Rorug07G0265700

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000111
Physical Location & Seq
Forward (+)
25107744 .. 25109634
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0265700.1

Sequence Viewer

Length: 1560 bp
ATGGCAAATGAGATATGGATCGTTCCGTTTTTTGGTCAGGGCCATCTCTTCCCTGTAATGGAGCTCTGCAAGCACATGGCCTCCAGAAACTTCAAAGCCGTTTTGGTCATCTCTTCCAACCTCTCCTCCTCCATACCCTCATCTCTCCGCCAATACCCACTCGTCGAAATCGCTGAGATTTCTGAAGCGCCACCGTCTGGTCCGCCGCAGGAGCCGAGTTCTCAGCCGCATCACCGCCACCACGGCCAGATGGCAGTCGGGCTTGAGAAGCTCCTCTCGACCCGAAACGAGAGTCCGGATTCAGTCCGACCCCTTTGTGCAGTTCTTGACAACATGATGAGCTGGACTTCCGAGACTTTTCACAAGTTCGAGATTCCGGCGGTCACCTTTTTCACTTCCGGAGCCTGCTCCGCCGCCATGGAGTATGGCCTGTGGAAGGCCCACTCGATAGATGTCAAACCGGGGGAGACCCGTTTGCTACCCGGGTTACCCGAAGAGATGGCTGTGACGGTTTCGGATATTAAACGGCAGTCTCGTCGGCCACCATTCCCTATTGATGGAGGCGGCCCGCCAGGAGGGCCACCATTCCCTATTGGTGGAGGCGGCCCGCCAGGAGGTCAGGGAGCAGGCTTTCCTCCTCATGGACCACCACATGTTGGGCCTCGCCCGAGAAGAATGGGTCCGCCAAAGCTCGGTGACCAACCACTATGGTTAGAGGAGATCGAGCCGTCTATTGGAGTGATGATCAACACTTGTGACGAGCTAGAGCATCCGTTTATCGAATACATCTCCAACAAGATTGAAAAACCCGTTTGGGGAGTGGGCCCGATGTTACCCGAGCAATATTGGAAATCGGCCGGTTCGGTTCTCCATGATCACGAAGTTCGAACCGATCGGAAGTCGAACTTCACCGAATACGAGGTAAATGAGTGGCTAGATTCAAAACCACGTGGATCCGTGTTGTACGTTTCATTTGGAAGCGAGGTTGGTCCTACCAAAGAGGAGTACGAAATACTAGCCGAGGCACTGGAAGCGTCGACCCGGCCATTCATATGGGCGGTCCAAGTCACTGCAGGAAGACCTCCGGGTCCTCCCGGCCTGTCACAACCCGGATCAGAGGCCTATTTTCCACACGGGCTAGATACGCGTGTCGGAAAAAGAGGCTTGATCATACACGGGTGGGCCCCGCAGCTCTTGATACTGAGCCACCCATCAACGGGAGGATTCCTTTCGCACTGTGGGTGGAATTCAACGGTGGAAGCAATTGGGCGTGGAGTCCCATTCTTGGCGTGGCCAATTAGAGGGGATCAACACATGAACGCTAAATTGGTAGCGAGCTATCTCAAAGTTGGGTATCTGATTTCTGAGGATTTATCAGAGACAATAAAGAAGGAGGATATAACAAGAGGAATTGAGAAGCTACTGAGTGACGAAGAGATGAAGCAACGAGCTGTGAAGCTTAGTGCTAAGTTTGAGCATGGCTTTCCAACAAGTTCTGTCGCGGCTTTAGATGCCTTTGGAGACTTCCTTAGACATAAAAACAAAGCATCTTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

519

Amino Acids

56.84

Weight (kDa)

6.17

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 307 - 489 1.7e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1086
AccB7I CCANNNNNTGG 2 cut(s) 197, 656
AccI GTMKAC 1 cut(s) 1037
AccII CGCG 2 cut(s) 1147, 1502
AccIII TCCGGA 2 cut(s) 295, 398
AclWI GGATC 5 cut(s) 26, 948, 961, 1120, 1314
AcoI YGGCCR 5 cut(s) 244, 539, 855, 1043, 1292
AcsI RAATTY 1 cut(s) 1246
AcuI CTGAAG 1 cut(s) 204
AcvI CACGTG 1 cut(s) 950
AfaI GTAC 2 cut(s) 965, 1007
AflIII ACRYGT 2 cut(s) 652, 1145
AgsI TTSAA 4 cut(s) 94, 803, 942, 1251
AjnI CCWGG 2 cut(s) 571, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 1310, 1342
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 5 cut(s) 347, 461, 537, 1373, 1515
AlwI GGATC 5 cut(s) 26, 948, 961, 1120, 1314
Ama87I CYCGRG 3 cut(s) 482, 667, 836
Aor13HI TCCGGA 2 cut(s) 295, 398
ApaI GGGCCC 2 cut(s) 827, 1186
ApeKI GCWGC 1 cut(s) 1189
ApoI RAATTY 1 cut(s) 1246
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AspLEI GCGC 1 cut(s) 190
AsuC2I CCSGG 7 cut(s) 462, 483, 484, 1042, 1086, 1095, 1110
AsuHPI GGTGA 4 cut(s) 224, 376, 707, 901
AsuII TTCGAA 1 cut(s) 886
AvaI CYCGRG 3 cut(s) 482, 667, 836
AvaII GGWCC 6 cut(s) 200, 644, 680, 989, 1060, 1088
BaeGI GKGCMC 2 cut(s) 827, 1186
BaeI ACNNNNGTAYC 2 cut(s) 1134, 1167
BalI TGGCCA 1 cut(s) 1294
BamHI GGATCC 1 cut(s) 953
BanII GRGCYC 3 cut(s) 66, 827, 1186
BbrPI CACGTG 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 1084
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 1201
BccI CCATC 5 cut(s) 51, 244, 493, 551, 1219
BceAI ACGGC 4 cut(s) 83, 259, 542, 712
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 2 cut(s) 573, 612
BclI TGATCA 3 cut(s) 744, 874, 1167
BcnI CCSGG 7 cut(s) 462, 483, 484, 1042, 1086, 1095, 1110
BcoDI GTCTC 5 cut(s) 347, 461, 537, 1373, 1515
BfaI CTAG 4 cut(s) 764, 935, 1016, 1139
BfmI CTRYAG 1 cut(s) 1071
BfoI RGCGCY 1 cut(s) 191
BglI GCCNNNNNGGC 2 cut(s) 243, 577
BisI GCNGC 7 cut(s) 206, 227, 414, 565, 604, 1190, 1503
BlsI GCNGC 7 cut(s) 207, 228, 415, 566, 605, 1191, 1504
Bme1390I CCNGG 9 cut(s) 462, 483, 484, 573, 612, 1042, 1086, 1095, 1110
Bme18I GGWCC 6 cut(s) 200, 644, 680, 989, 1060, 1088
BmeT110I CYCGRG 3 cut(s) 482, 667, 836
BmiI GGNNCC 8 cut(s) 213, 403, 681, 825, 955, 1089, 1184, 1185
BmrFI CCNGG 9 cut(s) 462, 483, 484, 573, 612, 1042, 1086, 1095, 1110
BmsI GCATC 4 cut(s) 238, 778, 1501, 1556
BpiI GAAGAC 1 cut(s) 1084
BpmI CTGGAG 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 886
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 7 cut(s) 462, 483, 484, 1042, 1086, 1095, 1110
BsaAI YACGTR 1 cut(s) 950
BsaBI GATNNNNATC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 5 cut(s) 241, 417, 461, 482, 1020
BsaWI WCCGGW 2 cut(s) 295, 398
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 110, 140
Bse118I RCCGGY 1 cut(s) 857
Bse1I ACTGG 1 cut(s) 1032
Bse8I GATNNNNATC 1 cut(s) 17
BseAI TCCGGA 2 cut(s) 295, 398
BseBI CCWGG 2 cut(s) 573, 612
BseDI CCNNGG 5 cut(s) 241, 417, 461, 482, 1020
BseGI GGATG 1 cut(s) 769
BseJI GATNNNNATC 1 cut(s) 17
BseMII CTCAG 5 cut(s) 165, 236, 1193, 1356, 1415
BseNI ACTGG 1 cut(s) 1032
BseRI GAGGAG 6 cut(s) 115, 118, 263, 627, 731, 1016
BseSI GKGCMC 2 cut(s) 827, 1186
BseX3I CGGCCG 1 cut(s) 855
BseXI GCAGC 1 cut(s) 1201
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 2 cut(s) 1147, 1502
Bsh1285I CGRYCG 2 cut(s) 858, 895
BsiEI CGRYCG 2 cut(s) 858, 895
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 3 cut(s) 482, 667, 836
BslFI GGGAC 1 cut(s) 1262
BsmAI GTCTC 5 cut(s) 347, 461, 537, 1373, 1515
BsmFI GGGAC 1 cut(s) 1262
Bso31I GGTCTC 1 cut(s) 461
BsoBI CYCGRG 3 cut(s) 482, 667, 836
Bsp119I TTCGAA 1 cut(s) 886
Bsp120I GGGCCC 2 cut(s) 823, 1182
Bsp1286I GDGCHC 3 cut(s) 66, 827, 1186
Bsp13I TCCGGA 2 cut(s) 295, 398
Bsp143I GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
Bsp19I CCATGG 1 cut(s) 417
BspCNI CTCAG 5 cut(s) 166, 235, 1194, 1357, 1416
BspEI TCCGGA 2 cut(s) 295, 398
BspFNI CGCG 2 cut(s) 1147, 1502
BspLI GGNNCC 8 cut(s) 213, 403, 681, 825, 955, 1089, 1184, 1185
BspMAI CTGCAG 1 cut(s) 1075
BspPI GGATC 5 cut(s) 26, 948, 961, 1120, 1314
BspT104I TTCGAA 1 cut(s) 886
BspTNI GGTCTC 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 857
BsrI ACTGG 1 cut(s) 1032
BssAI RCCGGY 1 cut(s) 857
BssECI CCNNGG 5 cut(s) 241, 417, 461, 482, 1020
BssMI GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 573, 612
Bst4CI ACNGT 4 cut(s) 195, 511, 1238, 1255
Bst6I CTCTTC 4 cut(s) 53, 118, 489, 1428
BstBAI YACGTR 1 cut(s) 950
BstBI TTCGAA 1 cut(s) 886
BstC8I GCNNGC 6 cut(s) 71, 406, 569, 608, 628, 1336
BstDEI CTNAG 8 cut(s) 174, 222, 1202, 1365, 1424, 1460, 1467, 1529
BstDSI CCRYGG 2 cut(s) 241, 417
BstEII GGTNACC 3 cut(s) 382, 486, 695
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 2 cut(s) 1147, 1502
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 9 cut(s) 21, 723, 747, 877, 895, 956, 1115, 1170, 1309
BstMAI GTCTC 5 cut(s) 347, 461, 537, 1373, 1515
BstMBI GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
BstMCI CGRYCG 2 cut(s) 858, 895
BstMWI GCNNNNNNNGC 9 cut(s) 70, 211, 243, 268, 410, 577, 1031, 1144, 1511
BstNI CCWGG 2 cut(s) 573, 612
BstNSI RCATGY 1 cut(s) 656
BstPI GGTNACC 3 cut(s) 382, 486, 695
BstSCI CCNGG 9 cut(s) 460, 481, 482, 571, 610, 1040, 1084, 1093, 1108
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 2 cut(s) 827, 1186
BstUI CGCG 2 cut(s) 1147, 1502
BstV1I GCAGC 1 cut(s) 1201
BstV2I GAAGAC 1 cut(s) 1084
BstX2I RGATCY 1 cut(s) 953
BstXI CCANNNNNNTGG 1 cut(s) 1053
BstYI RGATCY 1 cut(s) 953
BstZI CGGCCG 1 cut(s) 855
BtgI CCRYGG 2 cut(s) 241, 417
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 3 cut(s) 1025, 1068, 1234
Cac8I GCNNGC 6 cut(s) 71, 406, 569, 608, 628, 1336
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 857
Cfr9I CCCGGG 1 cut(s) 482
CseI GACGC 1 cut(s) 1023
Csp6I GTAC 2 cut(s) 964, 1006
CviAII CATG 8 cut(s) 76, 334, 418, 641, 653, 872, 1315, 1478
CviQI GTAC 2 cut(s) 964, 1006
DdeI CTNAG 8 cut(s) 174, 222, 1202, 1365, 1424, 1460, 1467, 1529
DpnI GATC 9 cut(s) 20, 722, 746, 876, 894, 955, 1114, 1169, 1308
DpnII GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
DrdI GACNNNNNNGTC 1 cut(s) 1086
DseDI GACNNNNNNGTC 1 cut(s) 1086
EaeI YGGCCR 5 cut(s) 244, 539, 855, 1043, 1292
EagI CGGCCG 1 cut(s) 855
Eam1104I CTCTTC 4 cut(s) 53, 118, 489, 1428
EarI CTCTTC 4 cut(s) 53, 118, 489, 1428
EciI GGCGGA 4 cut(s) 137, 192, 400, 672
Ecl136II GAGCTC 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 855
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 1121
Eco24I GRGCYC 3 cut(s) 66, 827, 1186
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 6 cut(s) 200, 644, 680, 989, 1060, 1088
Eco52I CGGCCG 1 cut(s) 855
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 204
Eco72I CACGTG 1 cut(s) 950
Eco88I CYCGRG 3 cut(s) 482, 667, 836
Eco91I GGTNACC 3 cut(s) 382, 486, 695
EcoICRI GAGCTC 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoO109I RGGNCCY 2 cut(s) 1088, 1183
EcoO65I GGTNACC 3 cut(s) 382, 486, 695
EcoRI GAATTC 1 cut(s) 1246
EcoRII CCWGG 2 cut(s) 571, 610
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 3 cut(s) 66, 827, 1186
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 8 cut(s) 79, 337, 421, 644, 656, 875, 1318, 1481
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 1 cut(s) 1262
FatI CATG 8 cut(s) 75, 333, 417, 640, 652, 871, 1314, 1477
FauI CCCGC 3 cut(s) 576, 615, 1194
FauNDI CATATG 1 cut(s) 1052
FbaI TGATCA 3 cut(s) 744, 874, 1167
FblI GTMKAC 1 cut(s) 1037
Fnu4HI GCNGC 7 cut(s) 206, 227, 414, 565, 604, 1190, 1503
FokI GGATG 1 cut(s) 756
FriOI GRGCYC 3 cut(s) 66, 827, 1186
Fsp4HI GCNGC 7 cut(s) 206, 227, 414, 565, 604, 1190, 1503
FspBI CTAG 4 cut(s) 764, 935, 1016, 1139
GlaI GCGC 1 cut(s) 189
GluI GCNGC 7 cut(s) 206, 227, 414, 565, 604, 1190, 1503
GsuI CTGGAG 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 191
HgaI GACGC 1 cut(s) 1023
HhaI GCGC 1 cut(s) 190
Hin1II CATG 8 cut(s) 79, 337, 421, 644, 656, 875, 1318, 1481
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HindIII AAGCTT 1 cut(s) 1457
HinfI GANTC 6 cut(s) 292, 299, 373, 938, 1224, 1275
HphI GGTGA 4 cut(s) 224, 376, 707, 901
Hpy166II GTNNAC 1 cut(s) 1038
Hpy188III TCNNGA 8 cut(s) 84, 277, 296, 326, 370, 399, 878, 1195
Hpy8I GTNNAC 1 cut(s) 1038
Hpy99I CGWCG 3 cut(s) 167, 540, 1039
HpyAV CCTTC 2 cut(s) 430, 1384
HpyCH4III ACNGT 4 cut(s) 195, 511, 1238, 1255
HpyCH4IV ACGT 2 cut(s) 949, 966
HpyCH4V TGCA 3 cut(s) 69, 320, 1073
HpyF10VI GCNNNNNNNGC 9 cut(s) 70, 211, 243, 268, 410, 577, 1031, 1144, 1511
HpyF3I CTNAG 8 cut(s) 174, 222, 1202, 1365, 1424, 1460, 1467, 1529
HpySE526I ACGT 2 cut(s) 949, 966
Hsp92II CATG 8 cut(s) 79, 337, 421, 644, 656, 875, 1318, 1481
HspAI GCGC 1 cut(s) 188
Kpn2I TCCGGA 2 cut(s) 295, 398
Ksp22I TGATCA 3 cut(s) 744, 874, 1167
Kzo9I GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
LmnI GCTCC 6 cut(s) 61, 211, 276, 401, 413, 623
Lsp1109I GCAGC 1 cut(s) 1201
LweI GCATC 4 cut(s) 238, 778, 1501, 1556
MaeI CTAG 4 cut(s) 764, 935, 1016, 1139
MaeII ACGT 2 cut(s) 949, 966
MaeIII GTNAC 9 cut(s) 382, 486, 505, 695, 755, 831, 1066, 1101, 1427
MalI GATC 9 cut(s) 20, 722, 746, 876, 894, 955, 1114, 1169, 1308
MboI GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
MboII GAAGA 7 cut(s) 40, 105, 506, 684, 1089, 1445, 1542
MfeI CAATTG 1 cut(s) 1263
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 3 cut(s) 66, 827, 1186
MlsI TGGCCA 1 cut(s) 1294
MluCI AATT 5 cut(s) 1246, 1263, 1296, 1325, 1410
MluI ACGCGT 1 cut(s) 1145
MluNI TGGCCA 1 cut(s) 1294
MlyI GAGTC 2 cut(s) 301, 1284
MmeI TCCRAC 5 cut(s) 141, 331, 816, 1132, 1511
Mox20I TGGCCA 1 cut(s) 1294
MroI TCCGGA 2 cut(s) 295, 398
MscI TGGCCA 1 cut(s) 1294
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 1051
Msp20I TGGCCA 1 cut(s) 1294
MspR9I CCNGG 9 cut(s) 462, 483, 484, 573, 612, 1042, 1086, 1095, 1110
MunI CAATTG 1 cut(s) 1263
MvaI CCWGG 2 cut(s) 573, 612
MvnI CGCG 2 cut(s) 1147, 1502
MwoI GCNNNNNNNGC 9 cut(s) 70, 211, 243, 268, 410, 577, 1031, 1144, 1511
NciI CCSGG 7 cut(s) 462, 483, 484, 1042, 1086, 1095, 1110
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 1052
NdeII GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
NlaIII CATG 8 cut(s) 79, 337, 421, 644, 656, 875, 1318, 1481
NlaIV GGNNCC 8 cut(s) 213, 403, 681, 825, 955, 1089, 1184, 1185
NmeAIII GCCGAG 2 cut(s) 240, 1045
NmuCI GTSAC 7 cut(s) 382, 505, 695, 755, 1066, 1101, 1427
NspI RCATGY 1 cut(s) 656
NspV TTCGAA 1 cut(s) 886
PceI AGGCCT 1 cut(s) 1121
PciI ACATGT 1 cut(s) 652
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PfeI GAWTC 4 cut(s) 299, 373, 938, 1224
PflMI CCANNNNNTGG 2 cut(s) 197, 656
PkrI GCNGC 7 cut(s) 207, 228, 415, 566, 605, 1191, 1504
Ple19I CGATCG 1 cut(s) 895
PleI GAGTC 2 cut(s) 300, 1283
PmaCI CACGTG 1 cut(s) 950
PmlI CACGTG 1 cut(s) 950
PpsI GAGTC 2 cut(s) 300, 1283
Ppu21I YACGTR 1 cut(s) 950
PpuMI RGGWCCY 1 cut(s) 1088
PscI ACATGT 1 cut(s) 652
Psp124BI GAGCTC 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 1088
Psp6I CCWGG 2 cut(s) 571, 610
PspCI CACGTG 1 cut(s) 950
PspEI GGTNACC 3 cut(s) 382, 486, 695
PspGI CCWGG 2 cut(s) 571, 610
PspN4I GGNNCC 8 cut(s) 213, 403, 681, 825, 955, 1089, 1184, 1185
PspOMI GGGCCC 2 cut(s) 823, 1182
PspPPI RGGWCCY 1 cut(s) 1088
PstI CTGCAG 1 cut(s) 1075
PsuI RGATCY 1 cut(s) 953
PvuI CGATCG 1 cut(s) 895
RsaI GTAC 2 cut(s) 965, 1007
RsaNI GTAC 2 cut(s) 964, 1006
RseI CAYNNNNRTG 1 cut(s) 1051
SacI GAGCTC 1 cut(s) 66
SalI GTCGAC 1 cut(s) 1036
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 7 cut(s) 206, 227, 414, 565, 604, 1190, 1503
Sau3AI GATC 9 cut(s) 18, 720, 744, 874, 892, 953, 1112, 1167, 1306
SchI GAGTC 2 cut(s) 301, 1284
ScrFI CCNGG 9 cut(s) 462, 483, 484, 573, 612, 1042, 1086, 1095, 1110
SduI GDGCHC 3 cut(s) 66, 827, 1186
SfaNI GCATC 4 cut(s) 238, 778, 1501, 1556
SfcI CTRYAG 1 cut(s) 1071
SfuI TTCGAA 1 cut(s) 886
SinI GGWCC 6 cut(s) 200, 644, 680, 989, 1060, 1088
SmaI CCCGGG 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 1051
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 5 cut(s) 1246, 1263, 1296, 1325, 1410
SseBI AGGCCT 1 cut(s) 1121
SspI AATATT 1 cut(s) 845
SspMI CTAG 4 cut(s) 764, 935, 1016, 1139
SstI GAGCTC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 1121
StyD4I CCNGG 9 cut(s) 460, 481, 482, 571, 610, 1040, 1084, 1093, 1108
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 4 cut(s) 195, 511, 1238, 1255
TaiI ACGT 2 cut(s) 952, 969
TaqI TCGA 9 cut(s) 165, 278, 369, 446, 723, 780, 886, 902, 1037
TasI AATT 5 cut(s) 1246, 1263, 1296, 1325, 1410
TauI GCSGC 6 cut(s) 208, 229, 416, 567, 606, 1505
TfiI GAWTC 4 cut(s) 299, 373, 938, 1224
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 3 cut(s) 1032, 1075, 1241
TseFI GTSAC 7 cut(s) 382, 505, 695, 755, 1066, 1101, 1427
TseI GCWGC 1 cut(s) 1189
Tsp45I GTSAC 7 cut(s) 382, 505, 695, 755, 1066, 1101, 1427
TspDTI ATGAA 4 cut(s) 960, 1039, 1331, 1454
TspGWI ACGGA 3 cut(s) 15, 762, 946
TspMI CCCGGG 1 cut(s) 482
TspRI CASTG 3 cut(s) 1032, 1075, 1241
Van91I CCANNNNNTGG 2 cut(s) 197, 656
VpaK11BI GGWCC 6 cut(s) 200, 644, 680, 989, 1060, 1088
XagI CCTNNNNNAGG 1 cut(s) 434
XapI RAATTY 1 cut(s) 1246
XceI RCATGY 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 1287
XmaI CCCGGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 1037
XspI CTAG 4 cut(s) 764, 935, 1016, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.