RLG00000000695

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000111
Physical Location & Seq
Forward (+)
4002047 .. 4002805
759 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000695

Sequence Viewer

Length: 759 bp
ATGTGTGGGTTTTATTTGGTTAACCCTGCTACCAGGGAGATGAAGAAAGTACCAAAGACACCGTCATGGAGACCTATGAGGCTCTTTTGCATGAGCTTATGTGGATTTGGATTTGATTACTCCACCAATGAGTATAAGGTGGTTAACGGGCAGGTCTATCCTGATATCGATGAAATCGTATTTAGTGTCTATACATTGAAAACTGGTTCTTGGCGACAGATACAGTGCCCCTCTTCCTACCACGCTGATTCTTTTTATGGGATTTTTCTGAATGGAGCTATTCATTGGTCGGCAGACACAGCTGGAGATCGATCCTCTTCGGTGATCGTATCTTTTCTATTAGCAGAGGAGGAGGTTTGCGAAATTCAACTCCCACCCATCGATGCTGGTTGTTCAACAAATCTAGGAGTGTTTAGAGACTGCCTGTGTGTAACGCTCATCGGCATTGATAATCAAACATTTAATGAGTTTTGGGTCATGAAAGAATATAGGGTGAGCGAGTCTTGGACTAGAATGAGGGTCTCCATGCCATATCAGCAATTGTTACAATTTGGTTTCTCTACAAAATCTCATGATCTGATGGTGTGTGATAGTTCATTTGTTATGTACGACTTCAGAAAAGAAAGTTGTAGGAACCTTCCGATTCGTGATATACCTAAAGTTGGATATTGTATTGGGATTTATGTTGAGGGACTTTTTCCACTTATGGATCAAGAGCAGGACGAGAGATGTAAAGAAGATGAATCGAGTATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

253

Amino Acids

28.98

Weight (kDa)

4.9

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 204 1.4e-17 F-box associated beta propeller domain
FBA_3 PF08268 6 - 194 4.1e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AclWI GGATC 2 cut(s) 306, 717
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 598
AfaI GTAC 2 cut(s) 51, 608
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 3 cut(s) 199, 368, 396
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 3 cut(s) 96, 278, 302
AluI AGCT 3 cut(s) 96, 278, 302
Alw26I GTCTC 3 cut(s) 64, 411, 526
AlwI GGATC 2 cut(s) 306, 717
ApoI RAATTY 1 cut(s) 363
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AseI ATTAAT 1 cut(s) 753
AsuHPI GGTGA 2 cut(s) 334, 505
BaeGI GKGCMC 1 cut(s) 230
BccI CCATC 2 cut(s) 386, 574
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 3 cut(s) 64, 411, 526
BfaI CTAG 2 cut(s) 404, 510
BfuAI ACCTGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 635
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 324
Bsa29I ATCGAT 3 cut(s) 168, 310, 381
BsaI GGTCTC 2 cut(s) 64, 526
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 34
BseCI ATCGAT 3 cut(s) 168, 310, 381
BseDI CCNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 662
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 2 cut(s) 362, 365
BseSI GKGCMC 1 cut(s) 230
BshVI ATCGAT 3 cut(s) 168, 310, 381
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 3 cut(s) 64, 411, 526
BsmFI GGGAC 1 cut(s) 705
Bso31I GGTCTC 2 cut(s) 64, 526
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 5 cut(s) 307, 311, 324, 574, 709
BspDI ATCGAT 3 cut(s) 168, 310, 381
BspHI TCATGA 2 cut(s) 477, 571
BspLI GGNNCC 1 cut(s) 635
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 2 cut(s) 306, 717
BspTNI GGTCTC 2 cut(s) 64, 526
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 5 cut(s) 307, 311, 324, 574, 709
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 63, 225
Bst6I CTCTTC 2 cut(s) 238, 322
BstKTI GATC 5 cut(s) 310, 314, 327, 577, 712
BstMAI GTCTC 3 cut(s) 64, 411, 526
BstMBI GATC 5 cut(s) 307, 311, 324, 574, 709
BstMWI GCNNNNNNNGC 2 cut(s) 299, 535
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 230
Bsu15I ATCGAT 3 cut(s) 168, 310, 381
BsuTUI ATCGAT 3 cut(s) 168, 310, 381
BtsIMutI CAGTG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 142
CciI TCATGA 2 cut(s) 477, 571
ClaI ATCGAT 3 cut(s) 168, 310, 381
Csp6I GTAC 2 cut(s) 50, 607
CviAII CATG 5 cut(s) 66, 91, 478, 526, 572
CviJI RGCY 4 cut(s) 82, 96, 278, 302
CviKI_1 RGCY 4 cut(s) 82, 96, 278, 302
CviQI GTAC 2 cut(s) 50, 607
DpnI GATC 5 cut(s) 309, 313, 326, 576, 711
DpnII GATC 5 cut(s) 307, 311, 324, 574, 709
Eam1104I CTCTTC 2 cut(s) 238, 322
EarI CTCTTC 2 cut(s) 238, 322
Eco31I GGTCTC 2 cut(s) 64, 526
Eco32I GATATC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 32
EcoRV GATATC 1 cut(s) 166
FaeI CATG 5 cut(s) 69, 94, 481, 529, 575
FaqI GGGAC 1 cut(s) 705
FatI CATG 5 cut(s) 65, 90, 477, 525, 571
FspBI CTAG 2 cut(s) 404, 510
GsuI CTGGAG 1 cut(s) 324
Hin1II CATG 5 cut(s) 69, 94, 481, 529, 575
HincII GTYRAC 2 cut(s) 22, 145
HindII GTYRAC 2 cut(s) 22, 145
HinfI GANTC 4 cut(s) 248, 500, 643, 743
HpaI GTTAAC 2 cut(s) 22, 145
HphI GGTGA 2 cut(s) 334, 505
Hpy166II GTNNAC 2 cut(s) 22, 145
Hpy188I TCNGA 4 cut(s) 270, 579, 617, 642
Hpy188III TCNNGA 5 cut(s) 161, 478, 572, 647, 713
Hpy8I GTNNAC 2 cut(s) 22, 145
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 2 cut(s) 63, 225
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 535
Hsp92II CATG 5 cut(s) 69, 94, 481, 529, 575
KspAI GTTAAC 2 cut(s) 22, 145
Kzo9I GATC 5 cut(s) 307, 311, 324, 574, 709
LmnI GCTCC 1 cut(s) 275
LweI GCATC 1 cut(s) 373
MaeI CTAG 2 cut(s) 404, 510
MaeIII GTNAC 2 cut(s) 430, 543
MalI GATC 5 cut(s) 309, 313, 326, 576, 711
MboI GATC 5 cut(s) 307, 311, 324, 574, 709
MboII GAAGA 4 cut(s) 55, 225, 309, 749
MfeI CAATTG 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 4 cut(s) 363, 539, 548, 754
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 643
MnlI CCTC 8 cut(s) 72, 241, 325, 340, 343, 346, 510, 682
MseI TTAA 4 cut(s) 21, 144, 462, 753
MslI CAYNNNNRTG 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 299, 535
NdeII GATC 5 cut(s) 307, 311, 324, 574, 709
NlaIII CATG 5 cut(s) 69, 94, 481, 529, 575
NlaIV GGNNCC 1 cut(s) 635
PagI TCATGA 2 cut(s) 477, 571
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 3 cut(s) 248, 643, 743
PflFI GACNNNGTC 1 cut(s) 61
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PshBI ATTAAT 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 635
PsyI GACNNNGTC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 51, 608
RsaNI GTAC 2 cut(s) 50, 607
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 4 cut(s) 21, 144, 462, 753
Sau3AI GATC 5 cut(s) 307, 311, 324, 574, 709
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 230
SetI ASST 9 cut(s) 76, 98, 141, 156, 280, 304, 357, 639, 658
SfaNI GCATC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 4 cut(s) 363, 539, 548, 754
SspMI CTAG 2 cut(s) 404, 510
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 63, 225
TaqI TCGA 4 cut(s) 168, 310, 381, 746
TasI AATT 4 cut(s) 363, 539, 548, 754
TfiI GAWTC 3 cut(s) 248, 643, 743
Tru1I TTAA 4 cut(s) 21, 144, 462, 753
Tru9I TTAA 4 cut(s) 21, 144, 462, 753
TscAI CASTG 1 cut(s) 230
TspDTI ATGAA 6 cut(s) 56, 186, 272, 494, 585, 756
TspRI CASTG 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 61
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 1 cut(s) 363
XspI CTAG 2 cut(s) 404, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.