250, 343
Hpy188III TCNNGA 2 cut(s) 158, 281
Hpy8I GTNNAC 3 cut(s) 41, 52, 358
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 2 cut(s) 416, 548
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 5 cut(s) 154, 277, 462, 559, 567
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 90, 426
MalI GATC 5 cut(s) 156, 279, 464, 561, 569
MboI GATC 5 cut(s) 154, 277, 462, 559, 567
MboII GAAGA 4 cut(s) 37, 44, 228, 359
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 457
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 5 cut(s) 236, 239, 349, 480, 507
MseI TTAA 2 cut(s) 239, 588
MslI CAYNNNNRTG 3 cut(s) 433, 508, 603
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 450
NcoI CCATGG 1 cut(s) 412
NdeII GATC 5 cut(s) 154, 277, 462, 559, 567
NlaIII CATG 2 cut(s) 416, 548
NlaIV GGNNCC 2 cut(s) 224, 252
NmuCI GTSAC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 79, 301, 482
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 1 cut(s) 597
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 224, 252
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 269, 539
RsaNI GTAC 2 cut(s) 268, 538
RseI CAYNNNNRTG 3 cut(s) 433, 508, 603
SacI GAGCTC 1 cut(s) 348
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 239, 588
SatI GCNGC 1 cut(s) 596
Sau3AI GATC 5 cut(s) 154, 277, 462, 559, 567
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 348
SetI ASST 5 cut(s) 57, 92, 123, 348, 585
SfaNI GCATC 1 cut(s) 64
SmiMI CAYNNNNRTG 3 cut(s) 433, 508, 603
Sse9I AATT 1 cut(s) 457
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 3 cut(s) 259, 412, 477
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 4 cut(s) 51, 348, 465, 566
TasI AATT 1 cut(s) 457
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 3 cut(s) 79, 301, 482
Tru1I TTAA 2 cut(s) 239, 588
Tru9I TTAA 2 cut(s) 239, 588
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 1 cut(s) 595
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 1 cut(s) 588
TspRI CASTG 1 cut(s) 102
Van91I CCANNNNNTGG 1 cut(s) 135
VspI ATTAAT 1 cut(s) 588
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.