Rroxscaffold_1G00052610

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000111
Physical Location & Seq
Forward (+)
73388714 .. 73390501
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052610.1

Sequence Viewer

Length: 783 bp
ATGTTTTCGTTAACTAACAAGTCATGGAAAAGAGTTGAAGACATACCTGACGAATATGATTTGTGTTCTTGGAGGAAGTGGGATCCTCTGAACGGAGCTTTTCACTGGTTACTTGAGGACATGGGAGACGAGGACCCTCCGTTCATTGCTGCGTTTGATTTAGCAGACGGCAAGTTCTCAGACTTGCCCCTACCTGAATCTTTCGACAGAGATTATAAGGACTTCACAACTGGTATTTTTGGAGGGTGTCTTTGTTTACTAGAAAAGCTTAATTCATTTCGATTGGAGTTCTCCTGTTGGGTTATGGAAAAATATGGTGTCAAGGAGTCTTGGACTAGGATTAGATTTTTGGCACACAACTGGGACCATCTTATTGATGTGATGCCAATATGCTACTGGAAGAAGACCAAGGAATTACTAGCCATAATTGATTATTGCCATTTAGTACGCTTGACAAATCCAACGGATGGCACTTATTATGTTGGCCCCGTGAATAAAGACCGTTTCCATCTTCCCATCTATATATCGGCGATGGTTTATACGAAGCTTGTCACTCCCATTGAAATATTGGAGAAAAGTAACAAAAATTTGTGTATTGTTGCAACACTATCACCGATTTTTAAAGCACCAGGACACAATTTTGAGAACACGAAGTCACAATTGGTGGCGCGTTTAGTTGAGAACATGAACATGACCTCTTTTAGAGGCATCTGCCTTCAATCTTTTGGCTGTTCATTCATCACAATGGTTTTTGAGCATCTACAGCAAAAAGTGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

260

Amino Acids

30.3

Weight (kDa)

5.67

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 467
AccII CGCG 1 cut(s) 670
AclWI GGATC 2 cut(s) 77, 90
AcsI RAATTY 1 cut(s) 586
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 2 cut(s) 92, 467
AgsI TTSAA 3 cut(s) 38, 563, 719
AjnI CCWGG 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 98, 268, 547
AluI AGCT 3 cut(s) 98, 268, 547
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 77, 90
AoxI GGCC 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 3 cut(s) 133, 364, 485
AsuHPI GGTGA 1 cut(s) 603
AvaII GGWCC 2 cut(s) 133, 364
BamHI GGATCC 1 cut(s) 82
BbsI GAAGAC 2 cut(s) 45, 410
BbvI GCAGC 1 cut(s) 136
BccI CCATC 5 cut(s) 375, 461, 516, 524, 526
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 3 cut(s) 260, 336, 419
BfmI CTRYAG 1 cut(s) 761
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 2 cut(s) 133, 364
BmgT120I GGNCC 3 cut(s) 133, 364, 485
BmiI GGNNCC 4 cut(s) 84, 135, 365, 487
BmrFI CCNGG 1 cut(s) 630
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 3 cut(s) 372, 717, 766
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 45, 410
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 467
Bse1I ACTGG 4 cut(s) 110, 235, 365, 401
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 2 cut(s) 92, 467
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 4 cut(s) 110, 235, 365, 401
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 670
BshFI GGCC 1 cut(s) 486
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 92, 467
BsmAI GTCTC 1 cut(s) 120
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 1 cut(s) 486
Bsp143I GATC 1 cut(s) 82
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 1 cut(s) 670
BspLI GGNNCC 4 cut(s) 84, 135, 365, 487
BspPI GGATC 2 cut(s) 77, 90
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 4 cut(s) 110, 235, 365, 401
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 1 cut(s) 503
BstDEI CTNAG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 472
BstFNI CGCG 1 cut(s) 670
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 761
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 2 cut(s) 45, 410
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 545
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 103
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 3 cut(s) 133, 364, 485
Csp6I GTAC 1 cut(s) 446
CviAII CATG 4 cut(s) 24, 121, 685, 691
CviJI RGCY 6 cut(s) 98, 268, 422, 486, 547, 729
CviKI_1 RGCY 6 cut(s) 98, 268, 422, 486, 547, 729
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 1 cut(s) 178
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraI TTTAAA 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 408
Eco47I GGWCC 2 cut(s) 133, 364
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 4 cut(s) 27, 124, 688, 694
FaqI GGGAC 1 cut(s) 377
FatI CATG 4 cut(s) 23, 120, 684, 690
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 3 cut(s) 260, 336, 419
GlaI GCGC 1 cut(s) 669
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 486
HhaI GCGC 1 cut(s) 670
Hin1II CATG 4 cut(s) 27, 124, 688, 694
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 266, 545
HinfI GANTC 2 cut(s) 197, 326
HpaI GTTAAC 1 cut(s) 12
HphI GGTGA 1 cut(s) 603
Hpy166II GTNNAC 2 cut(s) 12, 257
Hpy188I TCNGA 2 cut(s) 90, 181
Hpy8I GTNNAC 2 cut(s) 12, 257
HpyAV CCTTC 1 cut(s) 725
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4V TGCA 1 cut(s) 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 1 cut(s) 178
Hsp92II CATG 4 cut(s) 27, 124, 688, 694
HspAI GCGC 1 cut(s) 668
KspAI GTTAAC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 9 cut(s) 60, 91, 207, 216, 307, 346, 382, 615, 642
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 3 cut(s) 372, 717, 766
MaeI CTAG 3 cut(s) 260, 336, 419
MaeIII GTNAC 4 cut(s) 108, 550, 578, 654
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 50, 412, 415, 503
MfeI CAATTG 1 cut(s) 659
MflI RGATCY 1 cut(s) 82
MluCI AATT 6 cut(s) 271, 413, 426, 586, 637, 659
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 485, 756
MnlI CCTC 8 cut(s) 66, 96, 109, 124, 147, 236, 698, 706
MseI TTAA 3 cut(s) 11, 270, 621
MslI CAYNNNNRTG 2 cut(s) 689, 743
MspR9I CCNGG 1 cut(s) 630
MunI CAATTG 1 cut(s) 659
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 1 cut(s) 763
NdeII GATC 1 cut(s) 82
NlaIII CATG 4 cut(s) 27, 124, 688, 694
NlaIV GGNNCC 4 cut(s) 84, 135, 365, 487
NmuCI GTSAC 2 cut(s) 550, 654
PfeI GAWTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 467
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 133
PsiI TTATAA 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 4 cut(s) 84, 135, 365, 487
PspPI GGNCC 3 cut(s) 133, 364, 485
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
RseI CAYNNNNRTG 2 cut(s) 689, 743
SaqAI TTAA 3 cut(s) 11, 270, 621
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 3 cut(s) 133, 364, 485
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 630
SetI ASST 6 cut(s) 49, 100, 196, 270, 549, 698
SfaNI GCATC 3 cut(s) 372, 717, 766
SfcI CTRYAG 1 cut(s) 761
SinI GGWCC 2 cut(s) 133, 364
SmiMI CAYNNNNRTG 2 cut(s) 689, 743
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 6 cut(s) 271, 413, 426, 586, 637, 659
SspI AATATT 1 cut(s) 567
SspMI CTAG 3 cut(s) 260, 336, 419
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 503
TaqI TCGA 2 cut(s) 204, 280
TasI AATT 6 cut(s) 271, 413, 426, 586, 637, 659
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 3 cut(s) 11, 270, 621
Tru9I TTAA 3 cut(s) 11, 270, 621
TscAI CASTG 1 cut(s) 110
TseFI GTSAC 2 cut(s) 550, 654
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 2 cut(s) 550, 654
TspDTI ATGAA 5 cut(s) 133, 264, 701, 723, 727
TspGWI ACGGA 3 cut(s) 108, 129, 479
TspRI CASTG 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 133, 364
XapI RAATTY 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 2 cut(s) 393, 565
XspI CTAG 3 cut(s) 260, 336, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.