Rorug05G0416000

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
57603559 .. 57606690
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0416000.1

Sequence Viewer

Length: 1005 bp
ATGGGAGAAATGACTGGCTTCCAATTGGGCGTTATTGGTGCACTGTTCCTTTCAGTGGCATCATCTGTGTCCATTGTTATATGCAACAAAGCCTTGATGAGCAACCTTGGCTTCCCATTTGCAACAACACTTACCAGTTGGCATCTCATGGTAACTTTCTGCACACTTCATGTGGCAAATCGTCTCAATTTCTTCGAGAGCAAGTCAATTGACATGAAGACTGTCATGCTCTTTGGCATTCTAAATGGTGTTTCCATTGGACTACTCAATTTGAGTCTGGGATTCAATTCTGTTGGGTTCTACCAGATGACCAAGCTTGCAATCATACCATTTACTGTGTTAGTGGAGACTCTTTTCCTGAGAAAGCAATTCAGCCAGCAAATAAAGTTTTCTCTCTTCCTATTACTTGTTGGAGTTGGCATTGCCTCTGTGACAGACCTCCAGCTCAATTTTGTTGGAACCATTCTCTCGCTTCTAGCCATCATAACAACCTGTGTTGGACAAATTCTAACAAACACAATACAGAAGAGGCTCAATGTTTCTTCTACTCAGCTACTCTACCAGTCAGCACCTTTTCAAGCAGCTATTCTTTTCGTCTCCGGACCTGTGGTGGATCAGTTCCTCACCAAGCAAAGCGTCTTTTCCCACAAATACTCCCCCATAGTCTTGGTATTCATCATACTCTCATGCCTAATAGCTGTCTCTGTGAACTTTAGCACCTTTTTGGTGATTGGCAAGACATCACCAGTGACATATCAAGTGCTAGGGCACCTCAAGACATGCCTTGTTCTAGGGTTCGGCTATACATTACTACATGACCCTTTCACTGAGAGGAACATAATCGGAATTCTGGTGGCCATTTTTGGGATGGGATTGTATTCATATTTCTGTGCACAAGAGAACAAAAAGAAACAAGCAGCTGACGTTAAGGATGGTGCTCCACTTTTGAGTCAGGATAAAGATAGCCATGAGGTTAAGAAATTAACCAAGAACTCTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

334

Amino Acids

36.54

Weight (kDa)

9.27

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 21 - 294 9.5e-20 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 768
AccIII TCCGGA 1 cut(s) 599
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 2 cut(s) 504, 846
AfiI CCNNNNNNNGG 2 cut(s) 55, 864
AgsI TTSAA 2 cut(s) 286, 578
AluBI AGCT 6 cut(s) 316, 445, 553, 584, 698, 920
AluI AGCT 6 cut(s) 316, 445, 553, 584, 698, 920
Alw21I GWGCWC 3 cut(s) 43, 895, 940
Alw26I GTCTC 4 cut(s) 188, 341, 601, 706
Alw44I GTGCAC 2 cut(s) 39, 891
AlwI GGATC 1 cut(s) 621
Aor13HI TCCGGA 1 cut(s) 599
AoxI GGCC 1 cut(s) 855
ApaLI GTGCAC 2 cut(s) 39, 891
ApeKI GCWGC 2 cut(s) 581, 917
ApoI RAATTY 2 cut(s) 504, 846
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 3 cut(s) 616, 735, 739
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 3 cut(s) 43, 771, 895
BalI TGGCCA 1 cut(s) 857
BanI GGYRCC 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 3 cut(s) 43, 895, 940
BbvI GCAGC 2 cut(s) 593, 929
BccI CCATC 3 cut(s) 488, 862, 926
BcoDI GTCTC 4 cut(s) 188, 341, 601, 706
BfaI CTAG 3 cut(s) 476, 764, 791
BisI GCNGC 2 cut(s) 582, 918
BlsI GCNGC 2 cut(s) 583, 919
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 2 cut(s) 460, 770
BmsI GCATC 2 cut(s) 68, 151
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 864
Bse1I ACTGG 4 cut(s) 19, 135, 562, 746
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 599
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 2 cut(s) 873, 937
BseLI CCNNNNNNNGG 2 cut(s) 55, 864
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 3 cut(s) 350, 563, 819
BseNI ACTGG 4 cut(s) 19, 135, 562, 746
BseSI GKGCMC 3 cut(s) 43, 771, 895
BseXI GCAGC 2 cut(s) 593, 929
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 1 cut(s) 857
BshNI GGYRCC 1 cut(s) 768
BsiHKAI GWGCWC 3 cut(s) 43, 895, 940
BsiSI CCGG 1 cut(s) 600
BslI CCNNNNNNNGG 2 cut(s) 55, 864
BsmAI GTCTC 4 cut(s) 188, 341, 601, 706
BsmBI CGTCTC 2 cut(s) 188, 601
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 857
Bsp1286I GDGCHC 4 cut(s) 43, 771, 895, 940
Bsp13I TCCGGA 1 cut(s) 599
Bsp143I GATC 1 cut(s) 613
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 3 cut(s) 351, 562, 820
BspEI TCCGGA 1 cut(s) 599
BspLI GGNNCC 2 cut(s) 460, 770
BspPI GGATC 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 768
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 4 cut(s) 19, 135, 562, 746
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 45, 223, 337
Bst6I CTCTTC 2 cut(s) 401, 521
BstC8I GCNNGC 2 cut(s) 318, 377
BstDEI CTNAG 3 cut(s) 359, 549, 828
BstF5I GGATG 2 cut(s) 873, 937
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 4 cut(s) 188, 341, 601, 706
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 783
BstSLI GKGCMC 3 cut(s) 43, 771, 895
BstV1I GCAGC 2 cut(s) 593, 929
BstV2I GAAGAC 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 667
BsuRI GGCC 1 cut(s) 857
BtsCI GGATG 2 cut(s) 873, 937
BtsIMutI CAGTG 4 cut(s) 41, 60, 753, 825
Cac8I GCNNGC 2 cut(s) 318, 377
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 625
CviAII CATG 8 cut(s) 148, 170, 214, 226, 687, 780, 815, 968
DdeI CTNAG 3 cut(s) 359, 549, 828
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 2 cut(s) 401, 521
EarI CTCTTC 2 cut(s) 401, 521
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 846
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 2 cut(s) 188, 601
FaeI CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
FatI CATG 8 cut(s) 147, 169, 213, 225, 686, 779, 814, 967
Fnu4HI GCNGC 2 cut(s) 582, 918
FokI GGATG 2 cut(s) 880, 944
Fsp4HI GCNGC 2 cut(s) 582, 918
FspBI CTAG 3 cut(s) 476, 764, 791
GluI GCNGC 2 cut(s) 582, 918
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 1 cut(s) 857
HapII CCGG 1 cut(s) 600
HgaI GACGC 1 cut(s) 625
Hin1II CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 274, 282, 349, 949
HpaII CCGG 1 cut(s) 600
HphI GGTGA 3 cut(s) 616, 735, 739
Hpy166II GTNNAC 3 cut(s) 41, 709, 893
Hpy188I TCNGA 1 cut(s) 845
Hpy188III TCNNGA 5 cut(s) 196, 358, 600, 775, 953
Hpy8I GTNNAC 3 cut(s) 41, 709, 893
HpyCH4III ACNGT 3 cut(s) 45, 223, 337
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 6 cut(s) 41, 84, 122, 162, 320, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 3 cut(s) 359, 549, 828
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
Kpn2I TCCGGA 1 cut(s) 599
Kzo9I GATC 1 cut(s) 613
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 2 cut(s) 593, 929
LweI GCATC 2 cut(s) 68, 151
MaeI CTAG 3 cut(s) 476, 764, 791
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 151, 430, 748
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 5 cut(s) 184, 229, 388, 534, 538
MfeI CAATTG 2 cut(s) 23, 207
MhlI GDGCHC 4 cut(s) 43, 771, 895, 940
MlsI TGGCCA 1 cut(s) 857
MluNI TGGCCA 1 cut(s) 857
MlyI GAGTC 3 cut(s) 283, 343, 958
MmeI TCCRAC 3 cut(s) 391, 436, 478
MnlI CCTC 7 cut(s) 436, 449, 522, 632, 782, 825, 964
Mox20I TGGCCA 1 cut(s) 857
MroI TCCGGA 1 cut(s) 599
MscI TGGCCA 1 cut(s) 857
MseI TTAA 3 cut(s) 927, 975, 983
Msp20I TGGCCA 1 cut(s) 857
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 1 cut(s) 600
MunI CAATTG 2 cut(s) 23, 207
Mva1269I GAATGC 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 1 cut(s) 613
NlaIII CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
NlaIV GGNNCC 2 cut(s) 460, 770
NmuCI GTSAC 2 cut(s) 430, 748
NspI RCATGY 1 cut(s) 783
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 583, 919
PleI GAGTC 3 cut(s) 282, 343, 957
PpsI GAGTC 3 cut(s) 282, 343, 957
PspN4I GGNNCC 2 cut(s) 460, 770
PspPI GGNCC 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 920
SaqAI TTAA 3 cut(s) 927, 975, 983
SatI GCNGC 2 cut(s) 582, 918
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 3 cut(s) 283, 343, 958
SduI GDGCHC 4 cut(s) 43, 771, 895, 940
SfaNI GCATC 2 cut(s) 68, 151
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SspMI CTAG 3 cut(s) 476, 764, 791
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 3 cut(s) 45, 223, 337
TaiI ACGT 1 cut(s) 927
TaqI TCGA 1 cut(s) 195
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 927, 975, 983
Tru9I TTAA 3 cut(s) 927, 975, 983
TscAI CASTG 4 cut(s) 48, 60, 753, 832
TseFI GTSAC 2 cut(s) 430, 748
TseI GCWGC 2 cut(s) 581, 917
Tsp45I GTSAC 2 cut(s) 430, 748
TspDTI ATGAA 4 cut(s) 158, 230, 664, 870
TspRI CASTG 4 cut(s) 48, 60, 753, 832
VneI GTGCAC 2 cut(s) 39, 891
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 504, 846
XceI RCATGY 1 cut(s) 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XspI CTAG 3 cut(s) 476, 764, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.