Rroxscaffold_1G00009130

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000111
Physical Location & Seq
Forward (+)
11550966 .. 11551805
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009130.1

Sequence Viewer

Length: 840 bp
ATGGCGGACCAAAAGAAACAGATGCGACTCCCAAACCTCCCCACGGAGGTCATACGCGAGATTCTTGTGTGGCTTCCCGTGAAATCCCTATGCCGATTCAGGTGTGTATCAAACACATGGCTCTCTCTAATCTCTGAATCCCACTTTGTGAATTCCCACTTCAACAAAGCCTTTGAGCATGAACATGTATTCCACCAAAGACGAAGAGTCCTCATTAGAGATGCTTGGCTATGCCGCCTTTTCAGTCTCAACCTTGATGAGTGTCTCAATCACATAAATATTGACGATGTTGGTGATGATATTTTAGTTGTACCCACTCAACTCAAGCGTCGTAGATTTACTAAGTTCGCGTTTTACTGCAATGGGTTGTTGTTGTTGAAGTCGTATTATGTGTTTTATTTGTTAAACCCTGCAACCAAGGAAACCAAGATAGTACCAAACCCACCAGAGGTATATATGTGGTCTAATGAGCTGTATGGGTTTGGATTTGATCTGTCCAGTCTAGATTACAAGGTGGTTCAGGGCGAGTTCTTTGAATTTGATCTTGGGTTTAGTGTTTATTCATTGAAAACCGGGTCTTGGCGAGCGATTGAGAAGCGATATCCCTATGAAAGTTTACAGTCTGGTATGCAGGGGAGACTGCTGAATGGGAGTATTCACTGGTTGGTTTGTAGAAACTACAATGATGTGCCATCCATGGTTCTCTTGTCTTTTGTTTTAGCAGACGAGGAAGTGCAAGAGATTCCACTACCGCCTGATTTCCTTGTTGATTTCAACATTGAAGATGAAACGTATTTTCTCGACGTGTTCCAGGAATGCCCTGTGTGTGGGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

279

Amino Acids

32.84

Weight (kDa)

5.57

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 49 3.3e-10 F-box domain
F-box-like PF12937 11 - 47 6.1e-07 F-box-like
FBA_3 PF08268 112 - 254 4.3e-11 F-box associated beta propeller domain
FBA_1 PF07734 117 - 270 1e-15 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 118 - 252 9.6e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 57, 350
AciI CCGC 3 cut(s) 5, 235, 752
AcsI RAATTY 2 cut(s) 151, 536
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 2 cut(s) 312, 435
AfiI CCNNNNNNNGG 5 cut(s) 43, 46, 448, 579, 827
AflIII ACRYGT 2 cut(s) 184, 804
AgsI TTSAA 6 cut(s) 163, 379, 536, 568, 775, 782
AhdI GACNNNNNGTC 1 cut(s) 206
AjiI CACGTC 1 cut(s) 805
AjnI CCWGG 1 cut(s) 810
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AloI GAACNNNNNNTCC 2 cut(s) 174, 206
AluBI AGCT 1 cut(s) 472
AluI AGCT 1 cut(s) 472
Alw26I GTCTC 3 cut(s) 251, 269, 631
ApoI RAATTY 2 cut(s) 151, 536
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 7
BccI CCATC 1 cut(s) 700
BciT130I CCWGG 1 cut(s) 812
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 3 cut(s) 251, 269, 631
BfaI CTAG 1 cut(s) 503
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 2 cut(s) 574, 812
Bme18I GGWCC 1 cut(s) 7
BmeRI GACNNNNNGTC 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 805
BmgT120I GGNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 574, 812
BmsI GCATC 2 cut(s) 12, 211
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 574
BsaJI CCNNGG 3 cut(s) 42, 417, 696
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 46, 448, 579, 827
Bse1I ACTGG 2 cut(s) 498, 665
Bse3DI GCAATG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 3 cut(s) 42, 417, 696
BseGI GGATG 1 cut(s) 692
BseLI CCNNNNNNNGG 5 cut(s) 43, 46, 448, 579, 827
BseMI GCAATG 1 cut(s) 367
BseNI ACTGG 2 cut(s) 498, 665
Bsh1236I CGCG 2 cut(s) 57, 350
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 5 cut(s) 43, 46, 448, 579, 827
BsmAI GTCTC 3 cut(s) 251, 269, 631
BsmI GAATGC 1 cut(s) 821
Bsp143I GATC 2 cut(s) 490, 541
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 3 cut(s) 5, 235, 752
BspFNI CGCG 2 cut(s) 57, 350
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 2 cut(s) 498, 665
BssECI CCNNGG 3 cut(s) 42, 417, 696
BssMI GATC 2 cut(s) 490, 541
BssT1I CCWWGG 2 cut(s) 417, 696
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 2 cut(s) 42, 696
BstF5I GGATG 1 cut(s) 692
BstFNI CGCG 2 cut(s) 57, 350
BstKTI GATC 2 cut(s) 493, 544
BstMAI GTCTC 3 cut(s) 251, 269, 631
BstMBI GATC 2 cut(s) 490, 541
BstNI CCWGG 1 cut(s) 812
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 572, 810
BstUI CGCG 2 cut(s) 57, 350
BtgI CCRYGG 2 cut(s) 42, 696
BtrI CACGTC 1 cut(s) 805
BtsCI GGATG 1 cut(s) 692
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 585
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 311, 434
CviAII CATG 4 cut(s) 117, 179, 185, 697
CviJI RGCY 5 cut(s) 73, 121, 170, 229, 472
CviKI_1 RGCY 5 cut(s) 73, 121, 170, 229, 472
CviQI GTAC 2 cut(s) 311, 434
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 492, 543
DpnII GATC 2 cut(s) 490, 541
DraIII CACNNNGTG 1 cut(s) 148
DriI GACNNNNNGTC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 199
Eam1105I GACNNNNNGTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 199
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 417, 696
Eco32I GATATC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 810
EcoRV GATATC 1 cut(s) 602
EcoT14I CCWWGG 2 cut(s) 417, 696
ErhI CCWWGG 2 cut(s) 417, 696
FaeI CATG 4 cut(s) 120, 182, 188, 700
FatI CATG 4 cut(s) 116, 178, 184, 696
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 1 cut(s) 679
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 503
GluI GCNGC 1 cut(s) 235
HapII CCGG 1 cut(s) 573
HgaI GACGC 1 cut(s) 317
Hin1II CATG 4 cut(s) 120, 182, 188, 700
HinfI GANTC 6 cut(s) 27, 61, 96, 137, 207, 742
HpaII CCGG 1 cut(s) 573
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 503, 800
Hpy8I GTNNAC 1 cut(s) 617
Hpy99I CGWCG 2 cut(s) 333, 806
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 2 cut(s) 791, 804
HpyCH4V TGCA 4 cut(s) 360, 413, 631, 736
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 791, 804
Hsp92II CATG 4 cut(s) 120, 182, 188, 700
Kzo9I GATC 2 cut(s) 490, 541
LweI GCATC 2 cut(s) 12, 211
MaeI CTAG 1 cut(s) 503
MaeII ACGT 2 cut(s) 791, 804
MalI GATC 2 cut(s) 492, 543
MboI GATC 2 cut(s) 490, 541
MboII GAAGA 2 cut(s) 216, 794
MluCI AATT 2 cut(s) 151, 536
MlyI GAGTC 2 cut(s) 21, 216
MnlI CCTC 5 cut(s) 40, 47, 221, 442, 721
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 2 cut(s) 574, 812
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 1 cut(s) 812
MvnI CGCG 2 cut(s) 57, 350
NciI CCSGG 1 cut(s) 574
NcoI CCATGG 1 cut(s) 696
NdeII GATC 2 cut(s) 490, 541
NlaIII CATG 4 cut(s) 120, 182, 188, 700
NspI RCATGY 1 cut(s) 188
PciI ACATGT 1 cut(s) 184
PctI GAATGC 1 cut(s) 821
PfeI GAWTC 4 cut(s) 61, 96, 137, 742
PfoI TCCNGGA 1 cut(s) 810
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 2 cut(s) 21, 215
PpsI GAGTC 2 cut(s) 21, 215
PscI ACATGT 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspPI GGNCC 1 cut(s) 7
RsaI GTAC 2 cut(s) 312, 435
RsaNI GTAC 2 cut(s) 311, 434
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 490, 541
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 2 cut(s) 21, 216
ScrFI CCNGG 2 cut(s) 574, 812
SetI ASST 9 cut(s) 39, 51, 104, 255, 453, 474, 516, 794, 807
SfaNI GCATC 2 cut(s) 12, 211
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 151, 536
SsiI CCGC 3 cut(s) 5, 235, 752
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 572, 810
StyI CCWWGG 2 cut(s) 417, 696
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 2 cut(s) 794, 807
TaqI TCGA 1 cut(s) 801
TasI AATT 2 cut(s) 151, 536
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 4 cut(s) 61, 96, 137, 742
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 1 cut(s) 665
TspDTI ATGAA 4 cut(s) 195, 552, 624, 801
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 2 cut(s) 151, 536
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 1 cut(s) 188
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.