RchiOBHm_Chr4g0386131

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000111
Physical Location & Seq
Reverse (-)
1731961 .. 1732692
732 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35952

Sequence Viewer

Length: 732 bp
ATGAAGAAAGTACCAAAGACACCATCATGGAGACCTGTGAGGCCCTTTTGCTTGAGCTTATGTGGATTTGGATTTGATTCCTCCACCAATGAGTACAAGGTGGTTAACGGGCAGGTCTATTCTGATATCAATGTAATCGTATTTAGTGTCTATACACTGAAAACTGATTCTTGGCGAAAGATCGAGTGCTTCTCTCCCTACCATGCTTATTGGTTTCAGGGGATTTTTCTGAATGGAGCTATTCATTGGTCGGCAACGACAGTTGGAGATCGATCCTCTTCGGTGATTGTATCTTTTCTATTAGCAGAGGAGGAGGTTCGCGAAATTCGACTCCCACCCATCGGTGATACTTGTTTAGCAAACCTGGGAGTGTTTAGAGATTGCCTATGTATAACGCTCGCTGGTATTGATCAAACATTCAATGAGTTTTGGGTCATGAAAGAATATGGGGTGAGCGAGTCTTGGACTAGAATGAGGGTCTCCATGCCATATCACCAATTGTCACATTTTGGTTTCTCTACAAAATCTCATGATTTGATGGTGTGTGGAAGTTCATTTGTTATGTACGACTTCAAAGAAGAAAGTTTTAGGAACCTTCCAATTCGTGATACCACCTTAGGAGGTAATGGTGTTGGGGTTTATGTTGAGGGACTTTTTCCACTAATCGATCGAGAGCAGGACGAGAGCCGTAGAGTAGATAATCAAGTATTGATTAAGCTCAAGCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

243

Amino Acids

27.79

Weight (kDa)

6.31

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 19 - 175 5.4e-15 F-box associated beta propeller domain
FBA_3 PF08268 22 - 175 2.9e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AccII CGCG 1 cut(s) 321
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 3 cut(s) 12, 95, 566
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 2 cut(s) 421, 574
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 3 cut(s) 57, 239, 718
AluI AGCT 3 cut(s) 57, 239, 718
Alw26I GTCTC 2 cut(s) 25, 484
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 4 cut(s) 295, 356, 463, 485
AxyI CCTNAGG 1 cut(s) 616
BccI CCATC 3 cut(s) 31, 347, 532
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 25, 484
BfaI CTAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 593
BmrFI CCNGG 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpuEI CTTGAG 2 cut(s) 73, 704
Bsa29I ATCGAT 2 cut(s) 271, 666
BsaI GGTCTC 2 cut(s) 25, 484
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 365
BseCI ATCGAT 2 cut(s) 271, 666
BseDI CCNNGG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 323, 326
Bsh1236I CGCG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 670
BshFI GGCC 1 cut(s) 43
BshVI ATCGAT 2 cut(s) 271, 666
BsiEI CGRYCG 1 cut(s) 670
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 25, 484
BsmFI GGGAC 1 cut(s) 663
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 2 cut(s) 25, 484
Bsp143I GATC 5 cut(s) 180, 268, 272, 409, 667
Bsp68I TCGCGA 1 cut(s) 321
BspANI GGCC 1 cut(s) 43
BspDI ATCGAT 2 cut(s) 271, 666
BspFNI CGCG 1 cut(s) 321
BspHI TCATGA 2 cut(s) 435, 529
BspLI GGNNCC 1 cut(s) 593
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 1 cut(s) 267
BspTNI GGTCTC 2 cut(s) 25, 484
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 5 cut(s) 180, 268, 272, 409, 667
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 399, 726
BstDEI CTNAG 1 cut(s) 616
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 5 cut(s) 183, 271, 275, 412, 670
BstMAI GTCTC 2 cut(s) 25, 484
BstMBI GATC 5 cut(s) 180, 268, 272, 409, 667
BstMCI CGRYCG 1 cut(s) 670
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 1 cut(s) 321
Bsu15I ATCGAT 2 cut(s) 271, 666
Bsu36I CCTNAGG 1 cut(s) 616
BsuRI GGCC 1 cut(s) 43
BsuTUI ATCGAT 2 cut(s) 271, 666
BtsIMutI CAGTG 1 cut(s) 155
BtuMI TCGCGA 1 cut(s) 321
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 399, 726
CciI TCATGA 2 cut(s) 435, 529
Cfr13I GGNCC 1 cut(s) 42
ClaI ATCGAT 2 cut(s) 271, 666
Csp6I GTAC 3 cut(s) 11, 94, 565
CviAII CATG 6 cut(s) 27, 203, 436, 484, 530, 725
CviJI RGCY 5 cut(s) 43, 57, 239, 687, 718
CviKI_1 RGCY 5 cut(s) 43, 57, 239, 687, 718
CviQI GTAC 3 cut(s) 11, 94, 565
DdeI CTNAG 1 cut(s) 616
DpnI GATC 5 cut(s) 182, 270, 274, 411, 669
DpnII GATC 5 cut(s) 180, 268, 272, 409, 667
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco31I GGTCTC 2 cut(s) 25, 484
Eco32I GATATC 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 363
EcoRV GATATC 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 730
FaeI CATG 6 cut(s) 30, 206, 439, 487, 533, 728
FaqI GGGAC 1 cut(s) 663
FatI CATG 6 cut(s) 26, 202, 435, 483, 529, 724
FbaI TGATCA 1 cut(s) 409
FspBI CTAG 1 cut(s) 468
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 6 cut(s) 30, 206, 439, 487, 533, 728
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 4 cut(s) 77, 167, 330, 458
HpaI GTTAAC 1 cut(s) 106
HphI GGTGA 4 cut(s) 295, 356, 463, 485
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 124, 231
Hpy188III TCNNGA 5 cut(s) 320, 436, 530, 605, 671
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 728
HpyF3I CTNAG 1 cut(s) 616
Hsp92II CATG 6 cut(s) 30, 206, 439, 487, 533, 728
Ksp22I TGATCA 1 cut(s) 409
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 5 cut(s) 180, 268, 272, 409, 667
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 7 cut(s) 48, 98, 203, 350, 377, 387, 662
MaeI CTAG 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 501
MalI GATC 5 cut(s) 182, 270, 274, 411, 669
MboI GATC 5 cut(s) 180, 268, 272, 409, 667
MboII GAAGA 3 cut(s) 16, 270, 590
MfeI CAATTG 1 cut(s) 497
MluCI AATT 3 cut(s) 324, 497, 600
MlyI GAGTC 2 cut(s) 324, 467
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 9 cut(s) 33, 91, 286, 301, 304, 307, 468, 614, 640
Mph1103I ATGCAT 1 cut(s) 730
MseI TTAA 2 cut(s) 105, 714
MslI CAYNNNNRTG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 321
NdeII GATC 5 cut(s) 180, 268, 272, 409, 667
NlaIII CATG 6 cut(s) 30, 206, 439, 487, 533, 728
NlaIV GGNNCC 1 cut(s) 593
NmuCI GTSAC 1 cut(s) 501
NruI TCGCGA 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 730
NspI RCATGY 1 cut(s) 728
PaeI GCATGC 1 cut(s) 728
PagI TCATGA 2 cut(s) 435, 529
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PfeI GAWTC 2 cut(s) 77, 167
Ple19I CGATCG 1 cut(s) 670
PleI GAGTC 2 cut(s) 324, 466
PpsI GAGTC 2 cut(s) 324, 466
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 593
PspPI GGNCC 1 cut(s) 42
PvuI CGATCG 1 cut(s) 670
RruI TCGCGA 1 cut(s) 321
RsaI GTAC 3 cut(s) 12, 95, 566
RsaNI GTAC 3 cut(s) 11, 94, 565
RseI CAYNNNNRTG 1 cut(s) 25
SaqAI TTAA 2 cut(s) 105, 714
Sau3AI GATC 5 cut(s) 180, 268, 272, 409, 667
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 2 cut(s) 324, 467
ScrFI CCNGG 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 25
SmlI CTYRAG 2 cut(s) 52, 719
SmoI CTYRAG 2 cut(s) 52, 719
SphI GCATGC 1 cut(s) 728
Sse9I AATT 3 cut(s) 324, 497, 600
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 5 cut(s) 183, 271, 328, 666, 670
TasI AATT 3 cut(s) 324, 497, 600
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 2 cut(s) 77, 167
Tru1I TTAA 2 cut(s) 105, 714
Tru9I TTAA 2 cut(s) 105, 714
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 501
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 4 cut(s) 17, 233, 452, 543
TspRI CASTG 1 cut(s) 162
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 728
XspI CTAG 1 cut(s) 468
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.