Prupe.4G236400_v2.0.a1

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000111
Physical Location & Seq
Reverse (-)
15308132 .. 15309660
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G236400.1

Sequence Viewer

Length: 1101 bp
ATGGGTAACCCTAACTTTCCATCCGACATCATACCTGAGATTCTTTCAAGGCTACCAGTGAAGTCACTATGCCGCTTCAGGTGTGTATCAAAGTCATGGCTTTCCTTAATCGCCGACCCTGATTTTGTCAAGAGGCAACTTAACAAAGCTATTGAGAGCAAGGATATTTTCAACCAAAGACGAAGGCTTATATTTACTGATGAGTCACACAGGTCACTTTTCTCTTTGGACCTCGATGAATTTCTCAATCATAATGATGCAATTGATAATTATCTTGATAAAGAATATGATAACCTTATCATTAACATTGACGATAACGATGATGTCGTAGCCACTGAGCTCGACTATGTTTTTAGTGAACTGCCAAATAATTGGGCTTTCTTGGTGTTTCACTCCAATGGCTTGTTGTTGTACCAGTTATATTACCGGATTTATATCTGGTTAACCCTGCAACAAGAGAAGCGTATTATTTCGACCTCTTTGGTTTTGGATTTGATCACTCCTCTGGTGATTACAAGGTCATTGGAAGGTGGAATTATGTTCAGTGTCTACACATTGAAAACTGGCTCTTGGCGAAAGATTCAAACGCGATATCCCTACAATATCCCTACAAATGTGACCTCATGCGGAGGCCTTCATTGGTTGTTGGATAGAGTTGTAGTTGAACATCGATCGTTGATTATATCTTTCGATTTAGCAGAGGAGAATGTCCAAGAAATTCCACTACCTCTTGCTTCTATTGATGCTAAAGATTATCTTGTTGGCCGTGGCGGATCTAGCAAGGAGGTGACCTCCTATTGCCAAAGACATTTACTTAAGTTTATAATAGATTGCTTATGTGTAACAATGCACAATGAGTTTTGGATCATGAAAGAATATGGCGTGAGGGTGTCTTGGACTAAAGTAAGGATCTCCATCCCATATTATATATTACGACACTCTGGTTTCTGGAAGAAAAGTCATGATCTCTTGGATTTCAGGGACCGATTGGTTTTGTGCAATTGTAATGATGAAAGATTTCGGAATCTTTCAATCTCCGGATTACCCAAAGTTAATGAAGTTGGGATTTACTTGGAGAGCCTTGTTTCGCCTAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

367

Amino Acids

42.69

Weight (kDa)

6.16

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
AccI GTMKAC 1 cut(s) 549
AccII CGCG 1 cut(s) 589
AccIII TCCGGA 1 cut(s) 1037
AciI CCGC 3 cut(s) 73, 627, 771
AclWI GGATC 3 cut(s) 781, 872, 917
AcoI YGGCCR 1 cut(s) 763
AcsI RAATTY 2 cut(s) 239, 717
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 413
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 6 cut(s) 48, 172, 559, 584, 665, 1032
AluBI AGCT 2 cut(s) 149, 340
AluI AGCT 2 cut(s) 149, 340
Alw21I GWGCWC 1 cut(s) 342
AlwI GGATC 3 cut(s) 781, 872, 917
Aor13HI TCCGGA 1 cut(s) 1037
AoxI GGCC 2 cut(s) 631, 763
ApoI RAATTY 2 cut(s) 239, 717
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
Asp700I GAANNNNTTC 1 cut(s) 1017
AspS9I GGNCC 2 cut(s) 229, 982
AsuHPI GGTGA 2 cut(s) 520, 799
AvaII GGWCC 2 cut(s) 229, 982
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BccI CCATC 2 cut(s) 28, 923
BceAI ACGGC 1 cut(s) 750
BclI TGATCA 1 cut(s) 495
BfaI CTAG 1 cut(s) 777
BfrI CTTAAG 1 cut(s) 815
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 229, 982
BmgT120I GGNCC 2 cut(s) 229, 982
BmiI GGNNCC 1 cut(s) 983
BmsI GCATC 2 cut(s) 247, 733
BplI GAGNNNNNCTC 2 cut(s) 776, 808
Bsa29I ATCGAT 1 cut(s) 670
BsaBI GATNNNNATC 3 cut(s) 270, 434, 914
BsaJI CCNNGG 1 cut(s) 766
BsaWI WCCGGW 2 cut(s) 426, 1037
Bse1I ACTGG 3 cut(s) 56, 415, 568
Bse8I GATNNNNATC 3 cut(s) 270, 434, 914
BseAI TCCGGA 1 cut(s) 1037
BseCI ATCGAT 1 cut(s) 670
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 2 cut(s) 20, 915
BseJI GATNNNNATC 3 cut(s) 270, 434, 914
BseMII CTCAG 2 cut(s) 27, 327
BseNI ACTGG 3 cut(s) 56, 415, 568
BseRI GAGGAG 2 cut(s) 492, 716
Bsh1236I CGCG 1 cut(s) 589
Bsh1285I CGRYCG 1 cut(s) 674
BshFI GGCC 2 cut(s) 633, 765
BshVI ATCGAT 1 cut(s) 670
BsiEI CGRYCG 1 cut(s) 674
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 427, 1038
BslFI GGGAC 1 cut(s) 995
BsmFI GGGAC 1 cut(s) 995
BsnI GGCC 2 cut(s) 633, 765
Bsp1286I GDGCHC 1 cut(s) 342
Bsp13I TCCGGA 1 cut(s) 1037
Bsp143I GATC 6 cut(s) 495, 671, 773, 864, 909, 964
BspACI CCGC 3 cut(s) 73, 627, 771
BspANI GGCC 2 cut(s) 633, 765
BspCNI CTCAG 2 cut(s) 28, 328
BspDI ATCGAT 1 cut(s) 670
BspEI TCCGGA 1 cut(s) 1037
BspFNI CGCG 1 cut(s) 589
BspHI TCATGA 2 cut(s) 867, 961
BspLI GGNNCC 1 cut(s) 983
BspPI GGATC 3 cut(s) 781, 872, 917
BspTI CTTAAG 1 cut(s) 815
BsrI ACTGG 3 cut(s) 56, 415, 568
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 6 cut(s) 495, 671, 773, 864, 909, 964
BstAFI CTTAAG 1 cut(s) 815
BstDEI CTNAG 2 cut(s) 36, 336
BstDSI CCRYGG 1 cut(s) 766
BstEII GGTNACC 2 cut(s) 5, 787
BstF5I GGATG 2 cut(s) 20, 915
BstFNI CGCG 1 cut(s) 589
BstKTI GATC 6 cut(s) 498, 674, 776, 867, 912, 967
BstMBI GATC 6 cut(s) 495, 671, 773, 864, 909, 964
BstMCI CGRYCG 1 cut(s) 674
BstMWI GCNNNNNNNGC 1 cut(s) 777
BstPI GGTNACC 2 cut(s) 5, 787
BstUI CGCG 1 cut(s) 589
BstX2I RGATCY 2 cut(s) 773, 909
BstXI CCANNNNNNTGG 1 cut(s) 372
BstYI RGATCY 2 cut(s) 773, 909
Bsu15I ATCGAT 1 cut(s) 670
BsuRI GGCC 2 cut(s) 633, 765
BsuTUI ATCGAT 1 cut(s) 670
BtgI CCRYGG 1 cut(s) 766
BtsCI GGATG 2 cut(s) 20, 915
BtsIMutI CAGTG 3 cut(s) 63, 333, 550
CciI TCATGA 2 cut(s) 867, 961
Cfr13I GGNCC 2 cut(s) 229, 982
ClaI ATCGAT 1 cut(s) 670
Csp6I GTAC 1 cut(s) 412
CviAII CATG 4 cut(s) 96, 624, 868, 962
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 36, 336
DpnI GATC 6 cut(s) 497, 673, 775, 866, 911, 966
DpnII GATC 6 cut(s) 495, 671, 773, 864, 909, 964
EaeI YGGCCR 1 cut(s) 763
EciI GGCGGA 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 340
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 593
Eco47I GGWCC 2 cut(s) 229, 982
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 61
Eco91I GGTNACC 2 cut(s) 5, 787
EcoICRI GAGCTC 1 cut(s) 340
EcoO65I GGTNACC 2 cut(s) 5, 787
EcoRV GATATC 1 cut(s) 593
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 4 cut(s) 99, 627, 871, 965
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 1 cut(s) 995
FatI CATG 4 cut(s) 95, 623, 867, 961
FbaI TGATCA 1 cut(s) 495
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 2 cut(s) 7, 902
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 777
GluI GCNGC 1 cut(s) 73
HaeIII GGCC 2 cut(s) 633, 765
HapII CCGG 2 cut(s) 427, 1038
Hin1II CATG 4 cut(s) 99, 627, 871, 965
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 4 cut(s) 40, 203, 580, 1024
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 2 cut(s) 427, 1038
HphI GGTGA 2 cut(s) 520, 799
Hpy166II GTNNAC 3 cut(s) 359, 444, 550
Hpy188I TCNGA 2 cut(s) 25, 1023
Hpy188III TCNNGA 6 cut(s) 130, 275, 868, 949, 962, 1038
Hpy8I GTNNAC 3 cut(s) 359, 444, 550
HpyAV CCTTC 3 cut(s) 177, 521, 644
HpyCH4V TGCA 4 cut(s) 260, 451, 850, 999
HpyF10VI GCNNNNNNNGC 1 cut(s) 777
HpyF3I CTNAG 2 cut(s) 36, 336
Hsp92II CATG 4 cut(s) 99, 627, 871, 965
Kpn2I TCCGGA 1 cut(s) 1037
Ksp22I TGATCA 1 cut(s) 495
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 6 cut(s) 495, 671, 773, 864, 909, 964
LweI GCATC 2 cut(s) 247, 733
MaeI CTAG 1 cut(s) 777
MaeIII GTNAC 7 cut(s) 5, 63, 204, 213, 616, 787, 841
MalI GATC 6 cut(s) 497, 673, 775, 866, 911, 966
MboI GATC 6 cut(s) 495, 671, 773, 864, 909, 964
MboII GAAGA 1 cut(s) 964
MfeI CAATTG 2 cut(s) 261, 1000
MflI RGATCY 2 cut(s) 773, 909
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 8 cut(s) 239, 261, 268, 370, 534, 717, 1000, 1096
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 48, 627
MroI TCCGGA 1 cut(s) 1037
MroXI GAANNNNTTC 1 cut(s) 1017
MseI TTAA 6 cut(s) 107, 141, 303, 443, 816, 1053
MslI CAYNNNNRTG 2 cut(s) 255, 396
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 2 cut(s) 427, 1038
MunI CAATTG 2 cut(s) 261, 1000
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 1 cut(s) 777
NdeII GATC 6 cut(s) 495, 671, 773, 864, 909, 964
NlaIII CATG 4 cut(s) 99, 627, 871, 965
NlaIV GGNNCC 1 cut(s) 983
NmuCI GTSAC 5 cut(s) 63, 204, 213, 616, 787
PagI TCATGA 2 cut(s) 867, 961
PceI AGGCCT 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 3 cut(s) 40, 580, 1024
PkrI GCNGC 1 cut(s) 74
Ple19I CGATCG 1 cut(s) 674
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 824
Psp124BI GAGCTC 1 cut(s) 342
PspEI GGTNACC 2 cut(s) 5, 787
PspN4I GGNNCC 1 cut(s) 983
PspPI GGNCC 2 cut(s) 229, 982
PsuI RGATCY 2 cut(s) 773, 909
PvuI CGATCG 1 cut(s) 674
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 2 cut(s) 255, 396
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 6 cut(s) 107, 141, 303, 443, 816, 1053
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 6 cut(s) 495, 671, 773, 864, 909, 964
Sau96I GGNCC 2 cut(s) 229, 982
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 2 cut(s) 247, 733
SinI GGWCC 2 cut(s) 229, 982
SmiMI CAYNNNNRTG 2 cut(s) 255, 396
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 8 cut(s) 239, 261, 268, 370, 534, 717, 1000, 1096
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 3 cut(s) 73, 627, 771
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 1 cut(s) 342
StuI AGGCCT 1 cut(s) 633
TaqI TCGA 5 cut(s) 234, 342, 473, 670, 690
TaqII GACCGA 1 cut(s) 999
TasI AATT 8 cut(s) 239, 261, 268, 370, 534, 717, 1000, 1096
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 3 cut(s) 40, 580, 1024
Tru1I TTAA 6 cut(s) 107, 141, 303, 443, 816, 1053
Tru9I TTAA 6 cut(s) 107, 141, 303, 443, 816, 1053
TscAI CASTG 3 cut(s) 63, 340, 550
TseFI GTSAC 5 cut(s) 63, 204, 213, 616, 787
Tsp45I GTSAC 5 cut(s) 63, 204, 213, 616, 787
TspDTI ATGAA 5 cut(s) 252, 626, 884, 1026, 1071
TspRI CASTG 3 cut(s) 63, 340, 550
Vha464I CTTAAG 1 cut(s) 815
VpaK11BI GGWCC 2 cut(s) 229, 982
XapI RAATTY 2 cut(s) 239, 717
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.