Rh5DG504900

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
78992629 .. 78993219
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG504900.1

Sequence Viewer

Length: 591 bp
ATGGTTTGTGGGGAGTACTACCGATATGAACTTTGGTTCAGTGTATATTCGTTGAAAACCGGTTCTTGGAGAGTCATTCCAAGGGGATATGACTATGGGGCTTTAGATTTAAAATCTAATATGGAGGGGATAGTAGTAAATGGAAATATTCATTGGTTGGTTCGTACAAAAGACAGTGCATCGTCCATGGTTCTGGTGTCTTTTCTTGTTGCAGAGGAAATGGTTCGGACTATTCCGCTGCCGCCTGGTTTCAATTCTGAAGGTGGTGATTATTATCTGACTGTCTTTAGGGAATGTCTATGTGTGGCAGTGAAGGGGGGTCCAGAGTACTGGATCATGAACGAATATGGAGTGAGAGAATCTTGGACTCAACAAAGAATGTCCGTCCCTAGTTCCCGATGGTTACATTTAGGTTTCAGGAAAAACAATCATGAACTGGTGTACTTCGATGACCGTCAGCGTTTGGTTATGTACAATTTTAATGAAGATCGCTTTTGCAATCTACCCTTTTGTGATCGTCCCGGAATTAAGTTTGCTGCGATCTATGTGGAGACCATTTTTTCACTCAATTGCTATCGCGGCATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

22.95

Weight (kDa)

6.32

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 10 - 158 3.4e-12 F-box associated beta propeller domain
FBA_3 PF08268 14 - 147 1.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AciI CCGC 3 cut(s) 236, 242, 579
AclWI GGATC 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 5 cut(s) 17, 166, 329, 443, 473
AfiI CCNNNNNNNGG 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 55, 253
AjnI CCWGG 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 136, 168
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 238, 536
AsiGI ACCGGT 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 225, 523
BccI CCATC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 1 cut(s) 390
BisI GCNGC 4 cut(s) 239, 242, 537, 580
BlsI GCNGC 4 cut(s) 240, 243, 538, 581
BmcAI AGTACT 2 cut(s) 17, 329
Bme1390I CCNGG 2 cut(s) 246, 522
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 2 cut(s) 246, 522
BmsI GCATC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 522
BsaBI GATNNNNATC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 80, 186
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 335, 441
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 80, 186
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 335, 441
BseXI GCAGC 2 cut(s) 225, 523
Bsh1236I CGCG 1 cut(s) 579
BshTI ACCGGT 1 cut(s) 59
BsiSI CCGG 2 cut(s) 60, 522
BslFI GGGAC 2 cut(s) 371, 504
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 545
BsmFI GGGAC 2 cut(s) 371, 504
Bso31I GGTCTC 1 cut(s) 545
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 4 cut(s) 333, 487, 514, 540
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 236, 242, 579
BspFNI CGCG 1 cut(s) 579
BspHI TCATGA 2 cut(s) 336, 430
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 545
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 2 cut(s) 335, 441
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 80, 186
BssMI GATC 4 cut(s) 333, 487, 514, 540
BssT1I CCWWGG 2 cut(s) 80, 186
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 176, 283, 455
BstAUI TGTACA 1 cut(s) 471
BstDSI CCRYGG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 579
BstKTI GATC 4 cut(s) 336, 490, 517, 543
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 4 cut(s) 333, 487, 514, 540
BstMWI GCNNNNNNNGC 1 cut(s) 579
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 244, 520
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 225, 523
BstXI CCANNNNNNTGG 2 cut(s) 193, 330
BtgI CCRYGG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 3 cut(s) 46, 181, 315
CciI TCATGA 2 cut(s) 336, 430
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 5 cut(s) 16, 165, 328, 442, 472
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 187, 337, 431
CviJI RGCY 1 cut(s) 101
CviKI_1 RGCY 1 cut(s) 101
CviQI GTAC 5 cut(s) 16, 165, 328, 442, 472
DpnI GATC 4 cut(s) 335, 489, 516, 542
DpnII GATC 4 cut(s) 333, 487, 514, 540
DraI TTTAAA 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 80, 186
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 80, 186
ErhI CCWWGG 2 cut(s) 80, 186
FaeI CATG 3 cut(s) 190, 340, 434
FaqI GGGAC 2 cut(s) 371, 504
FatI CATG 3 cut(s) 186, 336, 430
Fnu4HI GCNGC 4 cut(s) 239, 242, 537, 580
Fsp4HI GCNGC 4 cut(s) 239, 242, 537, 580
FspBI CTAG 1 cut(s) 390
GluI GCNGC 4 cut(s) 239, 242, 537, 580
HapII CCGG 2 cut(s) 60, 522
Hin1II CATG 3 cut(s) 190, 340, 434
HinfI GANTC 3 cut(s) 72, 359, 367
HpaII CCGG 2 cut(s) 60, 522
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 228, 259, 279
Hpy188III TCNNGA 5 cut(s) 323, 337, 396, 418, 431
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 254, 307
HpyCH4III ACNGT 3 cut(s) 176, 283, 455
HpyCH4V TGCA 3 cut(s) 179, 212, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 579
Hsp92II CATG 3 cut(s) 190, 340, 434
Kzo9I GATC 4 cut(s) 333, 487, 514, 540
LpnPI CCDG 9 cut(s) 73, 179, 231, 258, 316, 336, 403, 422, 535
Lsp1109I GCAGC 2 cut(s) 225, 523
LweI GCATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 402
MalI GATC 4 cut(s) 335, 489, 516, 542
MboI GATC 4 cut(s) 333, 487, 514, 540
MboII GAAGA 1 cut(s) 497
MfeI CAATTG 1 cut(s) 568
MluCI AATT 4 cut(s) 253, 475, 525, 568
MlyI GAGTC 2 cut(s) 81, 361
MnlI CCTC 2 cut(s) 118, 208
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 3 cut(s) 110, 480, 528
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 2 cut(s) 60, 522
MspR9I CCNGG 2 cut(s) 246, 522
MunI CAATTG 1 cut(s) 568
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 1 cut(s) 579
NciI CCSGG 1 cut(s) 522
NcoI CCATGG 1 cut(s) 186
NdeII GATC 4 cut(s) 333, 487, 514, 540
NlaIII CATG 3 cut(s) 190, 340, 434
NlaIV GGNNCC 1 cut(s) 321
PagI TCATGA 2 cut(s) 336, 430
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 520
PinAI ACCGGT 1 cut(s) 59
PkrI GCNGC 4 cut(s) 240, 243, 538, 581
PleI GAGTC 2 cut(s) 80, 361
PpsI GAGTC 2 cut(s) 80, 361
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 320
RsaI GTAC 5 cut(s) 17, 166, 329, 443, 473
RsaNI GTAC 5 cut(s) 16, 165, 328, 442, 472
SaqAI TTAA 3 cut(s) 110, 480, 528
SatI GCNGC 4 cut(s) 239, 242, 537, 580
Sau3AI GATC 4 cut(s) 333, 487, 514, 540
Sau96I GGNCC 1 cut(s) 320
ScaI AGTACT 2 cut(s) 17, 329
SchI GAGTC 2 cut(s) 81, 361
ScrFI CCNGG 2 cut(s) 246, 522
SetI ASST 2 cut(s) 265, 415
SfaNI GCATC 1 cut(s) 188
SinI GGWCC 1 cut(s) 320
Sse9I AATT 4 cut(s) 253, 475, 525, 568
SsiI CCGC 3 cut(s) 236, 242, 579
SspI AATATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 244, 520
StyI CCWWGG 2 cut(s) 80, 186
TaaI ACNGT 3 cut(s) 176, 283, 455
TaqI TCGA 1 cut(s) 447
TasI AATT 4 cut(s) 253, 475, 525, 568
TatI WGTACW 4 cut(s) 15, 327, 441, 471
TauI GCSGC 2 cut(s) 244, 582
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 110, 480, 528
Tru9I TTAA 3 cut(s) 110, 480, 528
TscAI CASTG 3 cut(s) 46, 181, 315
TseI GCWGC 2 cut(s) 238, 536
TspDTI ATGAA 5 cut(s) 42, 140, 353, 447, 498
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 3 cut(s) 46, 181, 315
VpaK11BI GGWCC 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 2 cut(s) 17, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.