FvH4_1g05230

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000111
Physical Location & Seq
Forward (+)
2781327 .. 2783371
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05230.t1

Sequence Viewer

Length: 732 bp
ATGGCAGACAAGAGCAAGTATAAAGCTATTGAGGATAAGGGACAGCGTCTTGTATTTGTTGACCATGCACGTAAACGCCTCTACACTTTGGACATTGTTCAGTATCTCAACAAGAATCTTGAACTGATGAGGAATGATAAAGCTGATGATGTGGATTATGTTGCAAAAGCCACTGAGCTCGACTTTGTTCGTCGCAATATTGGAAGTGGTTGGGTTCCTGTTGTGCTTTCCTGCAAGAGCTTCTTGATGTGCAGGTCGGATTCTGGGTTCCATTTGATCAACCCTGCAACCGAGGAATGGAAGAAAGTACCAAAGACACCACTGACAAAGATGTCTTTTTCTTGGGAGCTATATGGGTTTGGATTTGATGAGTCCACTAGTCAGTACAAGGTGATTGAAGGGAAGGGGGGCAATGATGGGTTTGTGTTTAGTGTTTATGCTTCCTTGACTGATTCTTGGCGAAAGATCGAGACTCTATACCCCTACAAACAAACTCGTGTTTGTAGGAAGGAAGGGATGTTGCTGAATGGGGCTGTTCATTGGTTGGTCAAGCGAGATGGATCCTTGGTGATTATATCTTTCCTTTTAGCAGAGGAGGAGGTTAGAGAAATCCAAGTACCGCCTAGTTGCAGCACTGGTATAGTAGAACTGGGCGTTTTCAGAGATCAGCTATGTATAACATCAATTGCATCATCCTTTCCAGAAAAACATATAATAAGTTTTGGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

244

Amino Acids

27.66

Weight (kDa)

8.18

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 74 - 223 1.4e-15 F-box associated beta propeller domain
FBA_3 PF08268 77 - 211 7.3e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 243
AciI CCGC 1 cut(s) 620
AclWI GGATC 2 cut(s) 555, 568
AfaI GTAC 3 cut(s) 309, 386, 618
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 2 cut(s) 122, 398
AhlI ACTAGT 1 cut(s) 377
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 6 cut(s) 26, 143, 178, 240, 349, 670
AluI AGCT 6 cut(s) 26, 143, 178, 240, 349, 670
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 555, 568
ApeKI GCWGC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 403, 580
BamHI GGATCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 180
BauI CACGAG 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 642
BccI CCATC 2 cut(s) 410, 551
BclI TGATCA 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 464
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 2 cut(s) 378, 624
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 631
BlsI GCNGC 1 cut(s) 632
BmiI GGNNCC 3 cut(s) 216, 269, 562
BmrI ACTGGG 1 cut(s) 659
BmsI GCATC 1 cut(s) 698
BmuI ACTGGG 1 cut(s) 659
BsaAI YACGTR 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 291, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 640, 654
Bse3DI GCAATG 1 cut(s) 418
BseDI CCNNGG 2 cut(s) 291, 564
BseGI GGATG 2 cut(s) 522, 692
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 640, 654
BseRI GAGGAG 2 cut(s) 608, 611
BseXI GCAGC 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 180
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 4 cut(s) 276, 465, 560, 664
BspACI CCGC 1 cut(s) 620
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 3 cut(s) 216, 269, 562
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 2 cut(s) 555, 568
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 2 cut(s) 640, 654
BssECI CCNNGG 2 cut(s) 291, 564
BssMI GATC 4 cut(s) 276, 465, 560, 664
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 495
BstBAI YACGTR 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 522, 692
BstKTI GATC 4 cut(s) 279, 468, 563, 667
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 4 cut(s) 276, 465, 560, 664
BstV1I GCAGC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BtsCI GGATG 2 cut(s) 522, 692
BtsIMutI CAGTG 3 cut(s) 171, 320, 633
BveI ACCTGC 1 cut(s) 243
CseI GACGC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 308, 385, 617
CviAII CATG 1 cut(s) 65
CviJI RGCY 8 cut(s) 26, 143, 170, 178, 240, 349, 533, 670
CviKI_1 RGCY 8 cut(s) 26, 143, 170, 178, 240, 349, 533, 670
CviQI GTAC 3 cut(s) 308, 385, 617
DdeI CTNAG 1 cut(s) 174
DpnI GATC 4 cut(s) 278, 467, 562, 666
DpnII GATC 4 cut(s) 276, 465, 560, 664
DrdI GACNNNNNNGTC 1 cut(s) 331
DseDI GACNNNNNNGTC 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 1 cut(s) 54
FatI CATG 1 cut(s) 64
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 631
FokI GGATG 2 cut(s) 529, 679
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 631
FspBI CTAG 2 cut(s) 378, 624
GluI GCNGC 1 cut(s) 631
HgaI GACGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 5 cut(s) 115, 260, 371, 452, 472
HphI GGTGA 2 cut(s) 403, 580
Hpy166II GTNNAC 3 cut(s) 61, 74, 375
Hpy188I TCNGA 2 cut(s) 259, 662
Hpy188III TCNNGA 5 cut(s) 119, 244, 469, 701, 729
Hpy8I GTNNAC 3 cut(s) 61, 74, 375
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 392, 397, 502, 506
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 7 cut(s) 68, 164, 234, 252, 287, 630, 689
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 4 cut(s) 276, 465, 560, 664
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 8 cut(s) 231, 238, 244, 249, 297, 621, 635, 714
Lsp1109I GCAGC 1 cut(s) 642
LweI GCATC 1 cut(s) 698
MaeI CTAG 2 cut(s) 378, 624
MaeII ACGT 1 cut(s) 70
MalI GATC 4 cut(s) 278, 467, 562, 666
MboI GATC 4 cut(s) 276, 465, 560, 664
MboII GAAGA 1 cut(s) 313
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 684
MlyI GAGTC 2 cut(s) 380, 466
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 7 cut(s) 25, 89, 123, 286, 586, 589, 592
MunI CAATTG 1 cut(s) 684
NdeII GATC 4 cut(s) 276, 465, 560, 664
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 3 cut(s) 216, 269, 562
PfeI GAWTC 3 cut(s) 115, 260, 452
PflFI GACNNNGTC 1 cut(s) 45
PkrI GCNGC 1 cut(s) 632
PleI GAGTC 2 cut(s) 379, 466
PpsI GAGTC 2 cut(s) 379, 466
Ppu21I YACGTR 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 216, 269, 562
PsuI RGATCY 1 cut(s) 560
PsyI GACNNNGTC 1 cut(s) 45
RsaI GTAC 3 cut(s) 309, 386, 618
RsaNI GTAC 3 cut(s) 308, 385, 617
SacI GAGCTC 1 cut(s) 180
SatI GCNGC 1 cut(s) 631
Sau3AI GATC 4 cut(s) 276, 465, 560, 664
SchI GAGTC 2 cut(s) 380, 466
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 1 cut(s) 698
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 1 cut(s) 684
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 199
SspMI CTAG 2 cut(s) 378, 624
SstI GAGCTC 1 cut(s) 180
StyI CCWWGG 1 cut(s) 564
TaiI ACGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 180, 468
TasI AATT 1 cut(s) 684
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 3 cut(s) 115, 260, 452
TscAI CASTG 3 cut(s) 178, 327, 640
TseI GCWGC 1 cut(s) 630
TspDTI ATGAA 1 cut(s) 527
TspRI CASTG 3 cut(s) 178, 327, 640
Tth111I GACNNNGTC 1 cut(s) 45
XspI CTAG 2 cut(s) 378, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.