Rh2DG056900

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000111
Physical Location & Seq
Forward (+)
4197238 .. 4198491
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG056900.1

Sequence Viewer

Length: 624 bp
ATGGAAGACCAGGGCCAGTTTAAAGCCATTGAGGATAAGGGACAGCGTCTTGTATTTACTGACCATGCACGTAAACGCCTTTACGCTTTGGACCTTGTTCAGTTCCTCAACCATAATTTTGCACTTGTGAGGAATAATAATGTTGATGATTTGGATTTTGTAGCAAAACCCACTGAGCTCGACTTTGTTCGTCGCAATATTGGAAGTGGTTGGGTTCCCGTTGTCCTTTCCTGCAATAGCTTCTTGATGTGCAGGTCAGATTCTGGGTTCCATTTGATAAACCCTGTTACCAAGGAATGGAAGAAAGTACCAAAGACATCAATAACAAAGATGTCTTTTTCTTGGGAGCTATATGGGTTTGGATTTGACGACTCCACTAATCAATACAAGGTGGTTGAAGGGAAGGGCTGCACCGATGGATTTGTGTTTAGTGTCTATGCTTCTTTGACTGATTCTTGGAGAAAGATCGAGTGCCTATTTCCCTACAAACAGACTCGTGTCTGTAGGAAGGATGGGATGGTGCTGAATGGGGGTGTTCATTGGTTGGTCAAGCGAGATGAATCCTTGATTGTTAACAGAGCCTCTGATTACTATCAGTATCTACATGTCATTCACCGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

207

Amino Acids

24.08

Weight (kDa)

8.92

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 71 - 186 2.2e-13 F-box associated beta propeller domain
FBA_3 PF08268 77 - 187 2.2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 297
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 1 cut(s) 398
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 3 cut(s) 178, 240, 349
AluI AGCT 3 cut(s) 178, 240, 349
Alw21I GWGCWC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 13, 91
AsuHPI GGTGA 1 cut(s) 605
AvaII GGWCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 180
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 395
BccI CCATC 3 cut(s) 410, 506, 511
BciT130I CCWGG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 13, 91
BmiI GGNNCC 2 cut(s) 216, 269
BmrFI CCNGG 1 cut(s) 11
BoxI GACNNNNGTC 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 2 cut(s) 10, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 10, 291
BseGI GGATG 2 cut(s) 517, 522
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 2 cut(s) 271, 394
BshFI GGCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 180
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 465
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 216, 269
BspMI ACCTGC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 10, 291
BssMI GATC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 617
BstBAI YACGTR 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 517, 522
BstKTI GATC 1 cut(s) 468
BstMBI GATC 1 cut(s) 465
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 608
BstPAI GACNNNNGTC 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 502
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 517, 522
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 243
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 13, 91
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 65, 605
CviJI RGCY 7 cut(s) 15, 26, 178, 240, 349, 408, 581
CviKI_1 RGCY 7 cut(s) 15, 26, 178, 240, 349, 408, 581
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DraI TTTAAA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 2 cut(s) 68, 608
FaiI YATR 6 cut(s) 66, 114, 352, 354, 438, 606
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 64, 604
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 2 cut(s) 524, 529
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 409
GluI GCNGC 1 cut(s) 409
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 68, 608
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 260, 371, 452, 493, 560
HpaI GTTAAC 1 cut(s) 574
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 2 cut(s) 74, 574
Hpy188I TCNGA 2 cut(s) 259, 586
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 74, 574
Hpy99I CGWCG 2 cut(s) 195, 621
HpyAV CCTTC 3 cut(s) 392, 397, 502
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 5 cut(s) 68, 122, 234, 252, 411
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 2 cut(s) 68, 608
KspAI GTTAAC 1 cut(s) 574
Kzo9I GATC 1 cut(s) 465
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 23, 29, 238, 244, 249, 297
Lsp1109I GCAGC 1 cut(s) 395
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 2 cut(s) 17, 313
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 115
MlyI GAGTC 2 cut(s) 365, 487
MnlI CCTC 4 cut(s) 25, 116, 123, 592
MseI TTAA 2 cut(s) 21, 573
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeII GATC 1 cut(s) 465
NlaIII CATG 2 cut(s) 68, 608
NlaIV GGNNCC 2 cut(s) 216, 269
NspI RCATGY 1 cut(s) 608
PciI ACATGT 1 cut(s) 604
PfeI GAWTC 3 cut(s) 260, 452, 560
PflFI GACNNNGTC 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 1 cut(s) 410
PleI GAGTC 2 cut(s) 365, 487
PpsI GAGTC 2 cut(s) 365, 487
Ppu21I YACGTR 1 cut(s) 71
PscI ACATGT 1 cut(s) 604
PshAI GACNNNNGTC 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 216, 269
PspPI GGNCC 2 cut(s) 13, 91
PstNI CAGNNNCTG 1 cut(s) 263
PsyI GACNNNGTC 1 cut(s) 45
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 21, 573
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 1 cut(s) 465
Sau96I GGNCC 2 cut(s) 13, 91
SchI GAGTC 2 cut(s) 365, 487
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 73, 96, 180, 242, 257, 351, 393
SfcI CTRYAG 1 cut(s) 502
SinI GGWCC 1 cut(s) 91
Sse9I AATT 1 cut(s) 115
SspI AATATT 1 cut(s) 199
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 617
TaiI ACGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 180, 468
TasI AATT 1 cut(s) 115
TfiI GAWTC 3 cut(s) 260, 452, 560
Tru1I TTAA 2 cut(s) 21, 573
Tru9I TTAA 2 cut(s) 21, 573
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 408
TspDTI ATGAA 2 cut(s) 527, 573
TspRI CASTG 1 cut(s) 178
Tth111I GACNNNGTC 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 91
XceI RCATGY 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.