RchiOBHm_Chr2g0090931

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000111
Physical Location & Seq
Forward (+)
4694185 .. 4695057
873 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46613

Sequence Viewer

Length: 873 bp
ATGAAGATGGAAGACCGTCGTGTCAAGTTGACGGGAAACCAAAACGTCGACCTTCCAGCGGAGATCATAGATGAGATTCTTTCCAGATTACCAGTGAAGCCCTTGTGCCGCTTCAAGTGTGTATCAAAGTCATGGCGGTCCCTGATCTCTGATCCTGATTTTATTGCCATGCACTCCTCTAAAGCCTTTGAGATTAAGGATGTGTTGTCCCAAAGACTAAAACTATTATTTACTGACTGGGAAAGTGATTGCGTTTACTGTTTGGATGTTGGCCAGCTTCTCAACCATAATCATAATGTTGAAGTTGATGGTTTAGTAGCAACATCAGCTGAGCTCGATTTTGTTTTCGATAATCTTCCAAGAAGAGGTGGATACAATTGTACTGGCCTTGTGCATACGTGCAATAACTTCTTATTCTTCCAGATAACTGACCCTTTTGAAACAAATAATAGCTTTTTGCATAACCATTTGATAACTAACCCTGCAACGAGGGAATTAAAGAAAGTACCATTGCCACCACCGTGGAGGCTACAAAGGGAGCCTGATTTTTTGGACTATTATGGTTTTGGATTTGATTACTCCACTAATCAATACAAGGTGGTTAACATGCAGGTATATGTCATTTATGGGATTGTGTTTAGTGTCTATACATTGGAAACTAGTTCTTGGCGACGAGTTGAGGGTGAATTTCTCTACTTTCCTATGAGTACAGGTGGAATCGTGCTGAATGGCCATGTTCATTGGTTGGCCAAGTGTGAGGCCAAACAAGATCCACCATTGTTGATTATATCTTTTAATTTAGCAAAGGAGGAGGTCAGAGAAATTCCACTACCAGCCATACGACGAGAATATAGATCGATTAGGGGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

290

Amino Acids

33.59

Weight (kDa)

6.25

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 54 7.9e-12 F-box domain
F-box-like PF12937 17 - 52 1.6e-08 F-box-like
FBA_1 PF07734 124 - 280 1.5e-14 F-box associated beta propeller domain
FBA_3 PF08268 155 - 279 1.2e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 48
AciI CCGC 3 cut(s) 59, 109, 136
AclWI GGATC 2 cut(s) 146, 764
AcoI YGGCCR 3 cut(s) 271, 730, 747
AcsI RAATTY 2 cut(s) 686, 822
AfaI GTAC 3 cut(s) 382, 507, 709
AfiI CCNNNNNNNGG 2 cut(s) 58, 365
AgsI TTSAA 3 cut(s) 115, 302, 440
AhlI ACTAGT 1 cut(s) 659
AleI CACNNNNGTG 1 cut(s) 520
AluBI AGCT 4 cut(s) 277, 329, 334, 453
AluI AGCT 4 cut(s) 277, 329, 334, 453
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 2 cut(s) 146, 764
AoxI GGCC 5 cut(s) 271, 385, 730, 747, 759
ApoI RAATTY 2 cut(s) 686, 822
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 695
AvaII GGWCC 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BalI TGGCCA 3 cut(s) 273, 732, 749
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 1 cut(s) 302
BciVI GTATCC 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 601
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 1 cut(s) 109
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 140, 540
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 330
Bsa29I ATCGAT 1 cut(s) 857
BsaAI YACGTR 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 521
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 365
Bse1I ACTGG 3 cut(s) 92, 242, 388
Bse3DI GCAATG 1 cut(s) 509
BseCI ATCGAT 1 cut(s) 857
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 2 cut(s) 205, 271
BseLI CCNNNNNNNGG 2 cut(s) 58, 365
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 92, 242, 388
BseRI GAGGAG 2 cut(s) 166, 824
BshFI GGCC 5 cut(s) 273, 387, 732, 749, 761
BshVI ATCGAT 1 cut(s) 857
BsiHKAI GWGCWC 1 cut(s) 336
BslFI GGGAC 2 cut(s) 124, 193
BslI CCNNNNNNNGG 2 cut(s) 58, 365
BsmFI GGGAC 2 cut(s) 124, 193
BsnI GGCC 5 cut(s) 273, 387, 732, 749, 761
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 5 cut(s) 63, 144, 151, 769, 854
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 59, 109, 136
BspANI GGCC 5 cut(s) 273, 387, 732, 749, 761
BspCNI CTCAG 1 cut(s) 322
BspDI ATCGAT 1 cut(s) 857
BspLI GGNNCC 2 cut(s) 140, 540
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 2 cut(s) 146, 764
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 3 cut(s) 92, 242, 388
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 5 cut(s) 63, 144, 151, 769, 854
Bst4CI ACNGT 3 cut(s) 17, 260, 522
Bst6I CTCTTC 1 cut(s) 358
BstBAI YACGTR 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 205, 271
BstKTI GATC 5 cut(s) 66, 147, 154, 772, 857
BstMBI GATC 5 cut(s) 63, 144, 151, 769, 854
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 610
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 769
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 857
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 5 cut(s) 273, 387, 732, 749, 761
BsuTUI ATCGAT 1 cut(s) 857
BtgI CCRYGG 1 cut(s) 521
BtsCI GGATG 2 cut(s) 205, 271
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 857
Csp6I GTAC 3 cut(s) 381, 506, 708
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 4 cut(s) 132, 169, 607, 734
CviQI GTAC 3 cut(s) 381, 506, 708
DdeI CTNAG 1 cut(s) 330
DpnI GATC 5 cut(s) 65, 146, 153, 771, 856
DpnII GATC 5 cut(s) 63, 144, 151, 769, 854
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 3 cut(s) 271, 730, 747
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 4 cut(s) 135, 172, 610, 737
FaqI GGGAC 2 cut(s) 124, 193
FatI CATG 4 cut(s) 131, 168, 606, 733
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 212, 278
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 1 cut(s) 660
GluI GCNGC 1 cut(s) 109
HaeIII GGCC 5 cut(s) 273, 387, 732, 749, 761
Hin1II CATG 4 cut(s) 135, 172, 610, 737
HincII GTYRAC 3 cut(s) 30, 49, 604
HindII GTYRAC 3 cut(s) 30, 49, 604
HinfI GANTC 2 cut(s) 76, 717
HpaI GTTAAC 1 cut(s) 604
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 4 cut(s) 30, 49, 256, 604
Hpy188I TCNGA 2 cut(s) 151, 818
Hpy188III TCNNGA 3 cut(s) 84, 155, 421
Hpy8I GTNNAC 4 cut(s) 30, 49, 256, 604
Hpy99I CGWCG 4 cut(s) 21, 50, 675, 846
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 17, 260, 522
HpyCH4IV ACGT 2 cut(s) 45, 398
HpyCH4V TGCA 6 cut(s) 172, 394, 402, 460, 485, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 45, 398
Hsp92II CATG 4 cut(s) 135, 172, 610, 737
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 5 cut(s) 63, 144, 151, 769, 854
LmnI GCTCC 1 cut(s) 538
MaeI CTAG 1 cut(s) 660
MaeII ACGT 2 cut(s) 45, 398
MalI GATC 5 cut(s) 65, 146, 153, 771, 856
MboI GATC 5 cut(s) 63, 144, 151, 769, 854
MboII GAAGA 5 cut(s) 16, 23, 347, 375, 409
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 3 cut(s) 273, 732, 749
MluCI AATT 5 cut(s) 376, 494, 686, 796, 822
MluNI TGGCCA 3 cut(s) 273, 732, 749
MnlI CCTC 8 cut(s) 187, 359, 483, 519, 673, 751, 802, 805
Mox20I TGGCCA 3 cut(s) 273, 732, 749
MscI TGGCCA 3 cut(s) 273, 732, 749
MseI TTAA 4 cut(s) 195, 497, 603, 795
MslI CAYNNNNRTG 1 cut(s) 520
Msp20I TGGCCA 3 cut(s) 273, 732, 749
MspA1I CMGCKG 2 cut(s) 59, 329
MunI CAATTG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 5 cut(s) 63, 144, 151, 769, 854
NlaIII CATG 4 cut(s) 135, 172, 610, 737
NlaIV GGNNCC 2 cut(s) 140, 540
NspI RCATGY 1 cut(s) 610
OliI CACNNNNGTG 1 cut(s) 520
PfeI GAWTC 2 cut(s) 76, 717
PkrI GCNGC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 140, 540
PspPI GGNCC 1 cut(s) 138
PsuI RGATCY 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 3 cut(s) 382, 507, 709
RsaNI GTAC 3 cut(s) 381, 506, 708
RseI CAYNNNNRTG 1 cut(s) 520
SacI GAGCTC 1 cut(s) 336
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 195, 497, 603, 795
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 5 cut(s) 63, 144, 151, 769, 854
Sau96I GGNCC 1 cut(s) 138
SduI GDGCHC 1 cut(s) 336
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 520
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 5 cut(s) 376, 494, 686, 796, 822
SsiI CCGC 3 cut(s) 59, 109, 136
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 1 cut(s) 336
TaaI ACNGT 3 cut(s) 17, 260, 522
TaiI ACGT 2 cut(s) 48, 401
TaqI TCGA 4 cut(s) 48, 336, 348, 857
TasI AATT 5 cut(s) 376, 494, 686, 796, 822
TatI WGTACW 2 cut(s) 380, 707
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 76, 717
Tru1I TTAA 4 cut(s) 195, 497, 603, 795
Tru9I TTAA 4 cut(s) 195, 497, 603, 795
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 17, 728
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 2 cut(s) 686, 822
XceI RCATGY 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.