FvH4_1g05231

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000111
Physical Location & Seq
Reverse (-)
2783601 .. 2784749
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05231.t1

Sequence Viewer

Length: 561 bp
ATGTACGATTGTCGTAACAAAAAGAAGAAGATGCAAGACGGTAGCCAAAACGTGGACCTTCCACCTGAGATGATGCATGAAATTTTTTCAAGGCTACCAGTGAAGCCCTTGTGTCGCTTCAAGCTTGTATCCAAGTCATGGGAGTCCCTAATCTCCGATCCTGATTTCGTCGCAAACTATTCCAAAGCCGCCTTTGAGAATGAGGATGTCTTCTTCAGAAGACGCCGCCTCCTCTTTACTAATATTATTGACTCTGGACAACATGGGATATACTCTTTGGATCTTGACCAGTTTCTCAGTGAGAATTCTAATGCTGGTGTTGATGGTCTAGTAGCAGCACCCACTGAGCTCGGCTTTGTTTACAATCTTGTTCAAAGAGGTGGATTTCCATACCCCTTTGTCCTTGGTCCCTGCAATGGCTTGTTCTTGGCCCGGTTATGTTACGGTAAATCATCATTAGTTATGTATAATTTCAATGATGACACATATTGGACTTTATCGATCGGCAAAGTTGGTGCTATTAGATGTGTTGGCATCTATGTGGAGACCCTGCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

187

Amino Acids

21.09

Weight (kDa)

6.72

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 7.8e-12 F-box domain
F-box-like PF12937 19 - 55 8.5e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 52, 138
AciI CCGC 2 cut(s) 189, 226
AclWI GGATC 2 cut(s) 152, 288
AcsI RAATTY 2 cut(s) 81, 304
AcuI CTGAAG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 52, 138, 416
AgsI TTSAA 4 cut(s) 90, 121, 374, 475
AluBI AGCT 2 cut(s) 124, 349
AluI AGCT 2 cut(s) 124, 349
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 2 cut(s) 152, 288
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 81, 304
AspS9I GGNCC 3 cut(s) 55, 407, 430
AsuC2I CCSGG 1 cut(s) 433
AvaII GGWCC 2 cut(s) 55, 407
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 202, 226
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 317
BciVI GTATCC 1 cut(s) 139
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 1 cut(s) 329
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 3 cut(s) 189, 226, 336
BlsI GCNGC 3 cut(s) 190, 227, 337
Bme1390I CCNGG 1 cut(s) 433
Bme18I GGWCC 2 cut(s) 55, 407
BmgT120I GGNCC 3 cut(s) 55, 407, 430
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 433
BmsI GCATC 3 cut(s) 21, 63, 543
BpiI GAAGAC 2 cut(s) 202, 226
BpuMI CCSGG 1 cut(s) 433
Bsa29I ATCGAT 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 3 cut(s) 213, 243, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 138, 416
Bse1I ACTGG 2 cut(s) 98, 289
Bse3DI GCAATG 1 cut(s) 421
BseCI ATCGAT 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 52, 138, 416
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 57, 310, 336
BseNI ACTGG 2 cut(s) 98, 289
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 1 cut(s) 431
BshVI ATCGAT 1 cut(s) 500
BsiEI CGRYCG 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 433
BslFI GGGAC 2 cut(s) 130, 393
BslI CCNNNNNNNGG 3 cut(s) 52, 138, 416
BsmAI GTCTC 1 cut(s) 539
BsmFI GGGAC 2 cut(s) 130, 393
BsnI GGCC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 3 cut(s) 157, 280, 501
BspACI CCGC 2 cut(s) 189, 226
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 3 cut(s) 58, 309, 337
BspDI ATCGAT 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 2 cut(s) 152, 288
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 2 cut(s) 98, 289
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 3 cut(s) 157, 280, 501
BssNI GRCGYC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 403
Bst4CI ACNGT 2 cut(s) 41, 446
BstACI GRCGYC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 66, 296, 345
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 3 cut(s) 160, 283, 504
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 3 cut(s) 157, 280, 501
BstMCI CGRYCG 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 2 cut(s) 202, 226
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 500
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 431
BsuTUI ATCGAT 1 cut(s) 500
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 105, 304, 342
Cfr13I GGNCC 3 cut(s) 55, 407, 430
ClaI ATCGAT 1 cut(s) 500
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 77, 138, 263
CviJI RGCY 9 cut(s) 45, 94, 106, 124, 188, 349, 354, 420, 431
CviKI_1 RGCY 9 cut(s) 45, 94, 106, 124, 188, 349, 354, 420, 431
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 66, 296, 345
DpnI GATC 3 cut(s) 159, 282, 503
DpnII GATC 3 cut(s) 157, 280, 501
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 55, 407
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 3 cut(s) 80, 141, 266
FaqI GGGAC 2 cut(s) 130, 393
FatI CATG 3 cut(s) 76, 137, 262
Fnu4HI GCNGC 3 cut(s) 189, 226, 336
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 3 cut(s) 189, 226, 336
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 189, 226, 336
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 433
HgaI GACGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 3 cut(s) 80, 141, 266
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 143, 251
HpaII CCGG 1 cut(s) 433
Hpy166II GTNNAC 2 cut(s) 55, 361
Hpy188I TCNGA 2 cut(s) 157, 218
Hpy188III TCNNGA 3 cut(s) 161, 255, 284
Hpy8I GTNNAC 2 cut(s) 55, 361
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 41, 446
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 34, 76, 414
HpyF3I CTNAG 3 cut(s) 66, 296, 345
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 3 cut(s) 80, 141, 266
Kzo9I GATC 3 cut(s) 157, 280, 501
LpnPI CCDG 8 cut(s) 78, 111, 174, 240, 300, 302, 424, 446
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 3 cut(s) 21, 63, 543
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 14, 440
MalI GATC 3 cut(s) 159, 282, 503
MboI GATC 3 cut(s) 157, 280, 501
MboII GAAGA 5 cut(s) 37, 40, 202, 205, 231
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 81, 304, 469
MlyI GAGTC 2 cut(s) 152, 245
MnlI CCTC 4 cut(s) 196, 239, 242, 371
Mph1103I ATGCAT 1 cut(s) 78
MseI TTAA 1 cut(s) 559
MslI CAYNNNNRTG 1 cut(s) 539
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 433
NciI CCSGG 1 cut(s) 433
NdeII GATC 3 cut(s) 157, 280, 501
NlaIII CATG 3 cut(s) 80, 141, 266
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 330
NsiI ATGCAT 1 cut(s) 78
PflMI CCANNNNNTGG 2 cut(s) 52, 138
PkrI GCNGC 3 cut(s) 190, 227, 337
Ple19I CGATCG 1 cut(s) 504
PleI GAGTC 2 cut(s) 151, 245
PpsI GAGTC 2 cut(s) 151, 245
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 3 cut(s) 55, 407, 430
PsuI RGATCY 1 cut(s) 280
PvuI CGATCG 1 cut(s) 504
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 559
SatI GCNGC 3 cut(s) 189, 226, 336
Sau3AI GATC 3 cut(s) 157, 280, 501
Sau96I GGNCC 3 cut(s) 55, 407, 430
SchI GAGTC 2 cut(s) 152, 245
ScrFI CCNGG 1 cut(s) 433
SduI GDGCHC 1 cut(s) 351
SetI ASST 6 cut(s) 54, 60, 67, 126, 351, 382
SfaNI GCATC 3 cut(s) 21, 63, 543
SinI GGWCC 2 cut(s) 55, 407
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 3 cut(s) 81, 304, 469
SsiI CCGC 2 cut(s) 189, 226
SspI AATATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 431
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 2 cut(s) 41, 446
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 500
TasI AATT 3 cut(s) 81, 304, 469
TauI GCSGC 2 cut(s) 191, 228
Tru1I TTAA 1 cut(s) 559
Tru9I TTAA 1 cut(s) 559
TscAI CASTG 3 cut(s) 105, 304, 349
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 3 cut(s) 105, 304, 349
Van91I CCANNNNNTGG 2 cut(s) 52, 138
VpaK11BI GGWCC 2 cut(s) 55, 407
XapI RAATTY 2 cut(s) 81, 304
XspI CTAG 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.