Rroxscaffold_3G00262430

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000111
Physical Location & Seq
Reverse (-)
56428787 .. 56430219
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262430.1

Sequence Viewer

Length: 774 bp
ATGAGGACGAGGCTAAGGAGAAACCCTGAAATCCCAGAGGAGATCATATATGAAATTCTTGCATATCTTCAGGTCAAGCCACTATGCAGGTTCAGATATAAGGGGAGACTTATTTTCACTGATGGGATAAATCAGTCACATTACTGTTTGGCCCTCGATGAGTTTCTGAATCGTATATATGCAGTTGATGCTGGTGTGGTCAGGGGGAACATAATTGAGGAGTTATATGTAGCTAACCCAGCCACCAGGGAATATAAGCAACTGCGGATGGCATGGCACCATATCCTGACCATGTTTTTGCCCCTACGGTTTGGATTTGATACTTCCATTGAGGATTACAAATTGGTTACCATGTGTGCATTGGAAGAGGGAATTGAGTTTGGTGTCTATACTTTGAAAACCGGTTCGTGGAGAATGATAAAAAGGTTATATCCTTACAAACTTCGGCGTTGTTTCGATGGGGTCCTGCTGAATGGAGGTCTTCATTGGTTTGTGCGTTCAGAAGTAGACGACGAAGTTCATGAAGAAGAAGATGATGATGAAGAAGAAGAAGGTGACCCGTGTGTGATTATATGTTTCAATTTAGAAGCTGAGGATGTCAGAGAAATTTCGCTACCATTTGATGAGTCCTCTGAAGCCGACAAATATAATGTGGCGCTCTACCAGGGACAGCTTGGATTACTAAACCAAAAGGAGCCAAACATTCGCCTGTACCAGCAAGAGGGTAGGGCAGAAGATTGCCCAACAATGAAGGATGTGGCGCCAGTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

257

Amino Acids

30.11

Weight (kDa)

4.81

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 57 - 234 7.7e-15 F-box associated beta propeller domain
FBA_1 PF07734 74 - 232 5.8e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AccB1I GGYRCC 2 cut(s) 276, 760
AccI GTMKAC 1 cut(s) 507
AciI CCGC 1 cut(s) 265
AcsI RAATTY 2 cut(s) 54, 606
AcuI CTGAAG 2 cut(s) 53, 654
AcyI GRCGYC 1 cut(s) 761
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 2 cut(s) 408, 721
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 2 cut(s) 397, 580
AjnI CCWGG 2 cut(s) 245, 663
AluBI AGCT 3 cut(s) 233, 590, 673
AluI AGCT 3 cut(s) 233, 590, 673
Alw26I GTCTC 1 cut(s) 100
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 54, 606
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
AsiGI ACCGGT 1 cut(s) 401
AspLEI GCGC 2 cut(s) 658, 763
AspS9I GGNCC 2 cut(s) 151, 463
AsuHPI GGTGA 1 cut(s) 566
AvaII GGWCC 1 cut(s) 463
BanI GGYRCC 2 cut(s) 276, 760
BbsI GAAGAC 1 cut(s) 473
BbvCI CCTCAGC 1 cut(s) 591
BccI CCATC 3 cut(s) 116, 262, 452
BciT130I CCWGG 2 cut(s) 247, 665
BcoDI GTCTC 1 cut(s) 100
BfoI RGCGCY 2 cut(s) 659, 764
BfuAI ACCTGC 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 247, 665
Bme18I GGWCC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 151, 463
BmiI GGNNCC 4 cut(s) 278, 464, 696, 762
BmrFI CCNGG 2 cut(s) 247, 665
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 473
Bpu10I CCTNAGC 2 cut(s) 14, 591
BsaHI GRCGYC 1 cut(s) 761
BsaJI CCNNGG 2 cut(s) 246, 664
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 721
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 764
BseBI CCWGG 2 cut(s) 247, 665
BseDI CCNNGG 2 cut(s) 246, 664
BseGI GGATG 3 cut(s) 273, 601, 760
BseLI CCNNNNNNNGG 2 cut(s) 408, 721
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 764
BseRI GAGGAG 2 cut(s) 53, 233
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 2 cut(s) 276, 760
BshTI ACCGGT 1 cut(s) 401
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 2 cut(s) 408, 721
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 583
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 278, 464, 696, 762
BspMI ACCTGC 1 cut(s) 78
BspT107I GGYRCC 2 cut(s) 276, 760
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 1 cut(s) 764
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 246, 664
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 247, 665
Bst4CI ACNGT 2 cut(s) 146, 309
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 761
BstAPI GCANNNNNTGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 14, 591
BstEII GGTNACC 2 cut(s) 346, 554
BstF5I GGATG 3 cut(s) 273, 601, 760
BstH2I RGCGCY 2 cut(s) 659, 764
BstHHI GCGC 2 cut(s) 658, 763
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 188, 239
BstNI CCWGG 2 cut(s) 247, 665
BstPI GGTNACC 2 cut(s) 346, 554
BstSCI CCNGG 2 cut(s) 245, 663
BstV2I GAAGAC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 3 cut(s) 273, 601, 760
BtsIMutI CAGTG 2 cut(s) 117, 771
BveI ACCTGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 520
CfoI GCGC 2 cut(s) 658, 763
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 151, 463
Csp6I GTAC 1 cut(s) 712
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 4 cut(s) 273, 292, 352, 521
CviJI RGCY 9 cut(s) 13, 79, 152, 233, 242, 590, 638, 673, 697
CviKI_1 RGCY 9 cut(s) 13, 79, 152, 233, 242, 590, 638, 673, 697
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 2 cut(s) 14, 591
DinI GGCGCC 1 cut(s) 762
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 53, 654
Eco91I GGTNACC 2 cut(s) 346, 554
EcoO109I RGGNCCY 1 cut(s) 463
EcoO65I GGTNACC 2 cut(s) 346, 554
EcoRII CCWGG 2 cut(s) 245, 663
EgeI GGCGCC 1 cut(s) 762
EheI GGCGCC 1 cut(s) 762
FaeI CATG 4 cut(s) 276, 295, 355, 524
FaqI GGGAC 1 cut(s) 681
FatI CATG 4 cut(s) 272, 291, 351, 520
FblI GTMKAC 1 cut(s) 507
FokI GGATG 3 cut(s) 280, 608, 767
GlaI GCGC 2 cut(s) 657, 762
GsaI CCCAGC 1 cut(s) 242
HaeII RGCGCY 2 cut(s) 659, 764
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 402
HhaI GCGC 2 cut(s) 658, 763
Hin1I GRCGYC 1 cut(s) 761
Hin1II CATG 4 cut(s) 276, 295, 355, 524
Hin6I GCGC 2 cut(s) 656, 761
HinP1I GCGC 2 cut(s) 656, 761
HinfI GANTC 2 cut(s) 169, 626
HpaII CCGG 1 cut(s) 402
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 5 cut(s) 95, 168, 502, 602, 634
Hpy188III TCNNGA 2 cut(s) 286, 521
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 2 cut(s) 545, 745
HpyCH4III ACNGT 2 cut(s) 146, 309
HpyCH4V TGCA 4 cut(s) 62, 87, 182, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 239
HpyF3I CTNAG 2 cut(s) 14, 591
Hsp92I GRCGYC 1 cut(s) 761
Hsp92II CATG 4 cut(s) 276, 295, 355, 524
HspAI GCGC 2 cut(s) 656, 761
KasI GGCGCC 1 cut(s) 760
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 694
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 3 cut(s) 135, 346, 554
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MluCI AATT 6 cut(s) 54, 213, 341, 372, 580, 606
Mly113I GGCGCC 1 cut(s) 761
MlyI GAGTC 1 cut(s) 635
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 247, 665
MvaI CCWGG 2 cut(s) 247, 665
MwoI GCNNNNNNNGC 2 cut(s) 188, 239
NarI GGCGCC 1 cut(s) 761
NdeII GATC 1 cut(s) 42
NlaIII CATG 4 cut(s) 276, 295, 355, 524
NlaIV GGNNCC 4 cut(s) 278, 464, 696, 762
NmuCI GTSAC 2 cut(s) 135, 554
PagI TCATGA 1 cut(s) 520
PfeI GAWTC 1 cut(s) 169
PinAI ACCGGT 1 cut(s) 401
PleI GAGTC 1 cut(s) 634
PluTI GGCGCC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 245, 663
PspEI GGTNACC 2 cut(s) 346, 554
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 2 cut(s) 245, 663
PspN4I GGNNCC 4 cut(s) 278, 464, 696, 762
PspPI GGNCC 2 cut(s) 151, 463
PspPPI RGGWCCY 1 cut(s) 463
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 2 cut(s) 151, 463
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 2 cut(s) 247, 665
SetI ASST 8 cut(s) 75, 92, 235, 428, 481, 556, 592, 675
SfaNI GCATC 1 cut(s) 178
SfoI GGCGCC 1 cut(s) 762
SinI GGWCC 1 cut(s) 463
Sse9I AATT 6 cut(s) 54, 213, 341, 372, 580, 606
SsiI CCGC 1 cut(s) 265
SspDI GGCGCC 1 cut(s) 760
StyD4I CCNGG 2 cut(s) 245, 663
TaaI ACNGT 2 cut(s) 146, 309
TaqI TCGA 2 cut(s) 156, 456
TasI AATT 6 cut(s) 54, 213, 341, 372, 580, 606
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 2 cut(s) 124, 771
TseFI GTSAC 2 cut(s) 135, 554
Tsp45I GTSAC 2 cut(s) 135, 554
TspDTI ATGAA 6 cut(s) 66, 473, 509, 537, 555, 764
TspRI CASTG 2 cut(s) 124, 771
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 2 cut(s) 54, 606
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 671
XmiI GTMKAC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.