Rroxscaffold_1G00044650

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000111
Physical Location & Seq
Reverse (-)
63656019 .. 63657222
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044650.1

Sequence Viewer

Length: 321 bp
ATGGAAAAGGTTCAAGACTGGCCTTATATCTATTTAAATATAGATCCAGGGACGCCTCTCGAAGTCCGAACGGAGCCATCCACCGGTCACCCCGTCATCGTTGCTCTTGATTTAGCAGAGGAGAAGTTCTCGGAATTGCCTCCACTGAATCTATCGAGAGATTTTCAGGAATATAAAACTGGCGTTTTGAGAGGGTGGGTGGAGATTATCCTTTTTTCTTTCAATGAGTTTCAGGTTGACTACTGTATTTTGAACACCACAATTGGGTGCATTGGCGAGCAGCACAACCAGTTCTTTTGGAATGAGGATAATCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

106

Amino Acids

12.37

Weight (kDa)

4.37

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 83, 264
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 3 cut(s) 14, 223, 253
AjnI CCWGG 1 cut(s) 46
AlwI GGATC 1 cut(s) 38
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 280
AsiGI ACCGGT 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 80
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 48
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 264
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 23, 184, 289
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 83, 264
BseNI ACTGG 3 cut(s) 23, 184, 289
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 1 cut(s) 22
BshTI ACCGGT 1 cut(s) 83
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 83, 264
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 43
BspANI GGCC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 3 cut(s) 23, 184, 289
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 48
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 83
CseI GACGC 1 cut(s) 61
CspAI ACCGGT 1 cut(s) 83
CviJI RGCY 2 cut(s) 22, 76
CviKI_1 RGCY 2 cut(s) 22, 76
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
DraI TTTAAA 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 46
FaiI YATR 3 cut(s) 27, 41, 174
FaqI GGGAC 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 84
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 68, 133
Hpy188III TCNNGA 5 cut(s) 14, 59, 107, 156, 167
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 4, 33, 60, 97, 152, 165, 218, 302
Lsp1109I GCAGC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 305
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 43
MluCI AATT 2 cut(s) 134, 261
MnlI CCTC 5 cut(s) 66, 112, 150, 185, 298
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 1 cut(s) 35
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 48
NdeII GATC 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 46
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 43
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 48
SetI ASST 2 cut(s) 12, 237
SmiI ATTTAAAT 1 cut(s) 36
Sse9I AATT 2 cut(s) 134, 261
StyD4I CCNGG 1 cut(s) 46
SwaI ATTTAAAT 1 cut(s) 36
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 60, 155
TasI AATT 2 cut(s) 134, 261
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.