RchiOBHm_Chr5g0072181

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
78082034 .. 78082661
628 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34716

Sequence Viewer

Length: 417 bp
ATGCCTCCGCAGAAGTTCATTCGTTTCAGTTGGATTCTAGGGTTTTGGAGTACAAAAATGGCGGACGAACCGACAGAACTCCCAAACCTTCCGATGGAGATCATTCGCGAGATTCTCACCTGGCTTCCGGTGAAGCCGTTATGCAGATTCAGGTGCGTATCGAAGTCATGGAATTCCCTAACTTTTGATCCCAAATTTGTGAAAATGCACTTTAACAAAGCCCTTGAGCACGACGATGTACTCTACCAAAGACGAAGAGTCATGGTCAGCGACTGTAATTCCGGCAAGTTTTACTCTTTTAACTTAGATGAGTTTCTCAATCATGATCATATTGATAATGTTGGTGGTGGTGATGGTGGTGAGAATCATGAATTGTTAGTCACTGAAGTCGATAGAGTCGGAGATGTTTCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

16.05

Weight (kDa)

5.69

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 66 1.5e-11 F-box domain
F-box-like PF12937 28 - 66 3.6e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 8, 62
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 2 cut(s) 172, 194
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 2 cut(s) 52, 240
AfiI CCNNNNNNNGG 1 cut(s) 94
AhdI GACNNNNNGTC 1 cut(s) 257
AjnI CCWGG 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 273
ApoI RAATTY 2 cut(s) 172, 194
AsuHPI GGTGA 4 cut(s) 109, 142, 362, 371
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 2 cut(s) 88, 347
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 325
BfaI CTAG 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 121
BmeRI GACNNNNNGTC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 128, 282
BslI CCNNNNNNNGG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 99, 187, 325
Bsp68I TCGCGA 1 cut(s) 108
BspACI CCGC 2 cut(s) 8, 62
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 2 cut(s) 322, 367
BspPI GGATC 1 cut(s) 182
BssMI GATC 3 cut(s) 99, 187, 325
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 102, 190, 328
BstMBI GATC 3 cut(s) 99, 187, 325
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 381
BtuMI TCGCGA 1 cut(s) 108
CaiI CAGNNNCTG 1 cut(s) 273
CciI TCATGA 2 cut(s) 322, 367
Csp6I GTAC 2 cut(s) 51, 239
CviAII CATG 4 cut(s) 168, 262, 323, 368
CviJI RGCY 3 cut(s) 124, 136, 221
CviKI_1 RGCY 3 cut(s) 124, 136, 221
CviQI GTAC 2 cut(s) 51, 239
DdeI CTNAG 1 cut(s) 304
DpnI GATC 3 cut(s) 101, 189, 327
DpnII GATC 3 cut(s) 99, 187, 325
DriI GACNNNNNGTC 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 250
EciI GGCGGA 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 4 cut(s) 171, 265, 326, 371
FaiI YATR 6 cut(s) 142, 169, 263, 324, 330, 369
FatI CATG 4 cut(s) 167, 261, 322, 367
FbaI TGATCA 1 cut(s) 325
FspBI CTAG 1 cut(s) 38
HapII CCGG 2 cut(s) 128, 282
Hin1II CATG 4 cut(s) 171, 265, 326, 371
HinfI GANTC 6 cut(s) 34, 112, 147, 258, 364, 396
HpaII CCGG 2 cut(s) 128, 282
HphI GGTGA 4 cut(s) 109, 142, 362, 371
Hpy188I TCNGA 2 cut(s) 93, 401
Hpy188III TCNNGA 3 cut(s) 107, 323, 368
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 144, 208
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 4 cut(s) 171, 265, 326, 371
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 3 cut(s) 99, 187, 325
LpnPI CCDG 5 cut(s) 106, 133, 136, 141, 295
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 101, 189, 327
MboI GATC 3 cut(s) 99, 187, 325
MboII GAAGA 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 4 cut(s) 172, 194, 277, 371
MlyI GAGTC 2 cut(s) 267, 405
MmeI TCCRAC 2 cut(s) 11, 379
MnlI CCTC 1 cut(s) 15
MseI TTAA 2 cut(s) 213, 300
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 2 cut(s) 128, 282
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 108
NdeII GATC 3 cut(s) 99, 187, 325
NlaIII CATG 4 cut(s) 171, 265, 326, 371
NmuCI GTSAC 1 cut(s) 379
NruI TCGCGA 1 cut(s) 108
PagI TCATGA 2 cut(s) 322, 367
PfeI GAWTC 4 cut(s) 34, 112, 147, 364
PleI GAGTC 2 cut(s) 266, 404
PpsI GAGTC 2 cut(s) 266, 404
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 273
RruI TCGCGA 1 cut(s) 108
RsaI GTAC 2 cut(s) 52, 240
RsaNI GTAC 2 cut(s) 51, 239
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 213, 300
Sau3AI GATC 3 cut(s) 99, 187, 325
SchI GAGTC 2 cut(s) 267, 405
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 90, 122, 155
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 172, 194, 277, 371
SsiI CCGC 2 cut(s) 8, 62
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 161, 390
TasI AATT 4 cut(s) 172, 194, 277, 371
TatI WGTACW 2 cut(s) 50, 238
TfiI GAWTC 4 cut(s) 34, 112, 147, 364
Tru1I TTAA 2 cut(s) 213, 300
Tru9I TTAA 2 cut(s) 213, 300
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 7, 384
TspRI CASTG 1 cut(s) 388
XapI RAATTY 2 cut(s) 172, 194
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.