RchiOBHm_Chr7g0240141

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000111
Physical Location & Seq
Reverse (-)
66031791 .. 66032231
441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21525

Sequence Viewer

Length: 441 bp
ATGGAAGACAATGGCGAGCTGACAGGGCACCAAATCCCCCTTCCAGCCGAGATCATAATTGAGATTCTTTCATGGCTAACAGTGAAGTCCTTATGCCGCTTCAGGTGCGTATCAAAGCCCTGGCGTTCTCTAATCTCCAACAAAAAGTTCATTGCAATGCACACTAGGAAAGCCCTCGAGGATAAAGAGGTATTCTTAGGGAGACGAAGAGTCATATTTAACGGGCCATCACATTGCCTTTACTCTTTACACCTAGATGAGTTTCCCAACCATGCAGATAATCATGATGGTTTAGTAACAGCCACCGTGCTTGATTTTGTTTCCGATGAATATTCTGCAGGACGTCATGCTTGGGTTCCCTTCATCTACTCCTGCAATAACTTCTTGTTGTGCGACACGATGTGTGGGTTTTATTTGGTTAACCCTGCTACCAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

146

Amino Acids

16.77

Weight (kDa)

6.37

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 50 3.7e-11 F-box domain
F-box-like PF12937 14 - 47 2.9e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 346
AbsI CCTCGAGG 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 27
AciI CCGC 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 343
AdeI CACNNNGTG 1 cut(s) 402
AhdI GACNNNNNGTC 1 cut(s) 209
AjnI CCWGG 2 cut(s) 119, 431
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 131, 163
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 2 cut(s) 235, 281
BciT130I CCWGG 2 cut(s) 121, 433
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 165, 254
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 121, 433
BmeRI GACNNNNNGTC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 29, 357
BmrFI CCNGG 2 cut(s) 121, 433
BpiI GAAGAC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 119, 432
Bse3DI GCAATG 3 cut(s) 150, 162, 232
BseBI CCWGG 2 cut(s) 121, 433
BseDI CCNNGG 2 cut(s) 119, 432
BseMI GCAATG 3 cut(s) 150, 162, 232
BseSI GKGCMC 1 cut(s) 30
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsnI GGCC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 226
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 29, 357
BspMAI CTGCAG 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 27
BsrDI GCAATG 3 cut(s) 150, 162, 232
BssECI CCNNGG 2 cut(s) 119, 432
BssMI GATC 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 121, 433
Bst4CI ACNGT 2 cut(s) 82, 307
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 196
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 25, 105
BstNI CCWGG 2 cut(s) 121, 433
BstSCI CCNGG 2 cut(s) 119, 431
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 224
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 4 cut(s) 72, 272, 284, 347
CviJI RGCY 7 cut(s) 19, 47, 76, 118, 173, 226, 302
CviKI_1 RGCY 7 cut(s) 19, 47, 76, 118, 173, 226, 302
DdeI CTNAG 1 cut(s) 196
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DraIII CACNNNGTG 1 cut(s) 402
DriI GACNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 202
Eam1105I GACNNNNNGTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 119, 431
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 4 cut(s) 75, 275, 287, 350
FaiI YATR 7 cut(s) 56, 73, 94, 215, 273, 285, 348
FatI CATG 4 cut(s) 71, 271, 283, 346
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 165, 254
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 343
Hin1II CATG 4 cut(s) 75, 275, 287, 350
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 2 cut(s) 64, 210
HpaI GTTAAC 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 50, 370
HpyCH4III ACNGT 2 cut(s) 82, 307
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 5 cut(s) 155, 160, 275, 338, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 105
HpyF3I CTNAG 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 343
Hsp92II CATG 4 cut(s) 75, 275, 287, 350
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 8 cut(s) 9, 57, 88, 106, 133, 324, 385, 418
MaeI CTAG 2 cut(s) 165, 254
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 17, 219
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 3 cut(s) 172, 181, 185
MseI TTAA 2 cut(s) 219, 420
MslI CAYNNNNRTG 2 cut(s) 155, 255
MspR9I CCNGG 2 cut(s) 121, 433
MvaI CCWGG 2 cut(s) 121, 433
MwoI GCNNNNNNNGC 2 cut(s) 25, 105
NdeII GATC 1 cut(s) 51
NlaIII CATG 4 cut(s) 75, 275, 287, 350
NlaIV GGNNCC 2 cut(s) 29, 357
NmeAIII GCCGAG 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 176
PagI TCATGA 1 cut(s) 283
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 119, 431
PspGI CCWGG 2 cut(s) 119, 431
PspN4I GGNNCC 2 cut(s) 29, 357
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 176
PstI CTGCAG 1 cut(s) 340
RseI CAYNNNNRTG 2 cut(s) 155, 255
SaqAI TTAA 2 cut(s) 219, 420
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 2 cut(s) 121, 433
SduI GDGCHC 1 cut(s) 30
SetI ASST 5 cut(s) 21, 107, 192, 255, 346
SfcI CTRYAG 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 155, 255
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 97
SspI AATATT 1 cut(s) 332
SspMI CTAG 2 cut(s) 165, 254
StyD4I CCNGG 2 cut(s) 119, 431
TaaI ACNGT 2 cut(s) 82, 307
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 57
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 219, 420
Tru9I TTAA 2 cut(s) 219, 420
TscAI CASTG 1 cut(s) 87
TspDTI ATGAA 4 cut(s) 60, 139, 342, 352
TspRI CASTG 1 cut(s) 87
XhoI CTCGAG 1 cut(s) 176
XspI CTAG 2 cut(s) 165, 254
ZraI GACGTC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.