Rh5BG184200

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000111
Physical Location & Seq
Forward (+)
20247089 .. 20256476
9388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG184200.1

Sequence Viewer

Length: 534 bp
ATGCCGGAGATCAGATCACCTACACAAGCTGGAACTTCAAGCTTGATAAAGAAAAATGCCAAAAGCTACCGGAAAACACACTTTCACTATTTAGGTGTTACGAAGTTGGTCACATCTGATATGTCGGTGACGACTGAAGTAGGCAAGCCATGCCTTCCGCAAGATATCATTGAAGAGATACTCTCTCGACTCCCTGCCAAGTCTGTGGGTCGATTCAGGATTTCAGGTGCGTATCAAAGTCATGGCACCATCTTACCACCCAACCAGACTTCATCGACTCCCACCTCAAGCGACAGAGACAGAAACTCATTTTCAGTTCTATTAGGTCTTTCTTCTCCTTGGACTATGAAGGTCAAGATATGGACCCTGGAGGGTCACCCTGTCATTGCTGCTCTTGATTTAGCAGAGGAGAAGTTCTCGATATTGTCCCCACCTGAATCTGTCAGAGATGATCGGGAATATAAAACTGGCGTTTTGAGAGGGTGTCTGTGTTTGCTCCAGCGGAATGAAGTAACTCCAAGATCCAATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

177

Amino Acids

19.59

Weight (kDa)

9.37

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 2 cut(s) 158, 502
AclWI GGATC 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 156
AgsI TTSAA 2 cut(s) 39, 173
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 3 cut(s) 29, 42, 66
AluI AGCT 3 cut(s) 29, 42, 66
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 3 cut(s) 9, 139, 368
AvaII GGWCC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 291
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 2 cut(s) 247, 365
BmrFI CCNGG 1 cut(s) 368
BplI GAGNNNNNCTC 4 cut(s) 167, 199, 401, 433
BpmI CTGGAG 2 cut(s) 389, 482
BpuEI CTTGAG 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 338, 366
BsaWI WCCGGW 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 338, 366
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 5, 70
BslFI GGGAC 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 412
Bsp143I GATC 4 cut(s) 9, 14, 451, 521
BspACI CCGC 2 cut(s) 158, 502
BspLI GGNNCC 2 cut(s) 247, 365
BspPI GGATC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 338, 366
BssMI GATC 4 cut(s) 9, 14, 451, 521
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 146
BstEII GGTNACC 1 cut(s) 374
BstKTI GATC 4 cut(s) 12, 17, 454, 524
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 4 cut(s) 9, 14, 451, 521
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 363
CviAII CATG 2 cut(s) 150, 242
CviJI RGCY 4 cut(s) 29, 42, 66, 148
CviKI_1 RGCY 4 cut(s) 29, 42, 66, 148
DpnI GATC 4 cut(s) 11, 16, 453, 523
DpnII GATC 4 cut(s) 9, 14, 451, 521
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 338
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 156
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 2 cut(s) 153, 245
FaiI YATR 6 cut(s) 122, 151, 243, 347, 361, 462
FaqI GGGAC 1 cut(s) 412
FatI CATG 2 cut(s) 149, 241
Fnu4HI GCNGC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 389, 482
HapII CCGG 2 cut(s) 5, 70
Hin1II CATG 2 cut(s) 153, 245
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 4 cut(s) 189, 213, 277, 437
HpaII CCGG 2 cut(s) 5, 70
HphI GGTGA 3 cut(s) 9, 139, 368
Hpy188I TCNGA 3 cut(s) 14, 118, 446
Hpy188III TCNNGA 6 cut(s) 186, 217, 355, 395, 418, 455
HpyAV CCTTC 2 cut(s) 164, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
Hsp92II CATG 2 cut(s) 153, 245
Kzo9I GATC 4 cut(s) 9, 14, 451, 521
LmnI GCTCC 1 cut(s) 501
Lsp1109I GCAGC 1 cut(s) 376
MaeIII GTNAC 5 cut(s) 97, 109, 127, 374, 511
MalI GATC 4 cut(s) 11, 16, 453, 523
MboI GATC 4 cut(s) 9, 14, 451, 521
MboII GAAGA 2 cut(s) 185, 324
MflI RGATCY 1 cut(s) 521
MlyI GAGTC 2 cut(s) 183, 271
MnlI CCTC 4 cut(s) 295, 364, 400, 473
MseI TTAA 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 2 cut(s) 5, 70
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 4 cut(s) 9, 14, 451, 521
NlaIII CATG 2 cut(s) 153, 245
NlaIV GGNNCC 2 cut(s) 247, 365
NmuCI GTSAC 3 cut(s) 109, 127, 374
PfeI GAWTC 2 cut(s) 213, 437
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 2 cut(s) 183, 271
PpsI GAGTC 2 cut(s) 183, 271
Psp6I CCWGG 1 cut(s) 366
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 247, 365
PspPI GGNCC 1 cut(s) 363
PsuI RGATCY 1 cut(s) 521
SaqAI TTAA 1 cut(s) 532
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 4 cut(s) 9, 14, 451, 521
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 2 cut(s) 183, 271
ScrFI CCNGG 1 cut(s) 368
SinI GGWCC 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SsiI CCGC 2 cut(s) 158, 502
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 338
TaqI TCGA 4 cut(s) 187, 211, 275, 419
TfiI GAWTC 2 cut(s) 213, 437
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TseFI GTSAC 3 cut(s) 109, 127, 374
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 3 cut(s) 109, 127, 374
TspDTI ATGAA 3 cut(s) 261, 362, 522
VpaK11BI GGWCC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.