FvH4_3g39980

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000111
Physical Location & Seq
Reverse (-)
33847255 .. 33850160
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39980.t3

Sequence Viewer

Length: 1128 bp
ATGGCGGAGCCCAAGAACCAGACGCGACTCCTACACCTCCCCACGGAGGTCATACGCGAGATTCTAGGCTGGCTTCCCGTGAAATCCCTCTGCCGATTCAGGTGTGTCTCAAACACATGGCTCTCTCTAATCTCTGAACCCATCTTTGTGAACTCACACTTCAACAAAGCCCTTGAGCATCAACATGTCTTCCACCAAAGACGAAGAGTTGTGATTAGAGACTCTTGGCTATGCCGCCTCCACACTCTCAACCTTGATGAGTGTCTTCTCAATCATACAAATGTTGATAATCTTGGTGACGATGTTGTAGTTGTACCTACTCAACTCAAGCGTCGTAGATTTACCAAGTTCGTGTTGTACGCTAATGGGTTGTTGTTGTTGAAGTCGTACTTTGTGTTTTATTTGCTAAACCCGGCAACTAAGGAACACAAGATAGTACCAAACCCACCACAGATGTATATATCGTCTCATTGGCTGTATGGGTTTGGCTTTGATGTATCCACTCTTGATTACAAGGTGGTTCGGGGCGAGTTCTTTCAGTTTGATGTTGGGTTTAGTGTTTATTCATTGAAAACCGGGTCCTGGAGAGCGATTTCGAACCGATATCCCTATGAAAGTTTACAGCCTGGTATGCAGGGGAGAGTTTTGAATGGGAGTATTCACTGGTTGGTTTGTAGAAACTGCAGTAATGTGCCATCCATGGTTCTGTTGTGTTTTGGTTTAGCTGACGAGGAAGTTCAAGAGATTCCACTACCACCTGAGTTCCTTGTTGATTTCAACATTGAAGATGGCAAGTATTATTTCCTTGACATTTTCCAGGAATGCCTGTGTGTGGGGAGGACTGATGATTTCGAGTTTTGGGTCATGAAGGAATACGGACTGGCAAAGTCTTGGAGTAAAATAAGCATCTCCTTGCCATGTAGCGAAGGGATACTTTCCGGTTTCGTGAAGAACAATCATCATCTGTTGCTTGATTTGCCCCAACACCGTCTGGTTATGTACAATTTTGAAGATGGAAGCTCTCGGAATCTTTCAGTTGGGAGTAGTTACAAAGTTGATTTTGTTGGGTGCTACTTGGAGAGCCTTGTTTCGCCTAATCACTATCATATGACTGATGGAGAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

376

Amino Acids

43.52

Weight (kDa)

6.59

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 49 5.3e-11 F-box domain
F-box-like PF12937 11 - 48 1.7e-07 F-box-like
FBA_3 PF08268 110 - 307 4.2e-15 F-box associated beta propeller domain
FBA_1 PF07734 118 - 364 3.2e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 25, 57
AciI CCGC 2 cut(s) 5, 235
AfaI GTAC 5 cut(s) 315, 359, 389, 438, 1001
AfiI CCNNNNNNNGG 4 cut(s) 43, 46, 582, 832
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 8 cut(s) 163, 382, 571, 649, 740, 778, 785, 1010
AjnI CCWGG 3 cut(s) 581, 625, 816
AluBI AGCT 2 cut(s) 725, 1020
AluI AGCT 2 cut(s) 725, 1020
Alw26I GTCTC 3 cut(s) 112, 213, 471
AspS9I GGNCC 1 cut(s) 579
AsuC2I CCSGG 2 cut(s) 413, 577
AsuHPI GGTGA 1 cut(s) 308
AsuII TTCGAA 1 cut(s) 596
AvaII GGWCC 1 cut(s) 579
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 181, 257
BccI CCATC 5 cut(s) 149, 703, 782, 1007, 1109
BciT130I CCWGG 3 cut(s) 583, 627, 818
BciVI GTATCC 2 cut(s) 508, 924
BcnI CCSGG 2 cut(s) 413, 577
BcoDI GTCTC 3 cut(s) 112, 213, 471
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 682
BfuI GTATCC 2 cut(s) 508, 924
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 5 cut(s) 413, 577, 583, 627, 818
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 2 cut(s) 9, 580
BmrFI CCNGG 5 cut(s) 413, 577, 583, 627, 818
BmsI GCATC 2 cut(s) 187, 915
BpiI GAAGAC 2 cut(s) 181, 257
BpmI CTGGAG 1 cut(s) 604
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 2 cut(s) 194, 311
BpuMI CCSGG 2 cut(s) 413, 577
BsaJI CCNNGG 2 cut(s) 42, 699
BsaWI WCCGGW 1 cut(s) 938
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 46, 582, 832
Bse1I ACTGG 2 cut(s) 668, 885
BseBI CCWGG 3 cut(s) 583, 627, 818
BseDI CCNNGG 2 cut(s) 42, 699
BseGI GGATG 1 cut(s) 695
BseLI CCNNNNNNNGG 4 cut(s) 43, 46, 582, 832
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 2 cut(s) 668, 885
Bsh1236I CGCG 2 cut(s) 25, 57
BsiSI CCGG 3 cut(s) 413, 576, 939
BslI CCNNNNNNNGG 4 cut(s) 43, 46, 582, 832
BsmAI GTCTC 3 cut(s) 112, 213, 471
BsmBI CGTCTC 1 cut(s) 471
BsmI GAATGC 1 cut(s) 827
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 12
Bsp1407I TGTACA 1 cut(s) 999
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 2 cut(s) 5, 235
BspCNI CTCAG 1 cut(s) 751
BspFNI CGCG 2 cut(s) 25, 57
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 2 cut(s) 9, 580
BspMAI CTGCAG 1 cut(s) 686
BspT104I TTCGAA 1 cut(s) 596
BsrGI TGTACA 1 cut(s) 999
BsrI ACTGG 2 cut(s) 668, 885
BssECI CCNNGG 2 cut(s) 42, 699
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 583, 627, 818
Bst4CI ACNGT 1 cut(s) 989
Bst6I CTCTTC 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 999
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 420, 759
BstDSI CCRYGG 2 cut(s) 42, 699
BstF5I GGATG 1 cut(s) 695
BstFNI CGCG 2 cut(s) 25, 57
BstMAI GTCTC 3 cut(s) 112, 213, 471
BstMWI GCNNNNNNNGC 2 cut(s) 631, 976
BstNI CCWGG 3 cut(s) 583, 627, 818
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 5 cut(s) 411, 575, 581, 625, 816
BstSFI CTRYAG 1 cut(s) 682
BstUI CGCG 2 cut(s) 25, 57
BstV2I GAAGAC 2 cut(s) 181, 257
BsuI GTATCC 2 cut(s) 508, 924
BtgI CCRYGG 2 cut(s) 42, 699
BtsCI GGATG 1 cut(s) 695
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 71
CciI TCATGA 1 cut(s) 864
Cfr13I GGNCC 1 cut(s) 579
CseI GACGC 2 cut(s) 31, 320
Csp6I GTAC 5 cut(s) 314, 358, 388, 437, 1000
CviAII CATG 5 cut(s) 117, 185, 700, 865, 918
CviQI GTAC 5 cut(s) 314, 358, 388, 437, 1000
DdeI CTNAG 2 cut(s) 420, 759
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 12
Eco32I GATATC 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 579
EcoRII CCWGG 3 cut(s) 581, 625, 816
EcoRV GATATC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 699
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 5 cut(s) 120, 188, 703, 868, 921
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 918, 950
FatI CATG 5 cut(s) 116, 184, 699, 864, 917
FauNDI CATATG 1 cut(s) 1107
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 604
HapII CCGG 3 cut(s) 413, 576, 939
HgaI GACGC 2 cut(s) 31, 320
Hin1II CATG 5 cut(s) 120, 188, 703, 868, 921
HinfI GANTC 6 cut(s) 27, 61, 96, 221, 745, 1027
HpaII CCGG 3 cut(s) 413, 576, 939
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 151, 620
Hpy188I TCNGA 2 cut(s) 136, 1026
Hpy188III TCNNGA 4 cut(s) 506, 740, 865, 946
Hpy8I GTNNAC 2 cut(s) 151, 620
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 2 cut(s) 862, 920
HpyCH4III ACNGT 1 cut(s) 989
HpyCH4V TGCA 2 cut(s) 634, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 631, 976
HpyF3I CTNAG 2 cut(s) 420, 759
Hsp92II CATG 5 cut(s) 120, 188, 703, 868, 921
LmnI GCTCC 1 cut(s) 7
LweI GCATC 2 cut(s) 187, 915
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 296, 1046
MboII GAAGA 6 cut(s) 181, 216, 257, 797, 961, 1022
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 1003
MlyI GAGTC 2 cut(s) 21, 215
MnlI CCTC 6 cut(s) 40, 47, 98, 248, 724, 831
MslI CAYNNNNRTG 3 cut(s) 146, 183, 279
MspI CCGG 3 cut(s) 413, 576, 939
MspR9I CCNGG 5 cut(s) 413, 577, 583, 627, 818
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 3 cut(s) 583, 627, 818
MvnI CGCG 2 cut(s) 25, 57
MwoI GCNNNNNNNGC 2 cut(s) 631, 976
NciI CCSGG 2 cut(s) 413, 577
NcoI CCATGG 1 cut(s) 699
NdeI CATATG 1 cut(s) 1107
NlaIII CATG 5 cut(s) 120, 188, 703, 868, 921
NlaIV GGNNCC 2 cut(s) 9, 580
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 188
NspV TTCGAA 1 cut(s) 596
PagI TCATGA 1 cut(s) 864
PciI ACATGT 1 cut(s) 184
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 4 cut(s) 61, 96, 745, 1027
PfoI TCCNGGA 2 cut(s) 581, 816
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 2 cut(s) 21, 215
PpsI GAGTC 2 cut(s) 21, 215
PpuMI RGGWCCY 1 cut(s) 579
PscI ACATGT 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 579
Psp6I CCWGG 3 cut(s) 581, 625, 816
PspGI CCWGG 3 cut(s) 581, 625, 816
PspN4I GGNNCC 2 cut(s) 9, 580
PspPI GGNCC 1 cut(s) 579
PspPPI RGGWCCY 1 cut(s) 579
PstI CTGCAG 1 cut(s) 686
RsaI GTAC 5 cut(s) 315, 359, 389, 438, 1001
RsaNI GTAC 5 cut(s) 314, 358, 388, 437, 1000
RseI CAYNNNNRTG 3 cut(s) 146, 183, 279
SatI GCNGC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 2 cut(s) 21, 215
ScrFI CCNGG 5 cut(s) 413, 577, 583, 627, 818
SduI GDGCHC 1 cut(s) 12
SetI ASST 9 cut(s) 39, 51, 104, 255, 319, 519, 727, 760, 1022
SfaNI GCATC 2 cut(s) 187, 915
SfcI CTRYAG 1 cut(s) 682
SfuI TTCGAA 1 cut(s) 596
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 3 cut(s) 146, 183, 279
SmlI CTYRAG 2 cut(s) 173, 326
SmoI CTYRAG 2 cut(s) 173, 326
Sse9I AATT 1 cut(s) 1003
SsiI CCGC 2 cut(s) 5, 235
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 5 cut(s) 411, 575, 581, 625, 816
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 1 cut(s) 989
TaqI TCGA 2 cut(s) 596, 852
TasI AATT 1 cut(s) 1003
TatI WGTACW 1 cut(s) 999
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 4 cut(s) 61, 96, 745, 1027
TscAI CASTG 1 cut(s) 668
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 555, 627, 881
TspGWI ACGGA 2 cut(s) 59, 891
TspRI CASTG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 579
XceI RCATGY 1 cut(s) 188
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.