RLG00000036280

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
78392865 .. 78393608
744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036280

Sequence Viewer

Length: 645 bp
ATGCCTTGTTGTTGTTCCAGTCAAATGAGAGGTTTTCCTTGTTTAACCAGGGAATCCAAGGTAGTACCTGAGTTTCCAAGACTTGGTCCATGGAGTAGAATTTATGCGAAGCTCTATGGATTTGGCTTTGATCCATCCACCCAAGATTACAAGATGGTTTATGGGATTAGCGGGGTTTGCTCTACAACCGAACTTAAGTTTAGTATCTATTCATTGAAAACTGGTTCTTGGCGAGTGATTGAGAAGGGATATCCCTATCAAAGTTTACATCATGAGGAGGAAGTGCAAGAGATTCCACTACCGCCTCATGTCAATATCGAAGGGGAAGATGTTTATTTAAGTGTCTTCAGAGACTGCCTGTGTATGATACTGGGGTATAATGAGGAGCTTTGGGTCATGAAGGAATATGGAGTGAGAGAGTCTTGGACTAAAATAAGGATATCCATCCCGCCTTGTCAGTGGTTACACTCGGGGTTCAGGAAGAAAAATTATGATCTACTGCTGTTGGAAGATGCTGAAGACAAGTTGGTTCTGCTCAATTTTGATGAGGACACCTTTCGCAATCATGGAGTTTTGCAAGTTGGTTATGTTGTGGTCTACTTGGAGAGCCTTGTTTCACCCAATTACTTTGGCATCACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

24.84

Weight (kDa)

5.3

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AccI GTMKAC 1 cut(s) 597
AciI CCGC 3 cut(s) 171, 302, 449
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 331, 537
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 83
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 112, 388
AluI AGCT 2 cut(s) 112, 388
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 354
Ama87I CYCGRG 1 cut(s) 469
ApoI RAATTY 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 609
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 359, 392
BbsI GAAGAC 2 cut(s) 337, 525
BccI CCATC 3 cut(s) 142, 148, 452
BciT130I CCWGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 380
BmsI GCATC 1 cut(s) 502
BmuI ACTGGG 1 cut(s) 380
BpiI GAAGAC 2 cut(s) 337, 525
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 48, 57, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 18, 226, 375
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 3 cut(s) 48, 57, 89
BseGI GGATG 2 cut(s) 134, 444
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 3 cut(s) 18, 226, 375
BseRI GAGGAG 2 cut(s) 290, 398
BsiHKCI CYCGRG 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 345
BsoBI CYCGRG 1 cut(s) 469
Bsp143I GATC 2 cut(s) 130, 493
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 3 cut(s) 171, 302, 449
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 2 cut(s) 271, 396
BspPI GGATC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 194
BsrI ACTGG 3 cut(s) 18, 226, 375
BssECI CCNNGG 3 cut(s) 48, 57, 89
BssMI GATC 2 cut(s) 130, 493
BssT1I CCWWGG 2 cut(s) 57, 89
Bst2UI CCWGG 1 cut(s) 49
BstAFI CTTAAG 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 134, 444
BstKTI GATC 2 cut(s) 133, 496
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 2 cut(s) 130, 493
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstV2I GAAGAC 2 cut(s) 337, 525
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 2 cut(s) 134, 444
BtsIMutI CAGTG 2 cut(s) 464, 636
CaiI CAGNNNCTG 1 cut(s) 354
CciI TCATGA 2 cut(s) 271, 396
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 65
CviAII CATG 5 cut(s) 90, 272, 308, 397, 566
CviJI RGCY 4 cut(s) 112, 126, 388, 609
CviKI_1 RGCY 4 cut(s) 112, 126, 388, 609
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 132, 495
DpnII GATC 2 cut(s) 130, 493
Eco130I CCWWGG 2 cut(s) 57, 89
Eco32I GATATC 2 cut(s) 251, 441
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 331, 537
Eco88I CYCGRG 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 47
EcoRV GATATC 2 cut(s) 251, 441
EcoT14I CCWWGG 2 cut(s) 57, 89
ErhI CCWWGG 2 cut(s) 57, 89
FaeI CATG 5 cut(s) 93, 275, 311, 400, 569
FatI CATG 5 cut(s) 89, 271, 307, 396, 565
FauI CCCGC 2 cut(s) 164, 456
FblI GTMKAC 1 cut(s) 597
FokI GGATG 2 cut(s) 121, 431
Hin1II CATG 5 cut(s) 93, 275, 311, 400, 569
HinfI GANTC 3 cut(s) 53, 292, 419
HphI GGTGA 1 cut(s) 609
Hpy166II GTNNAC 2 cut(s) 266, 598
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 3 cut(s) 272, 397, 478
Hpy8I GTNNAC 2 cut(s) 266, 598
HpyAV CCTTC 3 cut(s) 238, 314, 394
HpyCH4V TGCA 2 cut(s) 286, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 5 cut(s) 93, 275, 311, 400, 569
Kzo9I GATC 2 cut(s) 130, 493
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 8 cut(s) 31, 34, 61, 81, 207, 356, 371, 463
LweI GCATC 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 462
MalI GATC 2 cut(s) 132, 495
MboI GATC 2 cut(s) 130, 493
MboII GAAGA 5 cut(s) 337, 338, 493, 521, 530
MluCI AATT 4 cut(s) 99, 487, 538, 622
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 6 cut(s) 23, 268, 271, 315, 376, 541
MseI TTAA 3 cut(s) 44, 195, 338
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 177
NcoI CCATGG 1 cut(s) 89
NdeII GATC 2 cut(s) 130, 493
NlaIII CATG 5 cut(s) 93, 275, 311, 400, 569
PagI TCATGA 2 cut(s) 271, 396
PfeI GAWTC 2 cut(s) 53, 292
PflFI GACNNNGTC 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 83
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspPI GGNCC 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 84
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 3 cut(s) 44, 195, 338
Sau3AI GATC 2 cut(s) 130, 493
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 49
SetI ASST 6 cut(s) 34, 63, 70, 114, 390, 557
SfaNI GCATC 1 cut(s) 502
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 99, 487, 538, 622
SsiI CCGC 3 cut(s) 171, 302, 449
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 2 cut(s) 57, 89
TaqI TCGA 1 cut(s) 318
TasI AATT 4 cut(s) 99, 487, 538, 622
TfiI GAWTC 2 cut(s) 53, 292
Tru1I TTAA 3 cut(s) 44, 195, 338
Tru9I TTAA 3 cut(s) 44, 195, 338
TscAI CASTG 2 cut(s) 464, 643
TspDTI ATGAA 2 cut(s) 201, 413
TspRI CASTG 2 cut(s) 464, 643
Tth111I GACNNNGTC 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.