Rh2DG639800

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000111
Physical Location & Seq
Forward (+)
86794739 .. 86795885
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG639800.1

Sequence Viewer

Length: 642 bp
ATGGAACACAATGGCGAGCTGACGGGGCACCAATTCTCCCTTCCAGCCGAGATCATAGTTGAGATTCTTTCAAGGCTATCAGTGAAGTCCTTATGCCGCTTCAGGTGCGTATCAAAGCCTTGGCGTTCTCTAATCTCCAACACCAAGTTCATTGCACTGCACTCCAAGAAAGCCCTCGAGGATAAAGAGGTATTCTTTCGGAGACGAAGAGTCATATTTAACGTGGCACTACATTACCTTTACTCTTTGGACCTAGACCAGTTCCTCAACCATAACTATAACGATGATGATGACAATGCACTGGTTCTTAAGAATCGCCATGTTCATGCAGATAATAATCATGATGGTTTGATACCAGCCATCGAGCTCGATTTTGTTTCTGCAGAAGGACGTAGACCCATATACTTCATCTACTCCTGCAATAACTTGTTGTTGTGCGATATGAGGCGTGGGTTTTATTTGGTTAACCCTGCAACCAGGGAGATGAAGAAAGTACCAAAGACACCATCATGGAGACCTGTGAGGCCCTATTGCTTGAGCTTATGTGGATTTGGATTTGATTCCTCCACCAATGAGTACAAGGTGGTTAACGGGCAGGAGGTAATGGCGTGGGGGTTTATGTTGAGGGACTTTTTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

213

Amino Acids

24.92

Weight (kDa)

8.72

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 50 1.6e-11 F-box domain
F-box-like PF12937 13 - 48 5.2e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 27
AccI GTMKAC 1 cut(s) 394
AciI CCGC 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 2 cut(s) 495, 578
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 72
AhdI GACNNNNNGTC 1 cut(s) 209
AjnI CCWGG 1 cut(s) 476
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 131, 163
AluBI AGCT 3 cut(s) 19, 367, 540
AluI AGCT 3 cut(s) 19, 367, 540
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 2 cut(s) 196, 508
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 524
AspS9I GGNCC 2 cut(s) 250, 525
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 3 cut(s) 338, 368, 514
BciT130I CCWGG 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 196, 508
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 478
Bme18I GGWCC 1 cut(s) 250
BmeRI GACNNNNNGTC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 250, 525
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 556
BsaBI GATNNNNATC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 2 cut(s) 119, 477
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse1I ACTGG 2 cut(s) 259, 306
Bse3DI GCAATG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 2 cut(s) 119, 477
BseJI GATNNNNATC 1 cut(s) 336
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 259, 306
BseSI GKGCMC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 526
BshNI GGYRCC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 196, 508
BsmBI CGTCTC 1 cut(s) 196
BsnI GGCC 1 cut(s) 526
Bso31I GGTCTC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 30, 369
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 526
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 29
BspMAI CTGCAG 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 2 cut(s) 259, 306
BssECI CCNNGG 2 cut(s) 119, 477
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 202
BstAFI CTTAAG 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 2 cut(s) 196, 508
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 25, 105
BstNI CCWGG 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 526
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 3 cut(s) 87, 155, 299
Cac8I GCNNGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 250, 525
Csp6I GTAC 2 cut(s) 494, 577
CviAII CATG 4 cut(s) 320, 326, 341, 510
CviJI RGCY 9 cut(s) 19, 47, 76, 118, 173, 359, 367, 526, 540
CviKI_1 RGCY 9 cut(s) 19, 47, 76, 118, 173, 359, 367, 526, 540
CviQI GTAC 2 cut(s) 494, 577
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DriI GACNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 202
Eam1105I GACNNNNNGTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 4 cut(s) 323, 329, 344, 513
FatI CATG 4 cut(s) 319, 325, 340, 509
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 254
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 1 cut(s) 526
Hin1II CATG 4 cut(s) 323, 329, 344, 513
HincII GTYRAC 2 cut(s) 466, 589
HindII GTYRAC 2 cut(s) 466, 589
HinfI GANTC 4 cut(s) 64, 210, 313, 560
HpaI GTTAAC 2 cut(s) 466, 589
Hpy166II GTNNAC 3 cut(s) 395, 466, 589
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 3 cut(s) 395, 466, 589
HpyAV CCTTC 2 cut(s) 50, 380
HpyCH4IV ACGT 2 cut(s) 222, 391
HpyCH4V TGCA 7 cut(s) 155, 160, 299, 329, 383, 420, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 105
HpySE526I ACGT 2 cut(s) 222, 391
Hsp92II CATG 4 cut(s) 323, 329, 344, 513
KspAI GTTAAC 2 cut(s) 466, 589
Kzo9I GATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 254
MaeII ACGT 2 cut(s) 222, 391
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 219, 499
MhlI GDGCHC 2 cut(s) 30, 369
MluCI AATT 1 cut(s) 32
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 9 cut(s) 172, 181, 185, 275, 438, 516, 574, 592, 618
MseI TTAA 4 cut(s) 219, 309, 465, 588
MslI CAYNNNNRTG 2 cut(s) 324, 508
MspCI CTTAAG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 478
MvaI CCWGG 1 cut(s) 478
MwoI GCNNNNNNNGC 2 cut(s) 25, 105
NdeII GATC 1 cut(s) 51
NlaIII CATG 4 cut(s) 323, 329, 344, 513
NlaIV GGNNCC 1 cut(s) 29
NmeAIII GCCGAG 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 176
PagI TCATGA 1 cut(s) 340
PfeI GAWTC 3 cut(s) 64, 313, 560
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 250, 525
PspXI VCTCGAGB 1 cut(s) 176
PstI CTGCAG 1 cut(s) 385
RsaI GTAC 2 cut(s) 495, 578
RsaNI GTAC 2 cut(s) 494, 577
RseI CAYNNNNRTG 2 cut(s) 324, 508
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 4 cut(s) 219, 309, 465, 588
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 2 cut(s) 250, 525
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 478
SduI GDGCHC 2 cut(s) 30, 369
SfcI CTRYAG 1 cut(s) 381
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 324, 508
SmlI CTYRAG 3 cut(s) 176, 308, 535
SmoI CTYRAG 3 cut(s) 176, 308, 535
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 476
StyI CCWWGG 1 cut(s) 119
TaiI ACGT 2 cut(s) 225, 394
TaqI TCGA 3 cut(s) 177, 363, 369
TasI AATT 1 cut(s) 32
TatI WGTACW 1 cut(s) 576
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 3 cut(s) 64, 313, 560
Tru1I TTAA 4 cut(s) 219, 309, 465, 588
Tru9I TTAA 4 cut(s) 219, 309, 465, 588
TscAI CASTG 3 cut(s) 87, 162, 306
TspDTI ATGAA 4 cut(s) 139, 314, 397, 500
TspRI CASTG 3 cut(s) 87, 162, 306
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.