MD11G1131100.v1.1

F-box domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
11861950 .. 11863885
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1131100.v1.1.491

Sequence Viewer

Length: 459 bp
ATGCACCTCGACGAGTTTCTCGATCATAATGATACCGATGAACAGAATTTAGTATCAGCCATCGAGCATGAGTATGTTTGTAGCGAAGTGTCAGGTATTTTCGTTTCCTTGTGTTCCTGCAACGACTTGTTATGCATGTTGTGTGACTCAAGGTTATATTTGGTTGACCCCTCCACCAAGGAAACCAAGAAACTGCCAGAAATACCAAAAGAAGAGAATTATTGGAATTCAGTCAAGGTATATGGGGTTGGATTTGATCGTTCCGCTTATGAACACAAGGTGGTTACGGGAATCTACAATAAACACGATCGCTTAACCAACCCCTTCATCGATGATTTCGATGAAGGGGTTGTGTTTAGTGTTTATACGCTGGAAACCGATTCTTGGAGAAAGATTGAGAGATTGTTTCCCTACATTACTAGTCAACAAGGAATTATGCTGAATGGAGATCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.62

Weight (kDa)

4.62

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 12 - 151 1.5e-10 F-box associated beta propeller domain
FBA_1 PF07734 35 - 152 8.8e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 264
AcsI RAATTY 2 cut(s) 46, 226
AdeI CACNNNGTG 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 384
AhlI ACTAGT 1 cut(s) 419
ApoI RAATTY 2 cut(s) 46, 226
BccI CCATC 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 1 cut(s) 420
BglII AGATCT 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 384
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 384
Bsh1285I CGRYCG 1 cut(s) 310
BshVI ATCGAT 1 cut(s) 330
BsiEI CGRYCG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 384
Bsp143I GATC 4 cut(s) 22, 256, 307, 448
BspACI CCGC 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 4 cut(s) 22, 256, 307, 448
BssT1I CCWWGG 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 207
BstKTI GATC 4 cut(s) 25, 259, 310, 451
BstMBI GATC 4 cut(s) 22, 256, 307, 448
BstMCI CGRYCG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 330
BsuTUI ATCGAT 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 330
CviAII CATG 2 cut(s) 68, 136
CviJI RGCY 1 cut(s) 59
CviKI_1 RGCY 1 cut(s) 59
DpnI GATC 4 cut(s) 24, 258, 309, 450
DpnII GATC 4 cut(s) 22, 256, 307, 448
DraIII CACNNNGTG 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 71, 139
FatI CATG 2 cut(s) 67, 135
FspBI CTAG 1 cut(s) 420
Hin1II CATG 2 cut(s) 71, 139
HincII GTYRAC 2 cut(s) 166, 425
HindII GTYRAC 2 cut(s) 166, 425
HinfI GANTC 3 cut(s) 146, 291, 380
Hpy166II GTNNAC 2 cut(s) 166, 425
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 2 cut(s) 166, 425
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 334, 338
HpyCH4V TGCA 3 cut(s) 4, 120, 135
Hsp92II CATG 2 cut(s) 71, 139
Kzo9I GATC 4 cut(s) 22, 256, 307, 448
LpnPI CCDG 4 cut(s) 78, 130, 210, 356
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 143, 283
MalI GATC 4 cut(s) 24, 258, 309, 450
MboI GATC 4 cut(s) 22, 256, 307, 448
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 448
MluCI AATT 4 cut(s) 46, 217, 226, 432
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 2 cut(s) 17, 181
Mph1103I ATGCAT 1 cut(s) 137
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 72
NdeII GATC 4 cut(s) 22, 256, 307, 448
NlaIII CATG 2 cut(s) 71, 139
NmuCI GTSAC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 137
NspI RCATGY 1 cut(s) 139
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 336
PfeI GAWTC 2 cut(s) 291, 380
Ple19I CGATCG 1 cut(s) 310
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsuI RGATCY 1 cut(s) 448
PvuI CGATCG 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 4 cut(s) 22, 256, 307, 448
SchI GAGTC 1 cut(s) 140
SetI ASST 5 cut(s) 9, 97, 155, 240, 282
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 4 cut(s) 46, 217, 226, 432
SsiI CCGC 1 cut(s) 264
SspMI CTAG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 5 cut(s) 9, 21, 63, 330, 339
TasI AATT 4 cut(s) 46, 217, 226, 432
TfiI GAWTC 2 cut(s) 291, 380
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 4 cut(s) 54, 285, 316, 357
XapI RAATTY 2 cut(s) 46, 226
XceI RCATGY 1 cut(s) 139
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.