RLG00000021915

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000111
Physical Location & Seq
Forward (+)
79276342 .. 79277479
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021915

Sequence Viewer

Length: 840 bp
ATGCCGTACTTCAGGTGCGTATCAAAGCCTTGGCGTTCTCTAATCTCCAACACCAAGTTCATTGCACTGCACGCCAAGAAAGCCCTCGAGGATAAAGAAGTATTCTTTCGGAGACGAAGAGTCATATTTAACGTGGCACTACATTACCTTTACTCTTTGGACCTAGACCAGTTCCTCAACCATAACTATAACGATGATGATGACAATGCACTGGTTCTTAAGAATCCCCATGTTCATGCAGATAATACTTATGATGGTTTGATACCAGCCACCGAGCTCGATTTTGTTTCGGCAGAAGGAAGTAGACCCATATACTTCATCTACTCCTGCAATAACTTGTTGTTGTGCGATATGAGCGACTGTTGGAGTGTTGGAGATCGACACTCTTCGGTGATTGTATCTTTTGTATTAGCAGAGGAGAAGGTTCGCGAAATTCGACTCCCACCCATCGGTGATACTTGTATAGCAGAGCTGGGAGTGTTTAGAGACTGCCTACGTATAAGGCTCGCCGGTATTCATCAAACATTCAATGAGTTTTGGGTCATGAAAGAATATGGGGTGAGCGAGTCTTGGACTAGAATGAGGGTCTCCATGCCATACAACCAAATGACACATTTTGGTTTCTCTACAAAATCTCATGATTTGATGGTGTGTGGAAGTTCATTTGTTATGTACGACTTCAGAGAAGAAAGTTTTAGAAACCTTCCAATTCGTGATACCACCTTAAGAGGGAATGGCGTTGGGGTTTATGTTGAGGGACTTTTTCCACTAATCGATCGAGAGCAGGACGAGAGCCGTGGAGTAGATAATCAAGTATTAATTAAGCTCAAGCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

280

Amino Acids

32.37

Weight (kDa)

6.06

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 86
AccI GTMKAC 1 cut(s) 304
AccII CGCG 1 cut(s) 429
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 664
AfaI GTAC 2 cut(s) 8, 674
AfiI CCNNNNNNNGG 2 cut(s) 449, 729
AflII CTTAAG 2 cut(s) 218, 724
AgsI TTSAA 1 cut(s) 529
AhdI GACNNNNNGTC 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 3 cut(s) 277, 472, 826
AluI AGCT 3 cut(s) 277, 472, 826
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 3 cut(s) 106, 480, 592
Ama87I CYCGRG 1 cut(s) 86
ApoI RAATTY 1 cut(s) 432
AseI ATTAAT 1 cut(s) 818
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 3 cut(s) 403, 464, 571
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BccI CCATC 3 cut(s) 248, 455, 640
BceAI ACGGC 1 cut(s) 780
BcoDI GTCTC 3 cut(s) 106, 480, 592
BfaI CTAG 2 cut(s) 164, 576
BfrI CTTAAG 2 cut(s) 218, 724
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 812
Bsa29I ATCGAT 1 cut(s) 774
BsaAI YACGTR 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 2 cut(s) 29, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 729
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 2 cut(s) 169, 216
Bse3DI GCAATG 1 cut(s) 60
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 2 cut(s) 29, 796
BseLI CCNNNNNNNGG 2 cut(s) 449, 729
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 169, 216
BseRI GAGGAG 1 cut(s) 431
BseYI CCCAGC 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 774
BsiEI CGRYCG 1 cut(s) 778
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 2 cut(s) 449, 729
BsmAI GTCTC 3 cut(s) 106, 480, 592
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 771
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 376, 775
Bsp68I TCGCGA 1 cut(s) 429
BspDI ATCGAT 1 cut(s) 774
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 2 cut(s) 543, 637
BspTI CTTAAG 2 cut(s) 218, 724
BspTNI GGTCTC 1 cut(s) 592
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 2 cut(s) 169, 216
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 29, 796
BssMI GATC 2 cut(s) 376, 775
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 112, 391
BstAFI CTTAAG 2 cut(s) 218, 724
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 72, 507, 834
BstDSI CCRYGG 1 cut(s) 796
BstFNI CGCG 1 cut(s) 429
BstKTI GATC 2 cut(s) 379, 778
BstMAI GTCTC 3 cut(s) 106, 480, 592
BstMBI GATC 2 cut(s) 376, 775
BstMCI CGRYCG 1 cut(s) 778
BstMWI GCNNNNNNNGC 3 cut(s) 71, 80, 354
BstNSI RCATGY 1 cut(s) 836
BstSNI TACGTA 1 cut(s) 497
BstUI CGCG 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 774
BsuTUI ATCGAT 1 cut(s) 774
BtgI CCRYGG 1 cut(s) 796
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 65, 209
BtuMI TCGCGA 1 cut(s) 429
Cac8I GCNNGC 3 cut(s) 72, 507, 834
CciI TCATGA 2 cut(s) 543, 637
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 160
ClaI ATCGAT 1 cut(s) 774
Csp6I GTAC 2 cut(s) 7, 673
CviAII CATG 6 cut(s) 230, 236, 544, 592, 638, 833
CviJI RGCY 8 cut(s) 28, 83, 269, 277, 472, 505, 795, 826
CviKI_1 RGCY 8 cut(s) 28, 83, 269, 277, 472, 505, 795, 826
CviQI GTAC 2 cut(s) 7, 673
DpnI GATC 2 cut(s) 378, 777
DpnII GATC 2 cut(s) 376, 775
DriI GACNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 112, 391
Eam1105I GACNNNNNGTC 1 cut(s) 119
EarI CTCTTC 2 cut(s) 112, 391
Ecl136II GAGCTC 1 cut(s) 277
Eco105I TACGTA 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 664
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 6 cut(s) 233, 239, 547, 595, 641, 836
FaqI GGGAC 1 cut(s) 771
FatI CATG 6 cut(s) 229, 235, 543, 591, 637, 832
FblI GTMKAC 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 279
FspBI CTAG 2 cut(s) 164, 576
GsaI CCCAGC 1 cut(s) 476
HapII CCGG 1 cut(s) 510
Hin1II CATG 6 cut(s) 233, 239, 547, 595, 641, 836
HinfI GANTC 4 cut(s) 120, 223, 438, 566
HpaII CCGG 1 cut(s) 510
HphI GGTGA 3 cut(s) 403, 464, 571
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 111, 683
Hpy188III TCNNGA 5 cut(s) 428, 544, 638, 713, 779
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 290, 415, 713
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 2 cut(s) 132, 496
HpyCH4V TGCA 6 cut(s) 65, 70, 209, 239, 330, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 80, 354
HpySE526I ACGT 2 cut(s) 132, 496
Hsp92II CATG 6 cut(s) 233, 239, 547, 595, 641, 836
Kzo9I GATC 2 cut(s) 376, 775
LpnPI CCDG 7 cut(s) 182, 197, 279, 340, 458, 523, 770
MaeI CTAG 2 cut(s) 164, 576
MaeII ACGT 2 cut(s) 132, 496
MalI GATC 2 cut(s) 378, 777
MboI GATC 2 cut(s) 376, 775
MboII GAAGA 3 cut(s) 129, 378, 698
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 3 cut(s) 432, 708, 819
MlyI GAGTC 3 cut(s) 129, 432, 575
MmeI TCCRAC 3 cut(s) 72, 344, 352
MnlI CCTC 7 cut(s) 82, 95, 185, 409, 576, 722, 748
Mph1103I ATGCAT 1 cut(s) 838
MseI TTAA 5 cut(s) 129, 219, 725, 818, 822
MslI CAYNNNNRTG 1 cut(s) 234
MspCI CTTAAG 2 cut(s) 218, 724
MspI CCGG 1 cut(s) 510
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 71, 80, 354
NdeII GATC 2 cut(s) 376, 775
NlaIII CATG 6 cut(s) 233, 239, 547, 595, 641, 836
NruI TCGCGA 1 cut(s) 429
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 1 cut(s) 836
PacI TTAATTAA 1 cut(s) 822
PaeI GCATGC 1 cut(s) 836
PaeR7I CTCGAG 1 cut(s) 86
PagI TCATGA 2 cut(s) 543, 637
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PfeI GAWTC 1 cut(s) 223
Ple19I CGATCG 1 cut(s) 778
PleI GAGTC 3 cut(s) 128, 432, 574
PpsI GAGTC 3 cut(s) 128, 432, 574
Ppu21I YACGTR 1 cut(s) 497
PshBI ATTAAT 1 cut(s) 818
Psp124BI GAGCTC 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 160
PspXI VCTCGAGB 1 cut(s) 86
PvuI CGATCG 1 cut(s) 778
RruI TCGCGA 1 cut(s) 429
RsaI GTAC 2 cut(s) 8, 674
RsaNI GTAC 2 cut(s) 7, 673
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 5 cut(s) 129, 219, 725, 818, 822
Sau3AI GATC 2 cut(s) 376, 775
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 3 cut(s) 129, 432, 575
SduI GDGCHC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 86
SinI GGWCC 1 cut(s) 160
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 4 cut(s) 86, 218, 724, 827
SmoI CTYRAG 4 cut(s) 86, 218, 724, 827
SnaBI TACGTA 1 cut(s) 497
SphI GCATGC 1 cut(s) 836
Sse9I AATT 3 cut(s) 432, 708, 819
SspMI CTAG 2 cut(s) 164, 576
SstI GAGCTC 1 cut(s) 279
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 2 cut(s) 135, 499
TaqI TCGA 6 cut(s) 87, 279, 379, 436, 774, 778
TasI AATT 3 cut(s) 432, 708, 819
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 5 cut(s) 129, 219, 725, 818, 822
Tru9I TTAA 5 cut(s) 129, 219, 725, 818, 822
TscAI CASTG 2 cut(s) 72, 216
TspDTI ATGAA 6 cut(s) 49, 224, 307, 506, 560, 651
TspRI CASTG 2 cut(s) 72, 216
Vha464I CTTAAG 2 cut(s) 218, 724
VpaK11BI GGWCC 1 cut(s) 160
VspI ATTAAT 1 cut(s) 818
XapI RAATTY 1 cut(s) 432
XceI RCATGY 1 cut(s) 836
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 2 cut(s) 164, 576
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.