Rroxscaffold_2G00150590

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000111
Physical Location & Seq
Reverse (-)
87961038 .. 87962005
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150590.1

Sequence Viewer

Length: 564 bp
ATGATGATGTCGCCGGAACGTTGCAGATCGAAGCCGAGCTCCATCGAAGCGATTGATCCGAGCTGGGGAGGAAAAGTAATGAGTTTGGAACCATTCGAGATTTTTATTTACGTGAAGATGGAAGACCATGGCCAGTTGATGGGCCTGCAAAATGTGGACCTTCCACCCGAGATCGTGTATGAAATTATTTCAAGGCTACCGGTGAAGCCCTTGTGCCGCCTCAAGTGTGTATCAAAGCCATGGCGGTCCCTAATCTCCCATCCCGATTTCGTTGCAAAGTACTCCAAAGCTGTTGAGAATAAGGATGTATTCTTCCAAAGACGGCGCCTCCTGTTTACTTTTGCTTCCCCCGGACATCATTGGCTTTACTCTTTGGATCTGAACCAGTATCTCAATGAGAATCATAATGTTGATGTTGATAGTTTAGTAGCGCACCCACCGAGCTCGACTTTGTTTACAATCATCTTCCAAATGGTGGACGGGGTTGGGTTCCCTTTGTCCATTATTCCTGCTATGGCTTGTTCTTGTCCAACTTATGTTATGGGGACTGCAGTTTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

187

Amino Acids

21.18

Weight (kDa)

6.58

Isoelectric Point (pI)

55.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 53 - 90 1.4e-10 F-box domain
F-box-like PF12937 53 - 88 2.2e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AccB7I CCANNNNNTGG 2 cut(s) 139, 475
AciI CCGC 2 cut(s) 217, 244
AclI AACGTT 1 cut(s) 19
AclWI GGATC 2 cut(s) 50, 384
AcoI YGGCCR 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 3 cut(s) 65, 139, 475
AgeI ACCGGT 1 cut(s) 199
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 4 cut(s) 39, 63, 290, 444
AluI AGCT 4 cut(s) 39, 63, 290, 444
Alw21I GWGCWC 2 cut(s) 41, 446
AlwI GGATC 2 cut(s) 50, 384
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 130, 142
AsiGI ACCGGT 1 cut(s) 199
AspLEI GCGC 2 cut(s) 327, 433
AspS9I GGNCC 3 cut(s) 142, 157, 246
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 157, 246
BalI TGGCCA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 324
BanII GRGCYC 2 cut(s) 41, 446
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 41, 446
BccI CCATC 4 cut(s) 50, 112, 133, 267
BceAI ACGGC 1 cut(s) 338
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BcnI CCSGG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 157, 246
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 142, 157, 246
BmiI GGNNCC 4 cut(s) 90, 248, 326, 491
BmrFI CCNGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 127, 239, 349
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 312, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 139, 475
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 133, 385
BseDI CCNNGG 3 cut(s) 127, 239, 349
BseGI GGATG 2 cut(s) 259, 310
BseLI CCNNNNNNNGG 3 cut(s) 65, 139, 475
BseNI ACTGG 2 cut(s) 133, 385
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 2 cut(s) 132, 144
BshNI GGYRCC 1 cut(s) 324
BshTI ACCGGT 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 41, 446
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 3 cut(s) 14, 200, 351
BslFI GGGAC 2 cut(s) 232, 559
BslI CCNNNNNNNGG 3 cut(s) 65, 139, 475
BsmFI GGGAC 2 cut(s) 232, 559
BsnI GGCC 2 cut(s) 132, 144
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 41, 446
Bsp143I GATC 4 cut(s) 26, 55, 171, 376
Bsp19I CCATGG 2 cut(s) 127, 239
BspACI CCGC 2 cut(s) 217, 244
BspANI GGCC 2 cut(s) 132, 144
BspLI GGNNCC 4 cut(s) 90, 248, 326, 491
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 2 cut(s) 50, 384
BspT107I GGYRCC 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 2 cut(s) 133, 385
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 127, 239, 349
BssMI GATC 4 cut(s) 26, 55, 171, 376
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 2 cut(s) 127, 239
BstACI GRCGYC 1 cut(s) 325
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 146
BstDSI CCRYGG 2 cut(s) 127, 239
BstF5I GGATG 2 cut(s) 259, 310
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 327, 433
BstKTI GATC 4 cut(s) 29, 58, 174, 379
BstMBI GATC 4 cut(s) 26, 55, 171, 376
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 549
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 2 cut(s) 132, 144
BtgI CCRYGG 2 cut(s) 127, 239
BtsCI GGATG 2 cut(s) 259, 310
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 2 cut(s) 327, 433
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 142, 157, 246
Csp6I GTAC 1 cut(s) 280
CspAI ACCGGT 1 cut(s) 199
CviAII CATG 2 cut(s) 128, 240
CviQI GTAC 1 cut(s) 280
DinI GGCGCC 1 cut(s) 326
DpnI GATC 4 cut(s) 28, 57, 173, 378
DpnII GATC 4 cut(s) 26, 55, 171, 376
EaeI YGGCCR 1 cut(s) 130
Ecl136II GAGCTC 2 cut(s) 39, 444
Eco130I CCWWGG 2 cut(s) 127, 239
Eco24I GRGCYC 2 cut(s) 41, 446
Eco47I GGWCC 2 cut(s) 157, 246
Eco53kI GAGCTC 2 cut(s) 39, 444
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 2 cut(s) 39, 444
EcoT14I CCWWGG 2 cut(s) 127, 239
EcoT38I GRGCYC 2 cut(s) 41, 446
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
ErhI CCWWGG 2 cut(s) 127, 239
FaeI CATG 2 cut(s) 131, 243
FaiI YATR 7 cut(s) 129, 180, 241, 405, 515, 537, 542
FaqI GGGAC 2 cut(s) 232, 559
FatI CATG 2 cut(s) 127, 239
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 2 cut(s) 246, 317
FriOI GRGCYC 2 cut(s) 41, 446
Fsp4HI GCNGC 1 cut(s) 217
GlaI GCGC 2 cut(s) 326, 432
GluI GCNGC 1 cut(s) 217
GsaI CCCAGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 2 cut(s) 132, 144
HapII CCGG 3 cut(s) 14, 200, 351
HhaI GCGC 2 cut(s) 327, 433
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 2 cut(s) 131, 243
Hin6I GCGC 2 cut(s) 325, 431
HinP1I GCGC 2 cut(s) 325, 431
HinfI GANTC 1 cut(s) 400
HpaII CCGG 3 cut(s) 14, 200, 351
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 4 cut(s) 157, 336, 456, 478
Hpy188I TCNGA 2 cut(s) 60, 381
Hpy188III TCNNGA 2 cut(s) 97, 263
Hpy8I GTNNAC 4 cut(s) 157, 336, 456, 478
HpyAV CCTTC 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 19, 111
HpyCH4V TGCA 4 cut(s) 24, 148, 275, 551
HpySE526I ACGT 2 cut(s) 19, 111
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 2 cut(s) 131, 243
HspAI GCGC 2 cut(s) 325, 431
KasI GGCGCC 1 cut(s) 324
Kzo9I GATC 4 cut(s) 26, 55, 171, 376
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 9 cut(s) 27, 49, 146, 158, 213, 344, 364, 398, 522
MaeII ACGT 2 cut(s) 19, 111
MalI GATC 4 cut(s) 28, 57, 173, 378
MboI GATC 4 cut(s) 26, 55, 171, 376
MboII GAAGA 4 cut(s) 127, 134, 304, 457
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 41, 446
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 132
Mly113I GGCGCC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 554
MnlI CCTC 3 cut(s) 62, 230, 338
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 132
MspI CCGG 3 cut(s) 14, 200, 351
MspR9I CCNGG 1 cut(s) 351
NarI GGCGCC 1 cut(s) 325
NciI CCSGG 1 cut(s) 351
NcoI CCATGG 2 cut(s) 127, 239
NdeII GATC 4 cut(s) 26, 55, 171, 376
NlaIII CATG 2 cut(s) 131, 243
NlaIV GGNNCC 4 cut(s) 90, 248, 326, 491
NmeAIII GCCGAG 1 cut(s) 60
PfeI GAWTC 1 cut(s) 400
PflMI CCANNNNNTGG 2 cut(s) 139, 475
PinAI ACCGGT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 218
PluTI GGCGCC 1 cut(s) 328
Ppu21I YACGTR 1 cut(s) 112
Psp124BI GAGCTC 2 cut(s) 41, 446
Psp1406I AACGTT 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 63
PspN4I GGNNCC 4 cut(s) 90, 248, 326, 491
PspPI GGNCC 3 cut(s) 142, 157, 246
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SacI GAGCTC 2 cut(s) 41, 446
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 4 cut(s) 26, 55, 171, 376
Sau96I GGNCC 3 cut(s) 142, 157, 246
ScaI AGTACT 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 2 cut(s) 41, 446
SetI ASST 7 cut(s) 22, 41, 65, 114, 162, 292, 446
SfcI CTRYAG 1 cut(s) 549
SfoI GGCGCC 1 cut(s) 326
SinI GGWCC 2 cut(s) 157, 246
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 183
SsiI CCGC 2 cut(s) 217, 244
SspDI GGCGCC 1 cut(s) 324
SstI GAGCTC 2 cut(s) 41, 446
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 2 cut(s) 127, 239
TaiI ACGT 2 cut(s) 22, 114
TaqI TCGA 4 cut(s) 29, 45, 96, 446
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 195
Van91I CCANNNNNTGG 2 cut(s) 139, 475
VpaK11BI GGWCC 2 cut(s) 157, 246
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.