FvH4_1g05232

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000111
Physical Location & Seq
Reverse (-)
2785712 .. 2786829
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05232.t1

Sequence Viewer

Length: 429 bp
ATGCATGACATTTTTTCAAGGCTGCCACCCAAGTCTTTGTGCCGGTTCAAGTGTGTATCAAAGCCATGGCGGTCCATGATCTCCGATCATGTTTTTGTTACTAAGTACAATAAGGATGTATCCCGGCGACGGCGACTCATGTTTACTTCTGTTGAGTCGACAGATCATTGGCTTTACTGCTTGGATCTTAACAAGTTTATCTATGAGAATCATAATGATGATGTTGGTGGTTCAACAGCAGCACCCTCTGAGCTCGACTTTGTTTACAATCAACTTCCATCATCCTTCATTATGTACAATTTTAGCGATGGGAAATTTTGGACTTTACCGATTGGCAATGTTGGTGATATTATTAGTACTGGTGTCTACATGGAGACCCTGCCTACCTCAACTCTATCGATCAAGAACAATATCTTTCAAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

143

Amino Acids

16.45

Weight (kDa)

8.45

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 32 1.3e-08 F-box domain
F-box-like PF12937 2 - 30 1.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 158, 366
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 3 cut(s) 107, 296, 358
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 4 cut(s) 18, 49, 234, 419
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 22, 239
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 9, 251
BccI CCATC 2 cut(s) 286, 302
BceAI ACGGC 1 cut(s) 146
BciVI GTATCC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 368
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 2 cut(s) 23, 240
BlsI GCNGC 2 cut(s) 24, 241
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 124
Bsa29I ATCGAT 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 343
BseCI ATCGAT 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 121, 281
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 2 cut(s) 9, 251
BshVI ATCGAT 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 43, 124
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 5 cut(s) 78, 85, 163, 184, 399
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 241
BspDI ATCGAT 1 cut(s) 398
BspPI GGATC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 5 cut(s) 78, 85, 163, 184, 399
BssT1I CCWWGG 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 102, 249
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 121, 281
BstKTI GATC 5 cut(s) 81, 88, 166, 187, 402
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 5 cut(s) 78, 85, 163, 184, 399
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 9, 251
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 398
BsuI GTATCC 1 cut(s) 130
BsuTUI ATCGAT 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 121, 281
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 398
Csp6I GTAC 3 cut(s) 106, 295, 357
CviAII CATG 6 cut(s) 5, 66, 76, 89, 139, 370
CviJI RGCY 4 cut(s) 22, 64, 172, 253
CviKI_1 RGCY 4 cut(s) 22, 64, 172, 253
CviQI GTAC 3 cut(s) 106, 295, 357
DdeI CTNAG 2 cut(s) 102, 249
DpnI GATC 5 cut(s) 80, 87, 165, 186, 401
DpnII GATC 5 cut(s) 78, 85, 163, 184, 399
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 65
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 6 cut(s) 8, 69, 79, 92, 142, 373
FaiI YATR 9 cut(s) 6, 67, 77, 90, 140, 204, 213, 293, 371
FatI CATG 6 cut(s) 4, 65, 75, 88, 138, 369
FblI GTMKAC 2 cut(s) 158, 366
Fnu4HI GCNGC 2 cut(s) 23, 240
FokI GGATG 2 cut(s) 128, 268
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 23, 240
GluI GCNGC 2 cut(s) 23, 240
HapII CCGG 2 cut(s) 43, 124
Hin1II CATG 6 cut(s) 8, 69, 79, 92, 142, 373
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 3 cut(s) 135, 155, 208
HpaII CCGG 2 cut(s) 43, 124
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 4 cut(s) 144, 159, 265, 367
Hpy188I TCNGA 2 cut(s) 85, 250
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 4 cut(s) 144, 159, 265, 367
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 102, 249
Hsp92II CATG 6 cut(s) 8, 69, 79, 92, 142, 373
Kzo9I GATC 5 cut(s) 78, 85, 163, 184, 399
LpnPI CCDG 4 cut(s) 56, 137, 345, 392
Lsp1109I GCAGC 2 cut(s) 9, 251
MaeIII GTNAC 1 cut(s) 97
MalI GATC 5 cut(s) 80, 87, 165, 186, 401
MboI GATC 5 cut(s) 78, 85, 163, 184, 399
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 298, 314
MlyI GAGTC 2 cut(s) 129, 164
MnlI CCTC 2 cut(s) 256, 397
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 43, 124
MspR9I CCNGG 1 cut(s) 124
NciI CCSGG 1 cut(s) 124
NcoI CCATGG 1 cut(s) 65
NdeII GATC 5 cut(s) 78, 85, 163, 184, 399
NlaIII CATG 6 cut(s) 8, 69, 79, 92, 142, 373
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 24, 241
PleI GAGTC 2 cut(s) 129, 163
PpsI GAGTC 2 cut(s) 129, 163
Psp124BI GAGCTC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 3 cut(s) 107, 296, 358
RsaNI GTAC 3 cut(s) 106, 295, 357
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 23, 240
Sau3AI GATC 5 cut(s) 78, 85, 163, 184, 399
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 2 cut(s) 129, 164
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 255
SetI ASST 2 cut(s) 255, 389
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 2 cut(s) 298, 314
SsiI CCGC 1 cut(s) 70
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 65
TaqI TCGA 3 cut(s) 158, 255, 398
TasI AATT 2 cut(s) 298, 314
TatI WGTACW 3 cut(s) 105, 294, 356
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 2 cut(s) 22, 239
TspDTI ATGAA 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 314
XmiI GTMKAC 2 cut(s) 158, 366
ZrmI AGTACT 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.