RLG00000036284

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000111
Physical Location & Seq
Reverse (-)
78444396 .. 78444800
405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036284

Sequence Viewer

Length: 405 bp
ATGGTTCTGGTGTCTTTTCTTGTTGCAGAGGAAATGGTTCGGACTATTCCGCTGCCGCGTGGTTTCAATTCTGAAGGTGCTGATTATTATCTGATTGTCTTTAGGGAATGTCTATGTGTGGCAGTGAAGGGGGGTCCAGAGTATTGGATCATGAACGAATATGGAGTGAGAGAATCTTGGACTCAACAAAGAATGTCCGTCCCTAGTTCCCGATGGTTACATTTAGGTTTTAGGAAAAACAATCATGAACTGGTGTACTTCGATGACCGTCAGCGTTTGGTTATGTACAATTTTAATGAAGATCGCTTTTGCAATCTACCCTTTTGTGATCGTCCCGGAATTAAGTTTGCTGCGATCTATGTGGAGACCATTTTTTCACTCAATTGCTATCGTGGCATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

135

Amino Acids

15.87

Weight (kDa)

6.12

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 58
AciI CCGC 2 cut(s) 50, 56
AclWI GGATC 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 257, 287
AgsI TTSAA 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 52, 350
Asp700I GAANNNNTTC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 39, 337
BccI CCATC 1 cut(s) 207
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 53, 56, 351
BlsI GCNGC 3 cut(s) 54, 57, 352
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 87
BseNI ACTGG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 39, 337
Bsh1236I CGCG 1 cut(s) 58
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 185, 318
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 2 cut(s) 185, 318
Bso31I GGTCTC 1 cut(s) 359
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 4 cut(s) 147, 301, 328, 354
BspACI CCGC 2 cut(s) 50, 56
BspFNI CGCG 1 cut(s) 58
BspHI TCATGA 2 cut(s) 150, 244
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 255
BssMI GATC 4 cut(s) 147, 301, 328, 354
Bst4CI ACNGT 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 285
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 4 cut(s) 150, 304, 331, 357
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 4 cut(s) 147, 301, 328, 354
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 334
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 39, 337
BstXI CCANNNNNNTGG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
CciI TCATGA 2 cut(s) 150, 244
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 256, 286
CviAII CATG 2 cut(s) 151, 245
CviQI GTAC 2 cut(s) 256, 286
DpnI GATC 4 cut(s) 149, 303, 330, 356
DpnII GATC 4 cut(s) 147, 301, 328, 354
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 93
FaeI CATG 2 cut(s) 154, 248
FaiI YATR 6 cut(s) 115, 152, 162, 246, 284, 360
FaqI GGGAC 2 cut(s) 185, 318
FatI CATG 2 cut(s) 150, 244
Fnu4HI GCNGC 3 cut(s) 53, 56, 351
Fsp4HI GCNGC 3 cut(s) 53, 56, 351
FspBI CTAG 1 cut(s) 204
GluI GCNGC 3 cut(s) 53, 56, 351
HapII CCGG 1 cut(s) 336
Hin1II CATG 2 cut(s) 154, 248
HinfI GANTC 2 cut(s) 173, 181
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 42, 73, 93
Hpy188III TCNNGA 4 cut(s) 137, 151, 210, 245
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 68, 121
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 2 cut(s) 26, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
Hsp92II CATG 2 cut(s) 154, 248
Kzo9I GATC 4 cut(s) 147, 301, 328, 354
LpnPI CCDG 3 cut(s) 150, 236, 349
Lsp1109I GCAGC 2 cut(s) 39, 337
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 216
MalI GATC 4 cut(s) 149, 303, 330, 356
MboI GATC 4 cut(s) 147, 301, 328, 354
MboII GAAGA 1 cut(s) 311
MfeI CAATTG 1 cut(s) 382
MluCI AATT 4 cut(s) 67, 289, 339, 382
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 2 cut(s) 294, 342
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 382
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 393
NciI CCSGG 1 cut(s) 336
NdeII GATC 4 cut(s) 147, 301, 328, 354
NlaIII CATG 2 cut(s) 154, 248
NlaIV GGNNCC 1 cut(s) 135
PagI TCATGA 2 cut(s) 150, 244
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 3 cut(s) 54, 57, 352
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 134
RsaI GTAC 2 cut(s) 257, 287
RsaNI GTAC 2 cut(s) 256, 286
SaqAI TTAA 2 cut(s) 294, 342
SatI GCNGC 3 cut(s) 53, 56, 351
Sau3AI GATC 4 cut(s) 147, 301, 328, 354
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 336
SetI ASST 2 cut(s) 79, 229
SinI GGWCC 1 cut(s) 134
Sse9I AATT 4 cut(s) 67, 289, 339, 382
SsiI CCGC 2 cut(s) 50, 56
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 261
TasI AATT 4 cut(s) 67, 289, 339, 382
TatI WGTACW 2 cut(s) 255, 285
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 294, 342
Tru9I TTAA 2 cut(s) 294, 342
TscAI CASTG 1 cut(s) 129
TseI GCWGC 2 cut(s) 52, 350
TspDTI ATGAA 3 cut(s) 167, 261, 312
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.