Rmu_sc0003333.1_g000005

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003333.1
OG0000111
Physical Location & Seq
Reverse (-)
13317 .. 13814
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003333.1_g000005.1.cds

Sequence Viewer

Length: 498 bp
atggaagaccgtggcgagcctaacttgtaccttccaccagagattatggatgatattcttttatggctaccagccaagtccttgtgccgcttcaagtgtgtatcaaaaccatggaaagccatgatatcggacacccattttgttaagaggcacatcaacagagccactgagaacaaggatgtattcctccaaagaagaagagtgatattcaccgacgcggcagacaatggtctttatactttggacttagatgagtttctcaaaaatcataaacatgtgcttcttaagaaccatgcggctgatacagataatggtattgataacgatgatgatgaagaagatgaacaagtagctgccactgagctcgattatatttaccgtgagcagccaagtgttcgagttccgtttttccattcctgcaatggcctgattctcctcgagttatctgatttggagttatatttggttaaccctgcaacaagtgaatcaagcatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

165

Amino Acids

19.09

Weight (kDa)

4.75

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 218
AciI CCGC 3 cut(s) 88, 218, 296
AfaI GTAC 1 cut(s) 29
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 2 cut(s) 353, 364
AluI AGCT 2 cut(s) 353, 364
Alw21I GWGCWC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 353, 385
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 437
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 340, 397
BfaI CTAG 1 cut(s) 496
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 5 cut(s) 88, 219, 297, 354, 386
BlsI GCNGC 5 cut(s) 89, 220, 298, 355, 387
BmeT110I CYCGRG 1 cut(s) 437
BoxI GACNNNNGTC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 10, 110
Bse3DI GCAATG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 10, 110
BseGI GGATG 2 cut(s) 55, 184
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 159, 351
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 2 cut(s) 340, 397
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 437
BsnI GGCC 1 cut(s) 426
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 3 cut(s) 88, 218, 296
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 160, 352
BspFNI CGCG 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 10, 110
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 11, 380
Bst6I CTCTTC 1 cut(s) 193
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 168, 247, 360
BstDSI CCRYGG 2 cut(s) 10, 110
BstF5I GGATG 2 cut(s) 55, 184
BstFNI CGCG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 278
BstPAI GACNNNNGTC 1 cut(s) 228
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 340, 397
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 2 cut(s) 10, 110
BtsCI GGATG 2 cut(s) 55, 184
BtsIMutI CAGTG 2 cut(s) 165, 357
Cac8I GCNNGC 1 cut(s) 17
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 28
CviAII CATG 4 cut(s) 111, 121, 275, 293
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 168, 247, 360
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 364
EcoRV GATATC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 4 cut(s) 114, 124, 278, 296
FatI CATG 4 cut(s) 110, 120, 274, 292
Fnu4HI GCNGC 5 cut(s) 88, 219, 297, 354, 386
FokI GGATG 2 cut(s) 62, 191
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 5 cut(s) 88, 219, 297, 354, 386
FspBI CTAG 1 cut(s) 496
GluI GCNGC 5 cut(s) 88, 219, 297, 354, 386
HaeIII GGCC 1 cut(s) 426
HgaI GACGC 1 cut(s) 224
Hin1II CATG 4 cut(s) 114, 124, 278, 296
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 2 cut(s) 430, 485
HpaI GTTAAC 1 cut(s) 469
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 2 cut(s) 130, 448
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 2 cut(s) 11, 380
HpyCH4V TGCA 2 cut(s) 420, 476
HpyF3I CTNAG 3 cut(s) 168, 247, 360
Hsp92II CATG 4 cut(s) 114, 124, 278, 296
KspAI GTTAAC 1 cut(s) 469
LpnPI CCDG 5 cut(s) 51, 84, 430, 440, 486
Lsp1109I GCAGC 2 cut(s) 340, 397
MaeI CTAG 1 cut(s) 496
MboII GAAGA 5 cut(s) 17, 207, 210, 347, 350
MhlI GDGCHC 1 cut(s) 366
MnlI CCTC 3 cut(s) 141, 197, 446
MseI TTAA 3 cut(s) 144, 285, 468
MslI CAYNNNNRTG 1 cut(s) 273
MspCI CTTAAG 1 cut(s) 284
MvnI CGCG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 110
NlaIII CATG 4 cut(s) 114, 124, 278, 296
NspI RCATGY 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 437
PciI ACATGT 1 cut(s) 274
PfeI GAWTC 2 cut(s) 430, 485
PkrI GCNGC 5 cut(s) 89, 220, 298, 355, 387
PscI ACATGT 1 cut(s) 274
PshAI GACNNNNGTC 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 366
PspXI VCTCGAGB 1 cut(s) 437
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 144, 285, 468
SatI GCNGC 5 cut(s) 88, 219, 297, 354, 386
SduI GDGCHC 1 cut(s) 366
SetI ASST 3 cut(s) 33, 355, 366
Sfr274I CTCGAG 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 284, 437
SmoI CTYRAG 2 cut(s) 284, 437
SsiI CCGC 3 cut(s) 88, 218, 296
SspMI CTAG 1 cut(s) 496
SstI GAGCTC 1 cut(s) 366
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 11, 380
TaqI TCGA 3 cut(s) 366, 397, 438
TauI GCSGC 3 cut(s) 90, 221, 299
TfiI GAWTC 2 cut(s) 430, 485
Tru1I TTAA 3 cut(s) 144, 285, 468
Tru9I TTAA 3 cut(s) 144, 285, 468
TscAI CASTG 2 cut(s) 172, 364
TseI GCWGC 2 cut(s) 353, 385
TspDTI ATGAA 2 cut(s) 348, 357
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 2 cut(s) 172, 364
Vha464I CTTAAG 1 cut(s) 284
XceI RCATGY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 437
XspI CTAG 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.