RLG00000004300

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000111
Physical Location & Seq
Reverse (-)
58090629 .. 58095504
4876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004300

Sequence Viewer

Length: 1113 bp
ATGGCAGAGCGAAAGAACATGAGGACGAGGCTGAGGAGAAACCCTGAAATCCCAGAAGAGATCATATATGAAATTCTTGCATGTCTTCAGGTCAAGCCACTATGCAGGCTCAGATGTGTGTTAAAGCGATGGTGCTCTCTGATTTCACACCCTGATTTTGTTAAAATGCACACTAACATAGCCATCGAGAATGAGGATATTTTGTACCAGAGAAGGAGACTCATTTTCACTGATGGGTTAAATAAGTCACTTTACTCTTTGGCCCTCGATGAGTTTCTGAATCCTATATATGCAGTTGATGCTGGTGTGGTCAGTAAGCTTGATTTTAAGCTGTCTTACTGCAATGGCTTAGCATTGTTCAAGTTGTATTCAGGGGAGAACATTGAGGAGTTATATATAGCTAACCCAGCCACCAGGGAATATAAGCAACTGCCGATGGCACCATATCCTGACCATTTTTTGCCCTTAGGGTTTGGATTTGATACCTCCATTGAGGATTACAAATTGGTTACCATGTGTGCATTGGAAGAGGGAATTGAGTTTAGTGTCTATACTTTGAAAACCGGTTCGTGGAGAGTGATAGAAAGGTTATATCCTTACAAATTACGGCGCTGTTTCGATGGGGTCCTGCTGAATGGAGGTCTTCATTGGTTTGTGCGTTCAGAAGTACACGACGATGTTCATGAAGAAGAAGAAGAAGAAGGTGACCCGTGGGTGATTATATGTTTCAATTTAGAAGCTGAGGATGTCAGAGAAATTTCGCTACCATTTGATGAGTCCTTTGAAGCCAACAAATATAATGTGGCGCTCTACCAGGGACAGCTGTGTGTAACACATAATGATTTCGGAGAACAACATAATGAGTTTTGGGTGATGGATGAATATGGAGTGGAGAAGTCTTGGACCAAAATAATAATCTCTCCCGTCCTTGCCTATTGGAATTATACCCCTACTTGTTACCGGACAAAAGATCGTGATCTTTGGGTCGGCGATGGTCAGTTGGTTATGTGCAATTTTGATGATGACGATAGCTCTTGGAATTTGCCATCTGTTCGCAAACTTCCCCATGTTAGTGGTCAAGTTGGGATCTACATTGAGAGCCTTTTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

371

Amino Acids

43.3

Weight (kDa)

4.95

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 109 - 278 1.4e-08 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 110 - 306 5.3e-23 F-box associated beta propeller domain
FBA_3 PF08268 110 - 310 2.4e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AclWI GGATC 1 cut(s) 1094
AcsI RAATTY 3 cut(s) 72, 756, 1039
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 206, 669
AfiI CCNNNNNNNGG 1 cut(s) 570
AgeI ACCGGT 1 cut(s) 563
AgsI TTSAA 4 cut(s) 361, 559, 730, 785
AjnI CCWGG 2 cut(s) 413, 813
AluBI AGCT 6 cut(s) 319, 331, 401, 740, 823, 1032
AluI AGCT 6 cut(s) 319, 331, 401, 740, 823, 1032
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 1094
AoxI GGCC 1 cut(s) 261
ApoI RAATTY 3 cut(s) 72, 756, 1039
AsiGI ACCGGT 1 cut(s) 563
AspLEI GCGC 2 cut(s) 612, 808
AspS9I GGNCC 3 cut(s) 262, 625, 903
AsuHPI GGTGA 3 cut(s) 716, 727, 883
AvaII GGWCC 2 cut(s) 625, 903
AxyI CCTNAGG 1 cut(s) 466
BanI GGYRCC 1 cut(s) 439
BbsI GAAGAC 2 cut(s) 77, 635
Bbv12I GWGCWC 1 cut(s) 137
BbvCI CCTCAGC 2 cut(s) 32, 741
BccI CCATC 8 cut(s) 123, 191, 227, 430, 614, 868, 986, 1054
BceAI ACGGC 1 cut(s) 623
BciT130I CCWGG 2 cut(s) 415, 815
BcoDI GTCTC 1 cut(s) 211
BfoI RGCGCY 2 cut(s) 613, 809
BlpI GCTNAGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 415, 815
Bme18I GGWCC 2 cut(s) 625, 903
BmgT120I GGNCC 3 cut(s) 262, 625, 903
BmiI GGNNCC 2 cut(s) 441, 626
BmrFI CCNGG 2 cut(s) 415, 815
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 77, 635
Bpu10I CCTNAGC 2 cut(s) 32, 741
Bpu1102I GCTNAGC 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 975
BsaJI CCNNGG 3 cut(s) 414, 710, 814
BsaWI WCCGGW 2 cut(s) 563, 960
Bsc4I CCNNNNNNNGG 1 cut(s) 570
Bse118I RCCGGY 1 cut(s) 563
Bse21I CCTNAGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 2 cut(s) 415, 815
BseDI CCNNGG 3 cut(s) 414, 710, 814
BseGI GGATG 2 cut(s) 751, 883
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 1 cut(s) 570
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 23, 124, 732
BseRI GAGGAG 2 cut(s) 49, 401
BseYI CCCAGC 1 cut(s) 406
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 439
BshTI ACCGGT 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 564, 961
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 1 cut(s) 570
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 4 cut(s) 60, 970, 976, 1086
Bsp1720I GCTNAGC 1 cut(s) 349
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 3 cut(s) 24, 123, 733
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 441, 626
BspPI GGATC 1 cut(s) 1094
BspT107I GGYRCC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 3 cut(s) 414, 710, 814
BssMI GATC 4 cut(s) 60, 970, 976, 1086
Bst2UI CCWGG 2 cut(s) 415, 815
Bst6I CTCTTC 2 cut(s) 51, 522
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 5 cut(s) 32, 110, 349, 466, 741
BstDSI CCRYGG 1 cut(s) 710
BstEII GGTNACC 2 cut(s) 508, 704
BstF5I GGATG 2 cut(s) 751, 883
BstH2I RGCGCY 2 cut(s) 613, 809
BstHHI GCGC 2 cut(s) 612, 808
BstKTI GATC 4 cut(s) 63, 973, 979, 1089
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 4 cut(s) 60, 970, 976, 1086
BstMWI GCNNNNNNNGC 2 cut(s) 299, 407
BstNI CCWGG 2 cut(s) 415, 815
BstNSI RCATGY 1 cut(s) 84
BstPI GGTNACC 2 cut(s) 508, 704
BstSCI CCNGG 2 cut(s) 413, 813
BstV2I GAAGAC 2 cut(s) 77, 635
BstX2I RGATCY 1 cut(s) 1086
BstXI CCANNNNNNTGG 1 cut(s) 1073
BstYI RGATCY 1 cut(s) 1086
Bsu36I CCTNAGG 1 cut(s) 466
BsuRI GGCC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 710
BtgZI GCGATG 2 cut(s) 142, 1005
BtsCI GGATG 2 cut(s) 751, 883
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 107
CciI TCATGA 1 cut(s) 682
CfoI GCGC 2 cut(s) 612, 808
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 3 cut(s) 262, 625, 903
Csp6I GTAC 2 cut(s) 205, 668
CspAI ACCGGT 1 cut(s) 563
CviAII CATG 5 cut(s) 19, 81, 514, 683, 1067
CviQI GTAC 2 cut(s) 205, 668
DdeI CTNAG 5 cut(s) 32, 110, 349, 466, 741
DpnI GATC 4 cut(s) 62, 972, 978, 1088
DpnII GATC 4 cut(s) 60, 970, 976, 1086
Eam1104I CTCTTC 2 cut(s) 51, 522
EarI CTCTTC 2 cut(s) 51, 522
Eco47I GGWCC 2 cut(s) 625, 903
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 466
Eco91I GGTNACC 2 cut(s) 508, 704
EcoO109I RGGNCCY 1 cut(s) 625
EcoO65I GGTNACC 2 cut(s) 508, 704
EcoRII CCWGG 2 cut(s) 413, 813
FaeI CATG 5 cut(s) 22, 84, 517, 686, 1070
FaqI GGGAC 1 cut(s) 831
FatI CATG 5 cut(s) 18, 80, 513, 682, 1066
FokI GGATG 2 cut(s) 758, 890
GlaI GCGC 2 cut(s) 611, 807
GsaI CCCAGC 1 cut(s) 410
HaeII RGCGCY 2 cut(s) 613, 809
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 564, 961
HhaI GCGC 2 cut(s) 612, 808
Hin1II CATG 5 cut(s) 22, 84, 517, 686, 1070
Hin6I GCGC 2 cut(s) 610, 806
HinP1I GCGC 2 cut(s) 610, 806
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 3 cut(s) 219, 280, 776
HpaII CCGG 2 cut(s) 564, 961
HphI GGTGA 3 cut(s) 716, 727, 883
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 6 cut(s) 113, 141, 279, 664, 752, 848
Hpy188III TCNNGA 4 cut(s) 187, 449, 683, 974
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 2 cut(s) 207, 695
HpyCH4V TGCA 7 cut(s) 80, 105, 169, 293, 342, 521, 1011
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 407
HpyF3I CTNAG 5 cut(s) 32, 110, 349, 466, 741
Hsp92II CATG 5 cut(s) 22, 84, 517, 686, 1070
HspAI GCGC 2 cut(s) 610, 806
Kzo9I GATC 4 cut(s) 60, 970, 976, 1086
LweI GCATC 1 cut(s) 289
MaeIII GTNAC 5 cut(s) 246, 508, 704, 829, 956
MalI GATC 4 cut(s) 62, 972, 978, 1088
MboI GATC 4 cut(s) 60, 970, 976, 1086
MboII GAAGA 9 cut(s) 68, 77, 539, 635, 698, 701, 704, 707, 710
MflI RGATCY 1 cut(s) 1086
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 9 cut(s) 72, 503, 534, 602, 730, 756, 940, 1012, 1039
MlyI GAGTC 2 cut(s) 213, 785
MseI TTAA 4 cut(s) 122, 162, 239, 327
MslI CAYNNNNRTG 2 cut(s) 675, 1071
MspA1I CMGCKG 1 cut(s) 823
MspI CCGG 2 cut(s) 564, 961
MspR9I CCNGG 2 cut(s) 415, 815
MvaI CCWGG 2 cut(s) 415, 815
MwoI GCNNNNNNNGC 2 cut(s) 299, 407
NdeII GATC 4 cut(s) 60, 970, 976, 1086
NlaIII CATG 5 cut(s) 22, 84, 517, 686, 1070
NlaIV GGNNCC 2 cut(s) 441, 626
NmuCI GTSAC 2 cut(s) 246, 704
NspI RCATGY 1 cut(s) 84
PagI TCATGA 1 cut(s) 682
PfeI GAWTC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 563
PleI GAGTC 2 cut(s) 213, 784
PpsI GAGTC 2 cut(s) 213, 784
PpuMI RGGWCCY 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 625
Psp6I CCWGG 2 cut(s) 413, 813
PspEI GGTNACC 2 cut(s) 508, 704
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 2 cut(s) 413, 813
PspN4I GGNNCC 2 cut(s) 441, 626
PspPI GGNCC 3 cut(s) 262, 625, 903
PspPPI RGGWCCY 1 cut(s) 625
PsuI RGATCY 1 cut(s) 1086
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 2 cut(s) 206, 669
RsaNI GTAC 2 cut(s) 205, 668
RseI CAYNNNNRTG 2 cut(s) 675, 1071
SaqAI TTAA 4 cut(s) 122, 162, 239, 327
Sau3AI GATC 4 cut(s) 60, 970, 976, 1086
Sau96I GGNCC 3 cut(s) 262, 625, 903
SchI GAGTC 2 cut(s) 213, 785
ScrFI CCNGG 2 cut(s) 415, 815
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 2 cut(s) 625, 903
SmiMI CAYNNNNRTG 2 cut(s) 675, 1071
Sse9I AATT 9 cut(s) 72, 503, 534, 602, 730, 756, 940, 1012, 1039
StyD4I CCNGG 2 cut(s) 413, 813
TaqI TCGA 3 cut(s) 186, 267, 618
TasI AATT 9 cut(s) 72, 503, 534, 602, 730, 756, 940, 1012, 1039
TatI WGTACW 1 cut(s) 667
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 4 cut(s) 122, 162, 239, 327
Tru9I TTAA 4 cut(s) 122, 162, 239, 327
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 246, 704
Tsp45I GTSAC 2 cut(s) 246, 704
TspDTI ATGAA 6 cut(s) 84, 635, 671, 699, 894, 1097
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 625, 903
XapI RAATTY 3 cut(s) 72, 756, 1039
XceI RCATGY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.